Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00815

Orthogroup ID

OG0004179

Physical Location & Seq

Genomic Coordinates Forward (+)

1153 .. 6909

Gene Structure 5757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G018320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGCACTGTCTGCAAGCAAGGTCACAAGCTGTCCTGGGGTGGCTAATTCAAATACTCGTCATAAATGCTATGGAATTTCAAATAACTTTGTCAAGTTAGTGCAACGGAATAACTTTCACTGTCCAAGTCAAGGAGTGGAACTGAAGCAGCTAAACTATGGATGTCTATTGACAGAGAAAAAGAACTATTCCAATGATGGGTTGTGGCGTATGTTTAGTAACCCAGTTAGTTTCACTGTCTCTCAGAGATCGATTGTCGCACACCTGTCAAGAGGAACTCATAATACCAAAGAAAAAGAAGGAATTATTACTTATGGTGATTGTGCAGAGAAGACTTGTTCACAGATTGGAGACGAAGATGAACGTCAAGTCTTTCCTGAGAGAACTATTAGCTCCAGTCAGGGCTTAACTGAAGCTTGTAAATTTGTTCACAATGATGCAAAGTTTGTAAATGAAAGGGCTCGCAATGACATTATCCTGCTGTCTCGTGGCATATTGAGATTGGATGCTCGTGCACGTCAAGGTGTTGCTATTCTTGGGTCAGAGTTTCTTAAGCTTGATGAGGATACTGAAAAAATTGACCGTAAGGTGAAGAAGAAAATCTTAAAAGACAAAGCAGAGTCTAGGTTGAAAAGTGTTGCCGATAAGCATTGGAGTGACGGAGCCTTAGAGGCTGATCTCCGCCGTGCTGACATCCGTGCCAAACAACGCGCAATGCAAGATGCCCTAATGGCTTTGGAGTTTGTCAAAGACATTCTTGACATGATGGTGAGCAAAATGTACAATTTTCCTCTGCAGAGAGTAGATGGCATTCAATCAGAAAATGATAAACTCGGGCGTATAATGCTTGAAAAGAATGGCATAACTCTTAATTTCCCTCCAGGGGTAGTATCTACTGATCAAATTACTGCAATTCAGGAAGCTTACTGGAGTATGGCATCTGCCCTCTCTGAAGCTGATGGAATTGACTATACTGATCCTGAAGAGCTTGAGTTGTTAATTGCAACTCTTATAGATCTTGATGCCATGGATGGTAAAAGTAGTGTATCCTTGTTGGCAGAGTGTTCTAGTTCCCCTGATGTCAATACTAGGCAAGCATTAGCCAATGCTTTGGCTGCAGCTCCATCTATGTGGACTTTGGGTAATGCAGGAATGGGAGCCTTGCAGAGACTGGCAGACGATAGCAACCCGACAATTGCTGCTGCAGCAACTAAAGCAATCTATGAACTTAAGAAACAATGGGAGATAGAGGAAGGAGATAACTGGAGGTTTACAATGAACCAATATAGCATGGAAGAAAAAGGAGAAGACCAAGAAGCTGATAATGATTCAGATACGGATTATAGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010150 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0072593 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

450

Amino Acids

50.12

Weight (kDa)

5.22

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66330 AT1G66330
fragaria_vesca	FvH4_1g28740 FvH4_1g28740 FvH4_1g28740 FvH4_1g28740 FvH4_1g28740
malus_domestica	MD09G1263800.v1.1 MD17G1258600.v1.1 MD17G1259100.v1.1
prunus_persica	Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1
pyrus_communis	pycom09g17770
rosa_chinensis	RchiOBHm_Chr3g0493131 RchiOBHm_Chr7g0216651
rosa_laevigata	RLG00000022727
rosa_multiflora	Rmu_sc0008053.1_g000028 Rmu_sc0008162.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071580 Rroxscaffold_6G00391790 Rroxscaffold_7G00204460
rosa_rugosa	Rorug03G0259300
rosa_samantha	Rh3AG308200 Rh3BG344400 Rh3CG341500 Rh3DG343700 Rh5BG260800
rosa_wichuraiana	Rw0G002850 Rw0G018320 Rw2G023320 Rw3G027110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	711
AciI	CCGC	1 cut(s)	682
AclWI	GGATC	1 cut(s)	971
AcsI	RAATTY	2 cut(s)	75, 422
AcuI	CTGAAG	4 cut(s)	164, 432, 972, 1002
AfaI	GTAC	1 cut(s)	782
AfiI	CCNNNNNNNGG	3 cut(s)	131, 198, 883
AflII	CTTAAG	2 cut(s)	551, 1229
AgsI	TTSAA	5 cut(s)	51, 81, 631, 815, 851
AjiI	CACGTC	1 cut(s)	518
AjnI	CCWGG	2 cut(s)	34, 880
Alw21I	GWGCWC	1 cut(s)	517
Alw26I	GTCTC	4 cut(s)	244, 345, 489, 1162
Alw44I	GTGCAC	1 cut(s)	513
AlwI	GGATC	1 cut(s)	971
AlwNI	CAGNNNCTG	1 cut(s)	1171
Ama87I	CYCGRG	1 cut(s)	833
ApaLI	GTGCAC	1 cut(s)	513
ApeKI	GCWGC	6 cut(s)	148, 1115, 1118, 1199, 1202, 1205
ApoI	RAATTY	2 cut(s)	75, 422
AspLEI	GCGC	1 cut(s)	713
AsuHPI	GGTGA	3 cut(s)	329, 601, 781
AvaI	CYCGRG	1 cut(s)	833
BaeGI	GKGCMC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	463
BauI	CACGAG	2 cut(s)	486, 510
BbsI	GAAGAC	2 cut(s)	338, 1314
Bbv12I	GWGCWC	1 cut(s)	517
BbvI	GCAGC	6 cut(s)	160, 1102, 1130, 1186, 1189, 1217
BccI	CCATC	6 cut(s)	191, 760, 800, 953, 1025, 1132
BceAI	ACGGC	1 cut(s)	669
BciT130I	CCWGG	2 cut(s)	36, 882
BciVI	GTATCC	2 cut(s)	559, 1057
BclI	TGATCA	1 cut(s)	898
BcoDI	GTCTC	4 cut(s)	244, 345, 489, 1162
BfaI	CTAG	3 cut(s)	624, 1068, 1089
BfmI	CTRYAG	3 cut(s)	794, 1116, 1203
BfrI	CTTAAG	2 cut(s)	551, 1229
BfuI	GTATCC	2 cut(s)	559, 1057
BglI	GCCNNNNNGGC	2 cut(s)	671, 731
BglII	AGATCT	1 cut(s)	1015
BisI	GCNGC	6 cut(s)	149, 1116, 1119, 1200, 1203, 1206
BlsI	GCNGC	6 cut(s)	150, 1117, 1120, 1201, 1204, 1207
Bme1390I	CCNGG	2 cut(s)	36, 882
BmeT110I	CYCGRG	1 cut(s)	833
BmgBI	CACGTC	1 cut(s)	518
BmiI	GGNNCC	2 cut(s)	664, 1159
BmrFI	CCNGG	2 cut(s)	36, 882
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	5 cut(s)	427, 496, 712, 947, 1012
BmuI	ACTGGG	1 cut(s)	218
BpiI	GAAGAC	2 cut(s)	338, 1314
BpmI	CTGGAG	4 cut(s)	379, 864, 949, 1285
BpuEI	CTTGAG	1 cut(s)	1010
Bsa29I	ATCGAT	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	35, 881, 1026
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 198, 883
Bse1I	ACTGG	5 cut(s)	224, 396, 932, 1176, 1268
Bse3DI	GCAATG	2 cut(s)	472, 720
BseBI	CCWGG	2 cut(s)	36, 882
BseCI	ATCGAT	1 cut(s)	251
BseDI	CCNNGG	3 cut(s)	35, 881, 1026
BseGI	GGATG	4 cut(s)	167, 511, 693, 1036
BseLI	CCNNNNNNNGG	3 cut(s)	131, 198, 883
BseMI	GCAATG	2 cut(s)	472, 720
BseMII	CTCAG	2 cut(s)	257, 369
BseNI	ACTGG	5 cut(s)	224, 396, 932, 1176, 1268
BseSI	GKGCMC	1 cut(s)	517
BseXI	GCAGC	6 cut(s)	160, 1102, 1130, 1186, 1189, 1217
BsgI	GTGCAG	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	711
BshVI	ATCGAT	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	517
BsiHKCI	CYCGRG	1 cut(s)	833
BslI	CCNNNNNNNGG	3 cut(s)	131, 198, 883
BsmAI	GTCTC	4 cut(s)	244, 345, 489, 1162
BsmBI	CGTCTC	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	810
BsoBI	CYCGRG	1 cut(s)	833
Bsp1286I	GDGCHC	2 cut(s)	463, 517
Bsp1407I	TGTACA	1 cut(s)	780
Bsp143I	GATC	5 cut(s)	248, 676, 898, 976, 1015
Bsp19I	CCATGG	1 cut(s)	1026
BspACI	CCGC	1 cut(s)	682
BspCNI	CTCAG	2 cut(s)	256, 370
BspDI	ATCGAT	1 cut(s)	251
BspFNI	CGCG	1 cut(s)	711
BspLI	GGNNCC	2 cut(s)	664, 1159
BspMAI	CTGCAG	3 cut(s)	798, 1120, 1207
BspPI	GGATC	1 cut(s)	971
BspQI	GCTCTTC	1 cut(s)	978
BspTI	CTTAAG	2 cut(s)	551, 1229
BsrDI	GCAATG	2 cut(s)	472, 720
BsrGI	TGTACA	1 cut(s)	780
BsrI	ACTGG	5 cut(s)	224, 396, 932, 1176, 1268
BssECI	CCNNGG	3 cut(s)	35, 881, 1026
BssMI	GATC	5 cut(s)	248, 676, 898, 976, 1015
BssSI	CACGAG	2 cut(s)	486, 510
BssT1I	CCWWGG	1 cut(s)	1026
Bst2BI	CACGAG	2 cut(s)	486, 510
Bst2UI	CCWGG	2 cut(s)	36, 882
Bst4CI	ACNGT	4 cut(s)	9, 122, 238, 584
Bst6I	CTCTTC	1 cut(s)	978
BstAFI	CTTAAG	2 cut(s)	551, 1229
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	780
BstC8I	GCNNGC	3 cut(s)	16, 463, 1095
BstDEI	CTNAG	3 cut(s)	243, 378, 667
BstDSI	CCRYGG	1 cut(s)	1026
BstF5I	GGATG	4 cut(s)	167, 511, 693, 1036
BstFNI	CGCG	1 cut(s)	711
BstHHI	GCGC	1 cut(s)	713
BstKTI	GATC	5 cut(s)	251, 679, 901, 979, 1018
BstMAI	GTCTC	4 cut(s)	244, 345, 489, 1162
BstMBI	GATC	5 cut(s)	248, 676, 898, 976, 1015
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 671, 731, 844, 1115, 1205, 1214
BstNI	CCWGG	2 cut(s)	36, 882
BstSCI	CCNGG	2 cut(s)	34, 880
BstSFI	CTRYAG	3 cut(s)	794, 1116, 1203
BstSLI	GKGCMC	1 cut(s)	517
BstUI	CGCG	1 cut(s)	711
BstV1I	GCAGC	6 cut(s)	160, 1102, 1130, 1186, 1189, 1217
BstV2I	GAAGAC	2 cut(s)	338, 1314
BstX2I	RGATCY	1 cut(s)	1015
BstXI	CCANNNNNNTGG	2 cut(s)	1111, 1131
BstYI	RGATCY	1 cut(s)	1015
Bsu15I	ATCGAT	1 cut(s)	251
BsuI	GTATCC	2 cut(s)	559, 1057
BsuTUI	ATCGAT	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	1026
BtrI	CACGTC	1 cut(s)	518
BtsCI	GGATG	4 cut(s)	167, 511, 693, 1036
BtsIMutI	CAGTG	3 cut(s)	5, 118, 234
Cac8I	GCNNGC	3 cut(s)	16, 463, 1095
CaiI	CAGNNNCTG	1 cut(s)	1171
CfoI	GCGC	1 cut(s)	713
ClaI	ATCGAT	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	781
CviAII	CATG	3 cut(s)	763, 1027, 1291
CviQI	GTAC	1 cut(s)	781
DdeI	CTNAG	3 cut(s)	243, 378, 667
DpnI	GATC	5 cut(s)	250, 678, 900, 978, 1017
DpnII	GATC	5 cut(s)	248, 676, 898, 976, 1015
Eam1104I	CTCTTC	1 cut(s)	978
EarI	CTCTTC	1 cut(s)	978
EciI	GGCGGA	1 cut(s)	671
Eco130I	CCWWGG	1 cut(s)	1026
Eco24I	GRGCYC	1 cut(s)	463
Eco57I	CTGAAG	4 cut(s)	164, 432, 972, 1002
Eco88I	CYCGRG	1 cut(s)	833
EcoRII	CCWGG	2 cut(s)	34, 880
EcoT14I	CCWWGG	1 cut(s)	1026
EcoT38I	GRGCYC	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	1026
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	3 cut(s)	766, 1030, 1294
FalI	AAGNNNNNCTT	4 cut(s)	587, 619, 741, 773
FatI	CATG	3 cut(s)	762, 1026, 1290
FbaI	TGATCA	1 cut(s)	898
Fnu4HI	GCNGC	6 cut(s)	149, 1116, 1119, 1200, 1203, 1206
FokI	GGATG	4 cut(s)	174, 518, 680, 1043
FriOI	GRGCYC	1 cut(s)	463
Fsp4HI	GCNGC	6 cut(s)	149, 1116, 1119, 1200, 1203, 1206
FspBI	CTAG	3 cut(s)	624, 1068, 1089
GlaI	GCGC	1 cut(s)	712
GluI	GCNGC	6 cut(s)	149, 1116, 1119, 1200, 1203, 1206
GsuI	CTGGAG	4 cut(s)	379, 864, 949, 1285
HhaI	GCGC	1 cut(s)	713
Hin1II	CATG	3 cut(s)	766, 1030, 1294
Hin6I	GCGC	1 cut(s)	711
HinP1I	GCGC	1 cut(s)	711
HindIII	AAGCTT	3 cut(s)	414, 554, 921
HinfI	GANTC	2 cut(s)	620, 1328
HphI	GGTGA	3 cut(s)	329, 601, 781
Hpy166II	GTNNAC	5 cut(s)	341, 430, 515, 1134, 1272
Hpy188I	TCNGA	5 cut(s)	246, 544, 820, 952, 1333
Hpy188III	TCNNGA	6 cut(s)	270, 377, 758, 917, 980, 1019
Hpy8I	GTNNAC	5 cut(s)	341, 430, 515, 1134, 1272
HpyAV	CCTTC	2 cut(s)	293, 1247
HpyCH4III	ACNGT	4 cut(s)	9, 122, 238, 584
HpyCH4IV	ACGT	2 cut(s)	364, 517
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 671, 731, 844, 1115, 1205, 1214
HpyF3I	CTNAG	3 cut(s)	243, 378, 667
HpySE526I	ACGT	2 cut(s)	364, 517
Hsp92II	CATG	3 cut(s)	766, 1030, 1294
HspAI	GCGC	1 cut(s)	711
Ksp22I	TGATCA	1 cut(s)	898
Kzo9I	GATC	5 cut(s)	248, 676, 898, 976, 1015
LguI	GCTCTTC	1 cut(s)	978
LmnI	GCTCC	4 cut(s)	398, 662, 1126, 1157
Lsp1109I	GCAGC	6 cut(s)	160, 1102, 1130, 1186, 1189, 1217
LweI	GCATC	5 cut(s)	427, 496, 712, 947, 1012
MaeI	CTAG	3 cut(s)	624, 1068, 1089
MaeII	ACGT	2 cut(s)	364, 517
MaeIII	GTNAC	3 cut(s)	22, 218, 656
MalI	GATC	5 cut(s)	250, 678, 900, 978, 1017
MboI	GATC	5 cut(s)	248, 676, 898, 976, 1015
MboII	GAAGA	7 cut(s)	343, 368, 604, 607, 995, 1307, 1319
MfeI	CAATTG	1 cut(s)	1194
MflI	RGATCY	1 cut(s)	1015
MhlI	GDGCHC	2 cut(s)	463, 517
MlyI	GAGTC	1 cut(s)	629
MnlI	CCTC	8 cut(s)	266, 556, 664, 801, 888, 956, 1243, 1260
MseI	TTAA	6 cut(s)	407, 552, 605, 870, 998, 1230
MslI	CAYNNNNRTG	4 cut(s)	435, 654, 767, 1129
MspCI	CTTAAG	2 cut(s)	551, 1229
MspR9I	CCNGG	2 cut(s)	36, 882
MunI	CAATTG	1 cut(s)	1194
Mva1269I	GAATGC	1 cut(s)	810
MvaI	CCWGG	2 cut(s)	36, 882
MvnI	CGCG	1 cut(s)	711
MwoI	GCNNNNNNNGC	7 cut(s)	11, 671, 731, 844, 1115, 1205, 1214
NcoI	CCATGG	1 cut(s)	1026
NdeII	GATC	5 cut(s)	248, 676, 898, 976, 1015
NlaIII	CATG	3 cut(s)	766, 1030, 1294
NlaIV	GGNNCC	2 cut(s)	664, 1159
NmuCI	GTSAC	2 cut(s)	22, 656
PciSI	GCTCTTC	1 cut(s)	978
PctI	GAATGC	1 cut(s)	810
PfeI	GAWTC	1 cut(s)	1328
PkrI	GCNGC	6 cut(s)	150, 1117, 1120, 1201, 1204, 1207
PleI	GAGTC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	628
Psp6I	CCWGG	2 cut(s)	34, 880
PspGI	CCWGG	2 cut(s)	34, 880
PspN4I	GGNNCC	2 cut(s)	664, 1159
PsrI	GAACNNNNNNTAC	2 cut(s)	268, 300
PstI	CTGCAG	3 cut(s)	798, 1120, 1207
PstNI	CAGNNNCTG	1 cut(s)	1171
PsuI	RGATCY	1 cut(s)	1015
RsaI	GTAC	1 cut(s)	782
RsaNI	GTAC	1 cut(s)	781
RseI	CAYNNNNRTG	4 cut(s)	435, 654, 767, 1129
SapI	GCTCTTC	1 cut(s)	978
SaqAI	TTAA	6 cut(s)	407, 552, 605, 870, 998, 1230
SatI	GCNGC	6 cut(s)	149, 1116, 1119, 1200, 1203, 1206
Sau3AI	GATC	5 cut(s)	248, 676, 898, 976, 1015
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	2 cut(s)	36, 882
SduI	GDGCHC	2 cut(s)	463, 517
SfaNI	GCATC	5 cut(s)	427, 496, 712, 947, 1012
SfcI	CTRYAG	3 cut(s)	794, 1116, 1203
SmiMI	CAYNNNNRTG	4 cut(s)	435, 654, 767, 1129
SmlI	CTYRAG	3 cut(s)	551, 989, 1229
SmoI	CTYRAG	3 cut(s)	551, 989, 1229
SsiI	CCGC	1 cut(s)	682
SspMI	CTAG	3 cut(s)	624, 1068, 1089
StyD4I	CCNGG	2 cut(s)	34, 880
StyI	CCWWGG	1 cut(s)	1026
TaaI	ACNGT	4 cut(s)	9, 122, 238, 584
TaiI	ACGT	2 cut(s)	367, 520
TaqI	TCGA	1 cut(s)	251
TatI	WGTACW	1 cut(s)	780
TfiI	GAWTC	1 cut(s)	1328
Tru1I	TTAA	6 cut(s)	407, 552, 605, 870, 998, 1230
Tru9I	TTAA	6 cut(s)	407, 552, 605, 870, 998, 1230
TscAI	CASTG	3 cut(s)	12, 125, 241
TseFI	GTSAC	2 cut(s)	22, 656
TseI	GCWGC	6 cut(s)	148, 1115, 1118, 1199, 1202, 1205
Tsp45I	GTSAC	2 cut(s)	22, 656
TspDTI	ATGAA	4 cut(s)	375, 468, 1239, 1292
TspGWI	ACGGA	4 cut(s)	121, 675, 686, 1352
TspRI	CASTG	3 cut(s)	12, 125, 241
Vha464I	CTTAAG	2 cut(s)	551, 1229
VneI	GTGCAC	1 cut(s)	513
XapI	RAATTY	2 cut(s)	75, 422
XspI	CTAG	3 cut(s)	624, 1068, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.