MD09G1263800.v1.1

leaf senescence

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
33689760 .. 33698186
8427 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1263800.v1.1.491

Sequence Viewer

Length: 1386 bp
ATGGCACTTACTGCAAGCAAGGTTTCAAGCTGTCCTGCAGTGACTAATTCAAAAGCGATTCCTAACTCATACAGAATTTTAAATTCGTTTTCCAAGTCAGTGCAACGACATAACCTTCATTGTCCAAGTCAAGGGGTTGAACAGAGGCAGCTAAATTGTGCACGTCTCAGTTCAGAAAAATTGAGATTTTCTAATGATGGTTTGAAGCATATATTGGGTAAACCAGTTAGTTTTACTGTCTCTCAGAGATCTACTGTCATATACCTGTCTGGAGGGAGTCATAATACCAAAGCAAAAGAACGCATCATAACTTATGGTGATTCGGCAAAGGAGACTTGTTCACAGATTGGGGATGATGAAGATGGGGGGGCTCCAGTCTTTTCTGAGAGAACTACTCACTCCAGTCAGGGTTTATCTGAAGCTTGCAAATTTGTTTTCAATGACGCAAAGTTTGTAAATGAAAGGGCTCGCAATGACATTATTCTGCTTTCTCGTGGTATAATGAGGTTGGATGCCCGTGTGCGTCAAGACGTTGCTATTCTTGGGTCGGGGTTTCTTAAGCTGGATGCCCGGGCAAGAGAGGATACTGAGAAAATTGACCGTAATGTGAAGAAGAAAGCTGAGCTCCTTCATCATATTGCTATGATCTTAAAAGACAAAGCCGAGTCTAGATTGAAAACTGCTGCTGATAAGCATTGGAGTGACGGAGCCTTAGAGGCTGATTTGCGCCGTGCTGACCTCCGTGCCAAACAACGTGCAATGAAAGATGCCCTAATGGCTCTGGAGTTTGTCAAAAATATTCATGATAGGATGGTGAACAAAATGTACAATTTTCCTCTGCAAAGCGAAAATGGTGTTATATCAGAAAATGACATACTGGGGCGTATAATGCTTGAAAAGAATGGGAAAAGTCTTGATTTCCCTCCTGGGGAAGTATCTTCCGATCGCATTACTGCAATTCAGGAAGCTTACTGGAGTATGGCGTCTGCCCTCTTTGAAGCTGATGGAATTGACTATACTGATCCTGAAGAGCTTGAGCTGTTAATCGCAACTCTAATTGATCTCGATGCAATGGATGGTAAAAGTAGTGTATCGTTATTGGCAGAGTGTTCAAGTTCTCCCGATGTCAATACCCGGAAAGCAGTAGCCAATGCTTTGGCTGCAGCTCCATCTATGTGGACTCTTGGTAATGCAGGGATGGGAGCATTACAGAGACTCGCAGAAGATAGCAATCCGGCAATTGCTGCCGCAGCCTCTAAAGCAATCTTTGAACTTAAGAAACAATGGGAGATCGAGGAAGGAGATAGCTGGAGGTTTACGATGAACCAAAATACCATTCAAGGTGAGGAAAGCCAAGAATCCGACAACAATGCAGATACAGATTGA

Protein Analysis

462

Amino Acids

50.77

Weight (kDa)

5.84

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1248
AclWI GGATC 1 cut(s) 1016
AcsI RAATTY 3 cut(s) 75, 82, 428
AcuI CTGAAG 2 cut(s) 438, 1047
AcyI GRCGYC 1 cut(s) 983
AfaI GTAC 1 cut(s) 827
AfiI CCNNNNNNNGG 2 cut(s) 131, 928
AflII CTTAAG 2 cut(s) 557, 1274
AjiI CACGTC 1 cut(s) 164
AjnI CCWGG 1 cut(s) 925
AjuI GAANNNNNNNTTGG 4 cut(s) 197, 229, 1320, 1352
Alw21I GWGCWC 2 cut(s) 163, 627
Alw26I GTCTC 4 cut(s) 170, 244, 326, 1207
Alw44I GTGCAC 1 cut(s) 159
AlwI GGATC 1 cut(s) 1016
Ama87I CYCGRG 1 cut(s) 570
ApaLI GTGCAC 1 cut(s) 159
ApeKI GCWGC 6 cut(s) 148, 683, 1160, 1163, 1244, 1250
ApoI RAATTY 3 cut(s) 75, 82, 428
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
AspLEI GCGC 1 cut(s) 729
AsuC2I CCSGG 3 cut(s) 571, 572, 1135
AsuHPI GGTGA 3 cut(s) 329, 826, 1355
AvaI CYCGRG 1 cut(s) 570
BaeGI GKGCMC 1 cut(s) 163
BanII GRGCYC 3 cut(s) 373, 469, 627
BauI CACGAG 1 cut(s) 492
Bbv12I GWGCWC 2 cut(s) 163, 627
BbvI GCAGC 6 cut(s) 160, 670, 1147, 1175, 1231, 1262
BccI CCATC 7 cut(s) 191, 356, 805, 998, 1070, 1177, 1192
BceAI ACGGC 1 cut(s) 714
BcgI CGANNNNNNTGC 2 cut(s) 1352, 1386
BciT130I CCWGG 1 cut(s) 927
BciVI GTATCC 1 cut(s) 577
BcnI CCSGG 3 cut(s) 571, 572, 1135
BcoDI GTCTC 4 cut(s) 170, 244, 326, 1207
BfaI CTAG 1 cut(s) 669
BfmI CTRYAG 2 cut(s) 36, 1161
BfrI CTTAAG 2 cut(s) 557, 1274
BfuI GTATCC 1 cut(s) 577
BglI GCCNNNNNGGC 2 cut(s) 716, 776
BglII AGATCT 1 cut(s) 248
BisI GCNGC 7 cut(s) 149, 684, 1161, 1164, 1245, 1248, 1251
BlpI GCTNAGC 1 cut(s) 621
BlsI GCNGC 7 cut(s) 150, 685, 1162, 1165, 1246, 1249, 1252
Bme1390I CCNGG 4 cut(s) 571, 572, 927, 1135
BmeT110I CYCGRG 1 cut(s) 570
BmgBI CACGTC 1 cut(s) 164
BmiI GGNNCC 2 cut(s) 372, 709
BmrFI CCNGG 4 cut(s) 571, 572, 927, 1135
BmrI ACTGGG 1 cut(s) 887
BmsI GCATC 5 cut(s) 312, 502, 556, 757, 1057
BmuI ACTGGG 1 cut(s) 887
BplI GAGNNNNNCTC 2 cut(s) 379, 411
BpmI CTGGAG 6 cut(s) 291, 357, 385, 803, 994, 1330
Bpu1102I GCTNAGC 1 cut(s) 621
BpuEI CTTGAG 1 cut(s) 1055
BpuMI CCSGG 3 cut(s) 571, 572, 1135
BsaBI GATNNNNATC 1 cut(s) 1230
BsaHI GRCGYC 1 cut(s) 983
BsaJI CCNNGG 2 cut(s) 570, 926
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 928
Bse1I ACTGG 5 cut(s) 224, 374, 402, 882, 977
Bse3DI GCAATG 3 cut(s) 478, 765, 1077
Bse8I GATNNNNATC 1 cut(s) 1230
BseBI CCWGG 1 cut(s) 927
BseDI CCNNGG 2 cut(s) 570, 926
BseGI GGATG 6 cut(s) 358, 517, 571, 816, 1081, 1203
BseJI GATNNNNATC 1 cut(s) 1230
BseLI CCNNNNNNNGG 2 cut(s) 131, 928
BseMI GCAATG 3 cut(s) 478, 765, 1077
BseMII CTCAG 5 cut(s) 181, 257, 375, 579, 612
BseNI ACTGG 5 cut(s) 224, 374, 402, 882, 977
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 6 cut(s) 160, 670, 1147, 1175, 1231, 1262
Bsh1285I CGRYCG 1 cut(s) 946
BsiEI CGRYCG 1 cut(s) 946
BsiHKAI GWGCWC 2 cut(s) 163, 627
BsiHKCI CYCGRG 1 cut(s) 570
BsiSI CCGG 3 cut(s) 571, 1135, 1235
BslI CCNNNNNNNGG 2 cut(s) 131, 928
BsmAI GTCTC 4 cut(s) 170, 244, 326, 1207
BsmBI CGTCTC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 570
Bsp1286I GDGCHC 4 cut(s) 163, 373, 469, 627
Bsp1407I TGTACA 1 cut(s) 825
Bsp143I GATC 6 cut(s) 248, 645, 943, 1021, 1060, 1290
Bsp1720I GCTNAGC 1 cut(s) 621
BspACI CCGC 1 cut(s) 1248
BspCNI CTCAG 5 cut(s) 180, 256, 376, 580, 613
BspHI TCATGA 1 cut(s) 802
BspLI GGNNCC 2 cut(s) 372, 709
BspMAI CTGCAG 2 cut(s) 40, 1165
BspPI GGATC 1 cut(s) 1016
BspQI GCTCTTC 1 cut(s) 1023
BspTI CTTAAG 2 cut(s) 557, 1274
BsrDI GCAATG 3 cut(s) 478, 765, 1077
BsrGI TGTACA 1 cut(s) 825
BsrI ACTGG 5 cut(s) 224, 374, 402, 882, 977
BssECI CCNNGG 2 cut(s) 570, 926
BssMI GATC 6 cut(s) 248, 645, 943, 1021, 1060, 1290
BssNI GRCGYC 1 cut(s) 983
BssSI CACGAG 1 cut(s) 492
Bst2BI CACGAG 1 cut(s) 492
Bst2UI CCWGG 1 cut(s) 927
Bst4CI ACNGT 3 cut(s) 238, 256, 602
Bst6I CTCTTC 1 cut(s) 1023
BstACI GRCGYC 1 cut(s) 983
BstAFI CTTAAG 2 cut(s) 557, 1274
BstAPI GCANNNNNTGC 2 cut(s) 11, 1244
BstAUI TGTACA 1 cut(s) 825
BstC8I GCNNGC 3 cut(s) 16, 424, 469
BstDEI CTNAG 6 cut(s) 167, 243, 384, 588, 621, 712
BstF5I GGATG 6 cut(s) 358, 517, 571, 816, 1081, 1203
BstHHI GCGC 1 cut(s) 729
BstKTI GATC 6 cut(s) 251, 648, 946, 1024, 1063, 1293
BstMAI GTCTC 4 cut(s) 170, 244, 326, 1207
BstMBI GATC 6 cut(s) 248, 645, 943, 1021, 1060, 1290
BstMCI CGRYCG 1 cut(s) 946
BstMWI GCNNNNNNNGC 8 cut(s) 11, 716, 776, 889, 1160, 1244, 1250, 1259
BstNI CCWGG 1 cut(s) 927
BstSCI CCNGG 4 cut(s) 569, 570, 925, 1133
BstSFI CTRYAG 2 cut(s) 36, 1161
BstSLI GKGCMC 1 cut(s) 163
BstV1I GCAGC 6 cut(s) 160, 670, 1147, 1175, 1231, 1262
BstX2I RGATCY 1 cut(s) 248
BstXI CCANNNNNNTGG 2 cut(s) 1156, 1176
BstYI RGATCY 1 cut(s) 248
BsuI GTATCC 1 cut(s) 577
BtrI CACGTC 1 cut(s) 164
BtsCI GGATG 6 cut(s) 358, 517, 571, 816, 1081, 1203
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 45, 105
Cac8I GCNNGC 3 cut(s) 16, 424, 469
CciI TCATGA 1 cut(s) 802
CfoI GCGC 1 cut(s) 729
Cfr9I CCCGGG 1 cut(s) 570
CseI GACGC 3 cut(s) 452, 512, 972
Csp6I GTAC 1 cut(s) 826
CviAII CATG 1 cut(s) 803
CviQI GTAC 1 cut(s) 826
DdeI CTNAG 6 cut(s) 167, 243, 384, 588, 621, 712
DpnI GATC 6 cut(s) 250, 647, 945, 1023, 1062, 1292
DpnII GATC 6 cut(s) 248, 645, 943, 1021, 1060, 1290
DraI TTTAAA 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 1023
EarI CTCTTC 1 cut(s) 1023
Ecl136II GAGCTC 1 cut(s) 625
Eco24I GRGCYC 3 cut(s) 373, 469, 627
Eco53kI GAGCTC 1 cut(s) 625
Eco57I CTGAAG 2 cut(s) 438, 1047
Eco88I CYCGRG 1 cut(s) 570
EcoICRI GAGCTC 1 cut(s) 625
EcoRII CCWGG 1 cut(s) 925
EcoT38I GRGCYC 3 cut(s) 373, 469, 627
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 1 cut(s) 806
FatI CATG 1 cut(s) 802
Fnu4HI GCNGC 7 cut(s) 149, 684, 1161, 1164, 1245, 1248, 1251
FokI GGATG 6 cut(s) 365, 524, 578, 823, 1088, 1210
FriOI GRGCYC 3 cut(s) 373, 469, 627
Fsp4HI GCNGC 7 cut(s) 149, 684, 1161, 1164, 1245, 1248, 1251
FspBI CTAG 1 cut(s) 669
GlaI GCGC 1 cut(s) 728
GluI GCNGC 7 cut(s) 149, 684, 1161, 1164, 1245, 1248, 1251
GsuI CTGGAG 6 cut(s) 291, 357, 385, 803, 994, 1330
HapII CCGG 3 cut(s) 571, 1135, 1235
HgaI GACGC 3 cut(s) 452, 512, 972
HhaI GCGC 1 cut(s) 729
Hin1I GRCGYC 1 cut(s) 983
Hin1II CATG 1 cut(s) 806
Hin6I GCGC 1 cut(s) 727
HinP1I GCGC 1 cut(s) 727
HindIII AAGCTT 2 cut(s) 420, 966
HinfI GANTC 7 cut(s) 58, 277, 320, 665, 1180, 1215, 1358
HpaII CCGG 3 cut(s) 571, 1135, 1235
HphI GGTGA 3 cut(s) 329, 826, 1355
Hpy166II GTNNAC 6 cut(s) 161, 221, 341, 817, 1179, 1317
Hpy188I TCNGA 7 cut(s) 175, 246, 385, 418, 865, 943, 1363
Hpy8I GTNNAC 6 cut(s) 161, 221, 341, 817, 1179, 1317
HpyAV CCTTC 3 cut(s) 125, 638, 1292
HpyCH4III ACNGT 3 cut(s) 238, 256, 602
HpyCH4IV ACGT 3 cut(s) 163, 531, 754
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 716, 776, 889, 1160, 1244, 1250, 1259
HpyF3I CTNAG 6 cut(s) 167, 243, 384, 588, 621, 712
HpySE526I ACGT 3 cut(s) 163, 531, 754
Hsp92I GRCGYC 1 cut(s) 983
Hsp92II CATG 1 cut(s) 806
HspAI GCGC 1 cut(s) 727
Kzo9I GATC 6 cut(s) 248, 645, 943, 1021, 1060, 1290
LguI GCTCTTC 1 cut(s) 1023
LmnI GCTCC 5 cut(s) 376, 630, 707, 1171, 1202
Lsp1109I GCAGC 6 cut(s) 160, 670, 1147, 1175, 1231, 1262
LweI GCATC 5 cut(s) 312, 502, 556, 757, 1057
MaeI CTAG 1 cut(s) 669
MaeII ACGT 3 cut(s) 163, 531, 754
MaeIII GTNAC 2 cut(s) 40, 701
MalI GATC 6 cut(s) 250, 647, 945, 1023, 1062, 1292
MboI GATC 6 cut(s) 248, 645, 943, 1021, 1060, 1290
MboII GAAGA 6 cut(s) 371, 622, 625, 930, 1040, 1235
MfeI CAATTG 1 cut(s) 1239
MflI RGATCY 1 cut(s) 248
MhlI GDGCHC 4 cut(s) 163, 373, 469, 627
MlyI GAGTC 4 cut(s) 286, 674, 1174, 1209
MmeI TCCRAC 2 cut(s) 489, 1386
MseI TTAA 5 cut(s) 80, 558, 650, 1043, 1275
MslI CAYNNNNRTG 2 cut(s) 699, 1174
MspCI CTTAAG 2 cut(s) 557, 1274
MspI CCGG 3 cut(s) 571, 1135, 1235
MspR9I CCNGG 4 cut(s) 571, 572, 927, 1135
MunI CAATTG 1 cut(s) 1239
MvaI CCWGG 1 cut(s) 927
MwoI GCNNNNNNNGC 8 cut(s) 11, 716, 776, 889, 1160, 1244, 1250, 1259
NciI CCSGG 3 cut(s) 571, 572, 1135
NdeII GATC 6 cut(s) 248, 645, 943, 1021, 1060, 1290
NlaIII CATG 1 cut(s) 806
NlaIV GGNNCC 2 cut(s) 372, 709
NmeAIII GCCGAG 1 cut(s) 688
NmuCI GTSAC 2 cut(s) 40, 701
PagI TCATGA 1 cut(s) 802
PciSI GCTCTTC 1 cut(s) 1023
PfeI GAWTC 3 cut(s) 58, 320, 1358
PkrI GCNGC 7 cut(s) 150, 685, 1162, 1165, 1246, 1249, 1252
Ple19I CGATCG 1 cut(s) 946
PleI GAGTC 4 cut(s) 285, 673, 1174, 1209
PpsI GAGTC 4 cut(s) 285, 673, 1174, 1209
Psp124BI GAGCTC 1 cut(s) 627
Psp6I CCWGG 1 cut(s) 925
PspGI CCWGG 1 cut(s) 925
PspN4I GGNNCC 2 cut(s) 372, 709
PsrI GAACNNNNNNTAC 2 cut(s) 809, 841
PstI CTGCAG 2 cut(s) 40, 1165
PsuI RGATCY 1 cut(s) 248
PvuI CGATCG 1 cut(s) 946
RsaI GTAC 1 cut(s) 827
RsaNI GTAC 1 cut(s) 826
RseI CAYNNNNRTG 2 cut(s) 699, 1174
SacI GAGCTC 1 cut(s) 627
SapI GCTCTTC 1 cut(s) 1023
SaqAI TTAA 5 cut(s) 80, 558, 650, 1043, 1275
SatI GCNGC 7 cut(s) 149, 684, 1161, 1164, 1245, 1248, 1251
Sau3AI GATC 6 cut(s) 248, 645, 943, 1021, 1060, 1290
SchI GAGTC 4 cut(s) 286, 674, 1174, 1209
ScrFI CCNGG 4 cut(s) 571, 572, 927, 1135
SduI GDGCHC 4 cut(s) 163, 373, 469, 627
SfaNI GCATC 5 cut(s) 312, 502, 556, 757, 1057
SfcI CTRYAG 2 cut(s) 36, 1161
SmaI CCCGGG 1 cut(s) 572
SmiMI CAYNNNNRTG 2 cut(s) 699, 1174
SmlI CTYRAG 3 cut(s) 557, 1034, 1274
SmoI CTYRAG 3 cut(s) 557, 1034, 1274
SrfI GCCCGGGC 1 cut(s) 572
SsiI CCGC 1 cut(s) 1248
SspI AATATT 1 cut(s) 799
SspMI CTAG 1 cut(s) 669
SstI GAGCTC 1 cut(s) 627
StyD4I CCNGG 4 cut(s) 569, 570, 925, 1133
TaaI ACNGT 3 cut(s) 238, 256, 602
TaiI ACGT 3 cut(s) 166, 534, 757
TaqI TCGA 2 cut(s) 1065, 1293
TatI WGTACW 1 cut(s) 825
TauI GCSGC 1 cut(s) 1250
TfiI GAWTC 3 cut(s) 58, 320, 1358
Tru1I TTAA 5 cut(s) 80, 558, 650, 1043, 1275
Tru9I TTAA 5 cut(s) 80, 558, 650, 1043, 1275
TscAI CASTG 2 cut(s) 45, 105
TseFI GTSAC 2 cut(s) 40, 701
TseI GCWGC 6 cut(s) 148, 683, 1160, 1163, 1244, 1250
Tsp45I GTSAC 2 cut(s) 40, 701
TspDTI ATGAA 7 cut(s) 107, 372, 474, 620, 776, 791, 1337
TspGWI ACGGA 2 cut(s) 720, 731
TspMI CCCGGG 1 cut(s) 570
TspRI CASTG 2 cut(s) 45, 105
Vha464I CTTAAG 2 cut(s) 557, 1274
VneI GTGCAC 1 cut(s) 159
XapI RAATTY 3 cut(s) 75, 82, 428
XbaI TCTAGA 1 cut(s) 668
XmaI CCCGGG 1 cut(s) 570
XspI CTAG 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.