Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004179

Physical Location & Seq

Genomic Coordinates Reverse (-)

32671535 .. 32672854

Gene Structure 1320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG260800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAAGAGGTGAGCCATGATATTTTTATAGGAACTGAGCTACCAGAAACCAATCACATGGGTCTCTTTGCCATTAACTTTTTTGGGACATATTGTACTATTAAAGGAGATGGCATAACTCTTAATTTCCCTCCAGGGGTAGTATCTACTGATCAAATTACTGCAATTCAGGAAGCTTACTGGAGTATGGCATCTGCCCTCTCTGAAGCTGATGGAATTGACTATACTGATCCTGAAGAGCTTGAGTTGTTAATTGCAACTCTTATAGATCTTGATGCCATGGATGGTAAAAGTAGTGTATCCTTGTTGGCAGAGTGTTCTAGTTCCCCTGATGTCAATACTAGGCAAGCATTAGCTAATGCTTTGGCTGCAGCTCCATCTATGCGGACGTTGGGTAATGCAGGAATGGGAGCCTTGCAGAAACTCATGTCTATCAAAGATGCGGTTCATGATGTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010150 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0072593 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

16.23

Weight (kDa)

4.08

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66330 AT1G66330
fragaria_vesca	FvH4_1g28740 FvH4_1g28740 FvH4_1g28740 FvH4_1g28740 FvH4_1g28740
malus_domestica	MD09G1263800.v1.1 MD17G1258600.v1.1 MD17G1259100.v1.1
prunus_persica	Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1
pyrus_communis	pycom09g17770
rosa_chinensis	RchiOBHm_Chr3g0493131 RchiOBHm_Chr7g0216651
rosa_laevigata	RLG00000022727
rosa_multiflora	Rmu_sc0008053.1_g000028 Rmu_sc0008162.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071580 Rroxscaffold_6G00391790 Rroxscaffold_7G00204460
rosa_rugosa	Rorug03G0259300
rosa_samantha	Rh3AG308200 Rh3BG344400 Rh3CG341500 Rh3DG343700 Rh5BG260800
rosa_wichuraiana	Rw0G002850 Rw0G018320 Rw2G023320 Rw3G027110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	385, 443
AclWI	GGATC	1 cut(s)	224
AcuI	CTGAAG	2 cut(s)	225, 255
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	6 cut(s)	40, 176, 209, 241, 356, 374
AluI	AGCT	6 cut(s)	40, 176, 209, 241, 356, 374
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	224
ApeKI	GCWGC	2 cut(s)	368, 371
AsuHPI	GGTGA	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	355, 383
BccI	CCATC	4 cut(s)	104, 206, 278, 385
BciT130I	CCWGG	1 cut(s)	135
BciVI	GTATCC	1 cut(s)	310
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	2 cut(s)	321, 342
BfmI	CTRYAG	1 cut(s)	369
BfuI	GTATCC	1 cut(s)	310
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	2 cut(s)	369, 372
BlsI	GCNGC	2 cut(s)	370, 373
Bme1390I	CCNGG	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	3 cut(s)	200, 265, 430
BpmI	CTGGAG	2 cut(s)	117, 202
BpuEI	CTTGAG	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	134, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	2 cut(s)	134, 279
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	355, 383
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	100
Bso31I	GGTCTC	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	151, 229, 268
Bsp19I	CCATGG	1 cut(s)	279
BspACI	CCGC	2 cut(s)	385, 443
BspCNI	CTCAG	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	412
BspMAI	CTGCAG	1 cut(s)	373
BspPI	GGATC	1 cut(s)	224
BspQI	GCTCTTC	1 cut(s)	231
BspTNI	GGTCTC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	185
BssECI	CCNNGG	2 cut(s)	134, 279
BssMI	GATC	3 cut(s)	151, 229, 268
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	2 cut(s)	36, 459
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	3 cut(s)	154, 232, 271
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	3 cut(s)	151, 229, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	355, 383
BstX2I	RGATCY	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	310
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	348
CciI	TCATGA	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	5 cut(s)	17, 58, 280, 427, 449
CviJI	RGCY	9 cut(s)	15, 40, 176, 209, 241, 356, 368, 374, 413
CviKI_1	RGCY	9 cut(s)	15, 40, 176, 209, 241, 356, 368, 374, 413
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	2 cut(s)	36, 459
DpnI	GATC	3 cut(s)	153, 231, 270
DpnII	GATC	3 cut(s)	151, 229, 268
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	68
Eco57I	CTGAAG	2 cut(s)	225, 255
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	5 cut(s)	20, 61, 283, 430, 452
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	5 cut(s)	16, 57, 279, 426, 448
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	369, 372
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	2 cut(s)	369, 372
FspBI	CTAG	2 cut(s)	321, 342
GluI	GCNGC	2 cut(s)	369, 372
GsuI	CTGGAG	2 cut(s)	117, 202
Hin1II	CATG	5 cut(s)	20, 61, 283, 430, 452
HindIII	AAGCTT	1 cut(s)	174
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	4 cut(s)	170, 233, 272, 449
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	5 cut(s)	164, 257, 371, 401, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	2 cut(s)	36, 459
HpySE526I	ACGT	1 cut(s)	389
Hsp92II	CATG	5 cut(s)	20, 61, 283, 430, 452
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	151, 229, 268
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	379, 410
LpnPI	CCDG	8 cut(s)	57, 120, 147, 155, 166, 246, 342, 387
Lsp1109I	GCAGC	2 cut(s)	355, 383
LweI	GCATC	3 cut(s)	200, 265, 430
MaeI	CTAG	2 cut(s)	321, 342
MaeII	ACGT	1 cut(s)	389
MalI	GATC	3 cut(s)	153, 231, 270
MboI	GATC	3 cut(s)	151, 229, 268
MboII	GAAGA	2 cut(s)	17, 248
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	5 cut(s)	124, 156, 165, 216, 252
MnlI	CCTC	2 cut(s)	141, 209
MseI	TTAA	4 cut(s)	75, 102, 123, 251
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	3 cut(s)	151, 229, 268
NlaIII	CATG	5 cut(s)	20, 61, 283, 430, 452
NlaIV	GGNNCC	1 cut(s)	412
PagI	TCATGA	1 cut(s)	448
PciSI	GCTCTTC	1 cut(s)	231
PkrI	GCNGC	2 cut(s)	370, 373
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	412
PstI	CTGCAG	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	4 cut(s)	75, 102, 123, 251
SatI	GCNGC	2 cut(s)	369, 372
Sau3AI	GATC	3 cut(s)	151, 229, 268
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	8 cut(s)	12, 42, 178, 211, 243, 358, 376, 392
SfaNI	GCATC	3 cut(s)	200, 265, 430
SfcI	CTRYAG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	5 cut(s)	124, 156, 165, 216, 252
SsiI	CCGC	2 cut(s)	385, 443
SspMI	CTAG	2 cut(s)	321, 342
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	279
TaiI	ACGT	1 cut(s)	392
TasI	AATT	5 cut(s)	124, 156, 165, 216, 252
TatI	WGTACW	1 cut(s)	95
Tru1I	TTAA	4 cut(s)	75, 102, 123, 251
Tru9I	TTAA	4 cut(s)	75, 102, 123, 251
TseI	GCWGC	2 cut(s)	368, 371
TspDTI	ATGAA	1 cut(s)	437
XspI	CTAG	2 cut(s)	321, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.