FvH4_1g28740

leaf senescence

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
21067147 .. 21073903
6757 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28740.t4

Sequence Viewer

Length: 1392 bp
ATGGCACTTTCTGCAAGCAAGGTCTCGAGCTGTCCTGGGATGACTATTTCTACTACTCTTCATAAATCTTATGGAATTTCAAATAACTTTGCCAAGTCAGTGCAACGGAGTAATTTTCACTGTCCAAGTCTAGGAGTGGAACTGAGGCAGCTAAATTATGGATGTCTAGTGACAGAAAAAAAGAACTATTCTAATGATGGGTTGTGGTGTATGTTTGGTAAACCAGTTAGTTTCACTGTCTCTCAGAGATCGATTGTCGCACACCTTTCAAGACGAACTCATAATACCAAAGAAAAAGAGGGCATTATGACTTATGGTGATTGTACAGAGGAGACTAGTTCACAGATTGGAGACGAAGATGGACGTCAAGTGTTTTCTGAGAGAACTATTAGCTCCAGTCAGGGATTAACTGAAGCTTGTAAATTTGTTTTCAATGATGCAAAGTTTGTAAATGAAAGGGCTCGCAATGACATTATCCTGCTGTCTCGTGGCATATTGAGACTGGATGCTCGTGCACGTCAAGATGTTGCTATTCTTGGGTCAGAGTTTCTTAAACTTGACGCCCGGGCAAGAGAGGATACTGAAAAAATTGACCGTAAGGTGAAGAAGAAAGCTGAGCGCCTTCATCATATTGCTAGGGTCTTAAAAGACAAAGCAGAGTATAGGTTGAAAAGTGTTGCCGATAAGCATTGGAGTGACGGAGCTTTAGAGGCTGATCTGCGCCGTGCTGACATCCGTGCCAAACAACGTGCAATGCAAGATGCCCTAATGGCTTTGGAGTTTGTCAAAGACATTCATGAAATGATGGTGAGCAAAACATACAATCTTCCTTTGCAGAGAGTAAATGGTATTCAATCAGAAAATGATAAACTCGGGCGTATAATGCTTGAAAAGAATGGCATTACTCTCAATTTCCCTCCAGGGGTAGTATCTAGTGATCAGATTACTGCAATTCAGGAAGCTTACTGGAGTATAGCATCTGCTCTCTCTGAAGCTGATGGAATTGACTATACTGATCCTGAAGAGCTCGAGTTGTTAATTGCAACTCTTATAGATCTTGATGCTATGGATGGTAAAACTAGCGTGTCCTTGTTGGCAGAGTGTTCCAGTTCCCCTGATGTCAGTACTAGGCAAGCATTAGCCAATGCTTTAGCTGCAGCTCCATCTATGTGGACTCTGGGTAATGCAGGAATGGGAGCCTTGCAGAGACTGGCAGATGATAGCAACCCAGCAATTGCTGCTGCAGCAACTAAAGCAATTTATGAACTTAAGAAACAATGGGAGATAGAGGAAGGAGATAGCTGGAGGTTTACAATGGACCAATATAGCATGGAAAAGAAAGGGGAAGGCCAAGAAGCTGATAATGATTTAAATACAGATTATAGTATTTAG

Protein Analysis

464

Amino Acids

51.43

Weight (kDa)

5.67

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 367
AclWI GGATC 1 cut(s) 1010
AcsI RAATTY 2 cut(s) 75, 422
AcuI CTGAAG 3 cut(s) 432, 1011, 1041
AcyI GRCGYC 2 cut(s) 364, 561
AfaI GTAC 2 cut(s) 325, 1126
AfiI CCNNNNNNNGG 2 cut(s) 131, 922
AflII CTTAAG 1 cut(s) 1268
AgsI TTSAA 6 cut(s) 81, 270, 433, 670, 854, 890
AhlI ACTAGT 1 cut(s) 335
AjiI CACGTC 1 cut(s) 518
AjnI CCWGG 2 cut(s) 34, 919
Alw21I GWGCWC 2 cut(s) 517, 1029
Alw26I GTCTC 7 cut(s) 28, 244, 326, 345, 489, 493, 1201
Alw44I GTGCAC 1 cut(s) 513
AlwI GGATC 1 cut(s) 1010
AlwNI CAGNNNCTG 1 cut(s) 1210
Ama87I CYCGRG 4 cut(s) 25, 564, 872, 1028
AoxI GGCC 1 cut(s) 1348
ApaLI GTGCAC 1 cut(s) 513
ApeKI GCWGC 6 cut(s) 148, 1154, 1157, 1238, 1241, 1244
ApoI RAATTY 2 cut(s) 75, 422
AspLEI GCGC 2 cut(s) 621, 723
AspS9I GGNCC 1 cut(s) 1318
AsuC2I CCSGG 2 cut(s) 565, 566
AsuHPI GGTGA 3 cut(s) 329, 613, 820
AvaI CYCGRG 4 cut(s) 25, 564, 872, 1028
AvaII GGWCC 1 cut(s) 1318
BaeGI GKGCMC 1 cut(s) 517
BanII GRGCYC 2 cut(s) 463, 1029
BauI CACGAG 2 cut(s) 486, 510
Bbv12I GWGCWC 2 cut(s) 517, 1029
BbvI GCAGC 6 cut(s) 160, 1141, 1169, 1225, 1228, 1256
BccI CCATC 6 cut(s) 191, 353, 799, 992, 1064, 1171
BceAI ACGGC 1 cut(s) 708
BciT130I CCWGG 2 cut(s) 36, 921
BciVI GTATCC 1 cut(s) 571
BclI TGATCA 1 cut(s) 937
BcnI CCSGG 2 cut(s) 565, 566
BcoDI GTCTC 7 cut(s) 28, 244, 326, 345, 489, 493, 1201
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 7 cut(s) 131, 167, 336, 636, 933, 1080, 1128
BfmI CTRYAG 2 cut(s) 1155, 1242
BfoI RGCGCY 1 cut(s) 622
BfrI CTTAAG 1 cut(s) 1268
BfuI GTATCC 1 cut(s) 571
BglI GCCNNNNNGGC 1 cut(s) 770
BglII AGATCT 1 cut(s) 1054
BisI GCNGC 6 cut(s) 149, 1155, 1158, 1239, 1242, 1245
BlpI GCTNAGC 1 cut(s) 615
BlsI GCNGC 6 cut(s) 150, 1156, 1159, 1240, 1243, 1246
BmcAI AGTACT 1 cut(s) 1126
Bme1390I CCNGG 4 cut(s) 36, 565, 566, 921
Bme18I GGWCC 1 cut(s) 1318
BmeT110I CYCGRG 4 cut(s) 25, 564, 872, 1028
BmgBI CACGTC 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 1318
BmiI GGNNCC 1 cut(s) 1198
BmrFI CCNGG 4 cut(s) 36, 565, 566, 921
BmsI GCATC 5 cut(s) 427, 496, 751, 986, 1051
BpmI CTGGAG 4 cut(s) 379, 903, 988, 1324
Bpu1102I GCTNAGC 1 cut(s) 615
BpuMI CCSGG 2 cut(s) 565, 566
Bsa29I ATCGAT 1 cut(s) 251
BsaHI GRCGYC 2 cut(s) 364, 561
BsaI GGTCTC 1 cut(s) 28
BsaJI CCNNGG 3 cut(s) 35, 564, 920
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 922
Bse1I ACTGG 6 cut(s) 224, 396, 507, 971, 1107, 1215
Bse3DI GCAATG 2 cut(s) 472, 759
BseBI CCWGG 2 cut(s) 36, 921
BseCI ATCGAT 1 cut(s) 251
BseDI CCNNGG 3 cut(s) 35, 564, 920
BseGI GGATG 5 cut(s) 45, 167, 511, 732, 1075
BseLI CCNNNNNNNGG 2 cut(s) 131, 922
BseMI GCAATG 2 cut(s) 472, 759
BseMII CTCAG 4 cut(s) 134, 257, 369, 606
BseNI ACTGG 6 cut(s) 224, 396, 507, 971, 1107, 1215
BseRI GAGGAG 1 cut(s) 344
BseSI GKGCMC 1 cut(s) 517
BseXI GCAGC 6 cut(s) 160, 1141, 1169, 1225, 1228, 1256
BseYI CCCAGC 1 cut(s) 1228
BshFI GGCC 1 cut(s) 1350
BshVI ATCGAT 1 cut(s) 251
BsiHKAI GWGCWC 2 cut(s) 517, 1029
BsiHKCI CYCGRG 4 cut(s) 25, 564, 872, 1028
BsiSI CCGG 1 cut(s) 565
BslI CCNNNNNNNGG 2 cut(s) 131, 922
BsmAI GTCTC 7 cut(s) 28, 244, 326, 345, 489, 493, 1201
BsmBI CGTCTC 1 cut(s) 345
BsnI GGCC 1 cut(s) 1350
Bso31I GGTCTC 1 cut(s) 28
BsoBI CYCGRG 4 cut(s) 25, 564, 872, 1028
Bsp1286I GDGCHC 3 cut(s) 463, 517, 1029
Bsp1407I TGTACA 1 cut(s) 323
Bsp143I GATC 5 cut(s) 248, 715, 937, 1015, 1054
Bsp1720I GCTNAGC 1 cut(s) 615
BspANI GGCC 1 cut(s) 1350
BspCNI CTCAG 4 cut(s) 135, 256, 370, 607
BspDI ATCGAT 1 cut(s) 251
BspHI TCATGA 1 cut(s) 796
BspLI GGNNCC 1 cut(s) 1198
BspMAI CTGCAG 2 cut(s) 1159, 1246
BspPI GGATC 1 cut(s) 1010
BspQI GCTCTTC 1 cut(s) 1017
BspTI CTTAAG 1 cut(s) 1268
BspTNI GGTCTC 1 cut(s) 28
BsrDI GCAATG 2 cut(s) 472, 759
BsrGI TGTACA 1 cut(s) 323
BsrI ACTGG 6 cut(s) 224, 396, 507, 971, 1107, 1215
BssECI CCNNGG 3 cut(s) 35, 564, 920
BssMI GATC 5 cut(s) 248, 715, 937, 1015, 1054
BssNI GRCGYC 2 cut(s) 364, 561
BssSI CACGAG 2 cut(s) 486, 510
Bst2BI CACGAG 2 cut(s) 486, 510
Bst2UI CCWGG 2 cut(s) 36, 921
Bst4CI ACNGT 3 cut(s) 122, 238, 596
Bst6I CTCTTC 2 cut(s) 63, 1017
BstACI GRCGYC 2 cut(s) 364, 561
BstAFI CTTAAG 1 cut(s) 1268
BstAPI GCANNNNNTGC 2 cut(s) 11, 1238
BstAUI TGTACA 1 cut(s) 323
BstC8I GCNNGC 3 cut(s) 16, 463, 1134
BstDEI CTNAG 4 cut(s) 143, 243, 378, 615
BstF5I GGATG 5 cut(s) 45, 167, 511, 732, 1075
BstH2I RGCGCY 1 cut(s) 622
BstHHI GCGC 2 cut(s) 621, 723
BstKTI GATC 5 cut(s) 251, 718, 940, 1018, 1057
BstMAI GTCTC 7 cut(s) 28, 244, 326, 345, 489, 493, 1201
BstMBI GATC 5 cut(s) 248, 715, 937, 1015, 1054
BstMWI GCNNNNNNNGC 8 cut(s) 11, 710, 770, 883, 1154, 1238, 1244, 1253
BstNI CCWGG 2 cut(s) 36, 921
BstSCI CCNGG 4 cut(s) 34, 563, 564, 919
BstSFI CTRYAG 2 cut(s) 1155, 1242
BstSLI GKGCMC 1 cut(s) 517
BstV1I GCAGC 6 cut(s) 160, 1141, 1169, 1225, 1228, 1256
BstX2I RGATCY 1 cut(s) 1054
BstXI CCANNNNNNTGG 1 cut(s) 1170
BstYI RGATCY 1 cut(s) 1054
Bsu15I ATCGAT 1 cut(s) 251
BsuI GTATCC 1 cut(s) 571
BsuRI GGCC 1 cut(s) 1350
BsuTUI ATCGAT 1 cut(s) 251
BtrI CACGTC 1 cut(s) 518
BtsCI GGATG 5 cut(s) 45, 167, 511, 732, 1075
BtsIMutI CAGTG 3 cut(s) 105, 118, 234
Cac8I GCNNGC 3 cut(s) 16, 463, 1134
CaiI CAGNNNCTG 1 cut(s) 1210
CciI TCATGA 1 cut(s) 796
CfoI GCGC 2 cut(s) 621, 723
Cfr13I GGNCC 1 cut(s) 1318
Cfr9I CCCGGG 1 cut(s) 564
ClaI ATCGAT 1 cut(s) 251
CseI GACGC 1 cut(s) 569
Csp6I GTAC 2 cut(s) 324, 1125
CviAII CATG 2 cut(s) 797, 1330
CviQI GTAC 2 cut(s) 324, 1125
DdeI CTNAG 4 cut(s) 143, 243, 378, 615
DpnI GATC 5 cut(s) 250, 717, 939, 1017, 1056
DpnII GATC 5 cut(s) 248, 715, 937, 1015, 1054
DraI TTTAAA 1 cut(s) 1371
Eam1104I CTCTTC 2 cut(s) 63, 1017
EarI CTCTTC 2 cut(s) 63, 1017
Ecl136II GAGCTC 1 cut(s) 1027
Eco24I GRGCYC 2 cut(s) 463, 1029
Eco31I GGTCTC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 1318
Eco53kI GAGCTC 1 cut(s) 1027
Eco57I CTGAAG 3 cut(s) 432, 1011, 1041
Eco88I CYCGRG 4 cut(s) 25, 564, 872, 1028
EcoICRI GAGCTC 1 cut(s) 1027
EcoRII CCWGG 2 cut(s) 34, 919
EcoT38I GRGCYC 2 cut(s) 463, 1029
Esp3I CGTCTC 1 cut(s) 345
FaeI CATG 2 cut(s) 800, 1333
FatI CATG 2 cut(s) 796, 1329
FbaI TGATCA 1 cut(s) 937
Fnu4HI GCNGC 6 cut(s) 149, 1155, 1158, 1239, 1242, 1245
FokI GGATG 5 cut(s) 52, 174, 518, 719, 1082
FriOI GRGCYC 2 cut(s) 463, 1029
Fsp4HI GCNGC 6 cut(s) 149, 1155, 1158, 1239, 1242, 1245
FspBI CTAG 7 cut(s) 131, 167, 336, 636, 933, 1080, 1128
GlaI GCGC 2 cut(s) 620, 722
GluI GCNGC 6 cut(s) 149, 1155, 1158, 1239, 1242, 1245
GsaI CCCAGC 1 cut(s) 1232
GsuI CTGGAG 4 cut(s) 379, 903, 988, 1324
HaeII RGCGCY 1 cut(s) 622
HaeIII GGCC 1 cut(s) 1350
HapII CCGG 1 cut(s) 565
HgaI GACGC 1 cut(s) 569
HhaI GCGC 2 cut(s) 621, 723
Hin1I GRCGYC 2 cut(s) 364, 561
Hin1II CATG 2 cut(s) 800, 1333
Hin6I GCGC 2 cut(s) 619, 721
HinP1I GCGC 2 cut(s) 619, 721
HindIII AAGCTT 2 cut(s) 414, 960
HinfI GANTC 1 cut(s) 1174
HpaII CCGG 1 cut(s) 565
HphI GGTGA 3 cut(s) 329, 613, 820
Hpy166II GTNNAC 5 cut(s) 221, 341, 515, 1173, 1311
Hpy188I TCNGA 6 cut(s) 246, 379, 544, 859, 942, 991
Hpy188III TCNNGA 7 cut(s) 25, 270, 521, 797, 956, 1019, 1058
Hpy8I GTNNAC 5 cut(s) 221, 341, 515, 1173, 1311
HpyAV CCTTC 3 cut(s) 632, 1286, 1340
HpyCH4III ACNGT 3 cut(s) 122, 238, 596
HpyCH4IV ACGT 3 cut(s) 364, 517, 748
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 710, 770, 883, 1154, 1238, 1244, 1253
HpyF3I CTNAG 4 cut(s) 143, 243, 378, 615
HpySE526I ACGT 3 cut(s) 364, 517, 748
Hsp92I GRCGYC 2 cut(s) 364, 561
Hsp92II CATG 2 cut(s) 800, 1333
HspAI GCGC 2 cut(s) 619, 721
Ksp22I TGATCA 1 cut(s) 937
Kzo9I GATC 5 cut(s) 248, 715, 937, 1015, 1054
LguI GCTCTTC 1 cut(s) 1017
LmnI GCTCC 4 cut(s) 398, 701, 1165, 1196
Lsp1109I GCAGC 6 cut(s) 160, 1141, 1169, 1225, 1228, 1256
LweI GCATC 5 cut(s) 427, 496, 751, 986, 1051
MaeI CTAG 7 cut(s) 131, 167, 336, 636, 933, 1080, 1128
MaeII ACGT 3 cut(s) 364, 517, 748
MaeIII GTNAC 2 cut(s) 169, 695
MalI GATC 5 cut(s) 250, 717, 939, 1017, 1056
MboI GATC 5 cut(s) 248, 715, 937, 1015, 1054
MboII GAAGA 6 cut(s) 50, 368, 616, 619, 818, 1034
MfeI CAATTG 1 cut(s) 1233
MflI RGATCY 1 cut(s) 1054
MhlI GDGCHC 3 cut(s) 463, 517, 1029
MlyI GAGTC 1 cut(s) 1168
MnlI CCTC 8 cut(s) 138, 292, 322, 568, 703, 927, 1282, 1299
MseI TTAA 6 cut(s) 407, 552, 644, 1037, 1269, 1370
MslI CAYNNNNRTG 2 cut(s) 693, 1168
MspCI CTTAAG 1 cut(s) 1268
MspI CCGG 1 cut(s) 565
MspR9I CCNGG 4 cut(s) 36, 565, 566, 921
MunI CAATTG 1 cut(s) 1233
MvaI CCWGG 2 cut(s) 36, 921
MwoI GCNNNNNNNGC 8 cut(s) 11, 710, 770, 883, 1154, 1238, 1244, 1253
NciI CCSGG 2 cut(s) 565, 566
NdeII GATC 5 cut(s) 248, 715, 937, 1015, 1054
NlaIII CATG 2 cut(s) 800, 1333
NlaIV GGNNCC 1 cut(s) 1198
NmuCI GTSAC 2 cut(s) 169, 695
PaeR7I CTCGAG 2 cut(s) 25, 1028
PagI TCATGA 1 cut(s) 796
PciSI GCTCTTC 1 cut(s) 1017
PkrI GCNGC 6 cut(s) 150, 1156, 1159, 1240, 1243, 1246
PleI GAGTC 1 cut(s) 1168
PpsI GAGTC 1 cut(s) 1168
Psp124BI GAGCTC 1 cut(s) 1029
Psp6I CCWGG 2 cut(s) 34, 919
PspFI CCCAGC 1 cut(s) 1228
PspGI CCWGG 2 cut(s) 34, 919
PspN4I GGNNCC 1 cut(s) 1198
PspPI GGNCC 1 cut(s) 1318
PspXI VCTCGAGB 1 cut(s) 1028
PsrI GAACNNNNNNTAC 2 cut(s) 268, 300
PstI CTGCAG 2 cut(s) 1159, 1246
PstNI CAGNNNCTG 1 cut(s) 1210
PsuI RGATCY 1 cut(s) 1054
RsaI GTAC 2 cut(s) 325, 1126
RsaNI GTAC 2 cut(s) 324, 1125
RseI CAYNNNNRTG 2 cut(s) 693, 1168
SacI GAGCTC 1 cut(s) 1029
SapI GCTCTTC 1 cut(s) 1017
SaqAI TTAA 6 cut(s) 407, 552, 644, 1037, 1269, 1370
SatI GCNGC 6 cut(s) 149, 1155, 1158, 1239, 1242, 1245
Sau3AI GATC 5 cut(s) 248, 715, 937, 1015, 1054
Sau96I GGNCC 1 cut(s) 1318
ScaI AGTACT 1 cut(s) 1126
SchI GAGTC 1 cut(s) 1168
ScrFI CCNGG 4 cut(s) 36, 565, 566, 921
SduI GDGCHC 3 cut(s) 463, 517, 1029
SfaNI GCATC 5 cut(s) 427, 496, 751, 986, 1051
SfcI CTRYAG 2 cut(s) 1155, 1242
Sfr274I CTCGAG 2 cut(s) 25, 1028
SinI GGWCC 1 cut(s) 1318
SlaI CTCGAG 2 cut(s) 25, 1028
SmaI CCCGGG 1 cut(s) 566
SmiI ATTTAAAT 1 cut(s) 1371
SmiMI CAYNNNNRTG 2 cut(s) 693, 1168
SmlI CTYRAG 3 cut(s) 25, 1028, 1268
SmoI CTYRAG 3 cut(s) 25, 1028, 1268
SpeI ACTAGT 1 cut(s) 335
SrfI GCCCGGGC 1 cut(s) 566
SspMI CTAG 7 cut(s) 131, 167, 336, 636, 933, 1080, 1128
SstI GAGCTC 1 cut(s) 1029
StyD4I CCNGG 4 cut(s) 34, 563, 564, 919
SwaI ATTTAAAT 1 cut(s) 1371
TaaI ACNGT 3 cut(s) 122, 238, 596
TaiI ACGT 3 cut(s) 367, 520, 751
TaqI TCGA 3 cut(s) 26, 251, 1029
TatI WGTACW 2 cut(s) 323, 1124
Tru1I TTAA 6 cut(s) 407, 552, 644, 1037, 1269, 1370
Tru9I TTAA 6 cut(s) 407, 552, 644, 1037, 1269, 1370
TscAI CASTG 3 cut(s) 105, 125, 241
TseFI GTSAC 2 cut(s) 169, 695
TseI GCWGC 6 cut(s) 148, 1154, 1157, 1238, 1241, 1244
Tsp45I GTSAC 2 cut(s) 169, 695
TspDTI ATGAA 6 cut(s) 50, 468, 614, 785, 813, 1278
TspGWI ACGGA 3 cut(s) 121, 714, 725
TspMI CCCGGG 1 cut(s) 564
TspRI CASTG 3 cut(s) 105, 125, 241
Vha464I CTTAAG 1 cut(s) 1268
VneI GTGCAC 1 cut(s) 513
VpaK11BI GGWCC 1 cut(s) 1318
XapI RAATTY 2 cut(s) 75, 422
XhoI CTCGAG 2 cut(s) 25, 1028
XmaI CCCGGG 1 cut(s) 564
XspI CTAG 7 cut(s) 131, 167, 336, 636, 933, 1080, 1128
ZraI GACGTC 1 cut(s) 365
ZrmI AGTACT 1 cut(s) 1126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.