Prupe.3G161300_v2.0.a1

leaf senescence

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
18013100 .. 18020676
7577 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G161300.1

Sequence Viewer

Length: 1377 bp
ATGGCACTTACTGCAGGCAAGGTTTTAAGCTGTCCTGCAGTGACTAATACAAAAACCATTCCTAACTCATATGGAATCTTAAATTCTTATGCCATGTCAATGCAACGAAATAACCTTCATTGCCCAAGTCAAGGGGTTGAACTGAGGCAGCTAAACTATGGACGTCTGTTGAAAGATAAAATGATCTTTTCTAATGATGGTTTGTGGCGTATATTGGGTAAACCTGTTAGTTTCACTGACTCTCAGAGATCTACTGTCTTATATCTGTCAAGAGGAACTCATAATACCAAAGCAAAAGAGCCCATTATAACTTACGGTGATCCTGCAGGGGAGACTAGTTCACAGAGTGGGGATAAGGAAGATGAGCATCCAGTCTTTTCTGAGAGAACTACTCACTCCAGTTTAGCTGAAGCTTGTAAATTTGTTTGCAATGATGCAAAGTTTGTAAATGAGAGGGCTCGCAATGACATTATTCTGCTTTCTCGTGGCATAATGAGGTTGGATGCCCGTGCACGTCAAGACGTTGCTATTCTTGGGTCCGGGTTTCTTAAGCTTGATGCTCGAGCACGAGAGGATACGGAGAAAATTGACCGTAATGTGAAGAAGAAAGCTGAGTGCCTTCATCATATTGCTATGATCTTAAAAGACAAAGCAGAGTCTAGATTGAAAACTGCCGCTGATAAGCATTGGAGTGACGGAGCCTTAGAGGCTGATTTGCGCCGTGCTGACTTCCGTGCCAAACAACGTGCAATGGAAGATGCCCTAATGGCTTTGGAGTTTGTCAAAAATATTCATGACCGGATGGTGAGCAAAATGTACAATTTTCCTTTGCATAGCGAAAATGGTATTGTATCAGAAAATGACATGCTGGGGCGTATAATGCTTGAAAAGAATGGCAAAAGTCTTGATTTCCCTTTTGGTGAAGTATCTACTGATCGCATTACTGCAATTCAGGAAGCTTACTGGAGTATGGCGTCTGCTCTCTCTGAAGCAGATGGAATTGACTATACTGATCCTGAAGAGCTTGAGCTGTTAATTGCAACTCTTATTGATCTCGATGCAATGGATGGTAAAAGTAGTGTATCGTTATTGGCAGAGTGTTCAAATTCTCCTGATGTCAATACCAGGAAAGCCTTAGCCAATGCCTTGGCTGCAGCCCCATCGATGTGGACTCTTGGAAATGCAGGAATGGGAGCACTACAGAGACTCGCGGAGGATAGCAATCCGGCAATTGCTGCCGCTGCCACTAAAGCAATCTTTGAACTTAAGAGACAATGGGAGATAGAGGAAGGAGATAGCTGGAGGTTTACGATGAACCGAAACCCCATTGAAGAATGGGAAACCCAAGAAGCTGACGACAATGAAGATACTGATTGA

Protein Analysis

459

Amino Acids

50.97

Weight (kDa)

5.29

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 308
AatII GACGTC 1 cut(s) 166
AccII CGCG 1 cut(s) 1211
AciI CCGC 3 cut(s) 675, 1211, 1239
AclWI GGATC 2 cut(s) 314, 1007
AcsI RAATTY 3 cut(s) 82, 419, 1105
AcuI CTGAAG 3 cut(s) 429, 1008, 1038
AcyI GRCGYC 2 cut(s) 163, 974
AdeI CACNNNGTG 1 cut(s) 347
AfaI GTAC 1 cut(s) 818
AfiI CCNNNNNNNGG 1 cut(s) 131
AflII CTTAAG 2 cut(s) 548, 1265
AgsI TTSAA 7 cut(s) 140, 172, 667, 887, 1104, 1262, 1331
AhlI ACTAGT 1 cut(s) 335
AjiI CACGTC 1 cut(s) 515
AjnI CCWGG 1 cut(s) 1124
Alw21I GWGCWC 3 cut(s) 514, 568, 1198
Alw26I GTCTC 3 cut(s) 326, 1198, 1264
Alw44I GTGCAC 1 cut(s) 510
AlwI GGATC 2 cut(s) 314, 1007
Ama87I CYCGRG 1 cut(s) 561
ApaLI GTGCAC 1 cut(s) 510
ApeKI GCWGC 5 cut(s) 148, 1151, 1154, 1235, 1241
ApoI RAATTY 3 cut(s) 82, 419, 1105
AspLEI GCGC 1 cut(s) 720
AspS9I GGNCC 1 cut(s) 537
AsuC2I CCSGG 1 cut(s) 541
AsuHPI GGTGA 3 cut(s) 329, 817, 932
AvaI CYCGRG 1 cut(s) 561
AvaII GGWCC 1 cut(s) 537
BaeGI GKGCMC 1 cut(s) 514
BanII GRGCYC 2 cut(s) 303, 460
BauI CACGAG 2 cut(s) 483, 567
Bbv12I GWGCWC 3 cut(s) 514, 568, 1198
BbvI GCAGC 5 cut(s) 160, 1138, 1166, 1222, 1228
BccI CCATC 5 cut(s) 191, 796, 989, 1061, 1168
BceAI ACGGC 1 cut(s) 705
BcgI CGANNNNNNTGC 2 cut(s) 1143, 1177
BciT130I CCWGG 1 cut(s) 1126
BciVI GTATCC 1 cut(s) 568
BcnI CCSGG 1 cut(s) 541
BcoDI GTCTC 3 cut(s) 326, 1198, 1264
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 2 cut(s) 336, 660
BfmI CTRYAG 5 cut(s) 12, 36, 324, 1152, 1199
BfrI CTTAAG 2 cut(s) 548, 1265
BfuI GTATCC 1 cut(s) 568
BglI GCCNNNNNGGC 2 cut(s) 707, 767
BglII AGATCT 1 cut(s) 248
BisI GCNGC 7 cut(s) 149, 675, 1152, 1155, 1236, 1239, 1242
BlsI GCNGC 7 cut(s) 150, 676, 1153, 1156, 1237, 1240, 1243
Bme1390I CCNGG 2 cut(s) 541, 1126
Bme18I GGWCC 1 cut(s) 537
BmeT110I CYCGRG 1 cut(s) 561
BmgBI CACGTC 1 cut(s) 515
BmgT120I GGNCC 1 cut(s) 537
BmiI GGNNCC 2 cut(s) 538, 700
BmrFI CCNGG 2 cut(s) 541, 1126
BmsI GCATC 6 cut(s) 376, 424, 493, 547, 748, 1048
BplI GAGNNNNNCTC 2 cut(s) 376, 408
BpmI CTGGAG 3 cut(s) 382, 985, 1321
Bpu10I CCTNAGC 1 cut(s) 1135
BpuEI CTTGAG 1 cut(s) 1046
BpuMI CCSGG 1 cut(s) 541
Bsa29I ATCGAT 1 cut(s) 1163
BsaBI GATNNNNATC 2 cut(s) 366, 1221
BsaHI GRCGYC 2 cut(s) 163, 974
BsaJI CCNNGG 1 cut(s) 1146
BsaWI WCCGGW 1 cut(s) 798
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse1I ACTGG 3 cut(s) 371, 399, 968
Bse3DI GCAATG 5 cut(s) 118, 436, 469, 756, 1068
Bse8I GATNNNNATC 2 cut(s) 366, 1221
BseBI CCWGG 1 cut(s) 1126
BseCI ATCGAT 1 cut(s) 1163
BseDI CCNNGG 1 cut(s) 1146
BseGI GGATG 4 cut(s) 367, 508, 807, 1072
BseJI GATNNNNATC 2 cut(s) 366, 1221
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMI GCAATG 5 cut(s) 118, 436, 469, 756, 1068
BseMII CTCAG 4 cut(s) 134, 257, 372, 603
BseNI ACTGG 3 cut(s) 371, 399, 968
BseSI GKGCMC 1 cut(s) 514
BseXI GCAGC 5 cut(s) 160, 1138, 1166, 1222, 1228
BseYI CCCAGC 1 cut(s) 868
Bsh1236I CGCG 1 cut(s) 1211
BshVI ATCGAT 1 cut(s) 1163
BsiHKAI GWGCWC 3 cut(s) 514, 568, 1198
BsiHKCI CYCGRG 1 cut(s) 561
BsiSI CCGG 3 cut(s) 540, 799, 1226
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 3 cut(s) 326, 1198, 1264
BsoBI CYCGRG 1 cut(s) 561
Bsp1286I GDGCHC 5 cut(s) 303, 460, 514, 568, 1198
Bsp1407I TGTACA 1 cut(s) 816
Bsp143I GATC 7 cut(s) 183, 248, 319, 636, 934, 1012, 1051
BspACI CCGC 3 cut(s) 675, 1211, 1239
BspCNI CTCAG 4 cut(s) 135, 256, 373, 604
BspDI ATCGAT 1 cut(s) 1163
BspFNI CGCG 1 cut(s) 1211
BspHI TCATGA 1 cut(s) 793
BspLI GGNNCC 2 cut(s) 538, 700
BspMAI CTGCAG 4 cut(s) 16, 40, 328, 1156
BspPI GGATC 2 cut(s) 314, 1007
BspQI GCTCTTC 1 cut(s) 1014
BspTI CTTAAG 2 cut(s) 548, 1265
BsrDI GCAATG 5 cut(s) 118, 436, 469, 756, 1068
BsrGI TGTACA 1 cut(s) 816
BsrI ACTGG 3 cut(s) 371, 399, 968
BssECI CCNNGG 1 cut(s) 1146
BssMI GATC 7 cut(s) 183, 248, 319, 636, 934, 1012, 1051
BssNI GRCGYC 2 cut(s) 163, 974
BssSI CACGAG 2 cut(s) 483, 567
BssT1I CCWWGG 1 cut(s) 1146
Bst2BI CACGAG 2 cut(s) 483, 567
Bst2UI CCWGG 1 cut(s) 1126
Bst4CI ACNGT 3 cut(s) 256, 317, 593
Bst6I CTCTTC 1 cut(s) 1014
BstACI GRCGYC 2 cut(s) 163, 974
BstAFI CTTAAG 2 cut(s) 548, 1265
BstAPI GCANNNNNTGC 2 cut(s) 11, 1235
BstAUI TGTACA 1 cut(s) 816
BstC8I GCNNGC 2 cut(s) 16, 460
BstDEI CTNAG 6 cut(s) 143, 243, 381, 612, 703, 1135
BstF5I GGATG 4 cut(s) 367, 508, 807, 1072
BstFNI CGCG 1 cut(s) 1211
BstHHI GCGC 1 cut(s) 720
BstKTI GATC 7 cut(s) 186, 251, 322, 639, 937, 1015, 1054
BstMAI GTCTC 3 cut(s) 326, 1198, 1264
BstMBI GATC 7 cut(s) 183, 248, 319, 636, 934, 1012, 1051
BstMWI GCNNNNNNNGC 8 cut(s) 11, 707, 767, 880, 1151, 1235, 1241, 1250
BstNI CCWGG 1 cut(s) 1126
BstNSI RCATGY 1 cut(s) 868
BstSCI CCNGG 2 cut(s) 539, 1124
BstSFI CTRYAG 5 cut(s) 12, 36, 324, 1152, 1199
BstSLI GKGCMC 1 cut(s) 514
BstUI CGCG 1 cut(s) 1211
BstV1I GCAGC 5 cut(s) 160, 1138, 1166, 1222, 1228
BstX2I RGATCY 1 cut(s) 248
BstXI CCANNNNNNTGG 2 cut(s) 1147, 1167
BstYI RGATCY 1 cut(s) 248
Bsu15I ATCGAT 1 cut(s) 1163
BsuI GTATCC 1 cut(s) 568
BsuTUI ATCGAT 1 cut(s) 1163
BtrI CACGTC 1 cut(s) 515
BtsCI GGATG 4 cut(s) 367, 508, 807, 1072
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 45, 234
Cac8I GCNNGC 2 cut(s) 16, 460
CciI TCATGA 1 cut(s) 793
CfoI GCGC 1 cut(s) 720
Cfr13I GGNCC 1 cut(s) 537
ClaI ATCGAT 1 cut(s) 1163
CseI GACGC 1 cut(s) 963
Csp6I GTAC 1 cut(s) 817
CviAII CATG 3 cut(s) 94, 794, 865
CviQI GTAC 1 cut(s) 817
DdeI CTNAG 6 cut(s) 143, 243, 381, 612, 703, 1135
DpnI GATC 7 cut(s) 185, 250, 321, 638, 936, 1014, 1053
DpnII GATC 7 cut(s) 183, 248, 319, 636, 934, 1012, 1051
DraIII CACNNNGTG 1 cut(s) 347
Eam1104I CTCTTC 1 cut(s) 1014
EarI CTCTTC 1 cut(s) 1014
Eco130I CCWWGG 1 cut(s) 1146
Eco24I GRGCYC 2 cut(s) 303, 460
Eco47I GGWCC 1 cut(s) 537
Eco57I CTGAAG 3 cut(s) 429, 1008, 1038
Eco88I CYCGRG 1 cut(s) 561
EcoRII CCWGG 1 cut(s) 1124
EcoT14I CCWWGG 1 cut(s) 1146
EcoT38I GRGCYC 2 cut(s) 303, 460
ErhI CCWWGG 1 cut(s) 1146
FaeI CATG 3 cut(s) 97, 797, 868
FatI CATG 3 cut(s) 93, 793, 864
FauNDI CATATG 1 cut(s) 70
Fnu4HI GCNGC 7 cut(s) 149, 675, 1152, 1155, 1236, 1239, 1242
FokI GGATG 4 cut(s) 354, 515, 814, 1079
FriOI GRGCYC 2 cut(s) 303, 460
Fsp4HI GCNGC 7 cut(s) 149, 675, 1152, 1155, 1236, 1239, 1242
FspBI CTAG 2 cut(s) 336, 660
GlaI GCGC 1 cut(s) 719
GluI GCNGC 7 cut(s) 149, 675, 1152, 1155, 1236, 1239, 1242
GsaI CCCAGC 1 cut(s) 872
GsuI CTGGAG 3 cut(s) 382, 985, 1321
HapII CCGG 3 cut(s) 540, 799, 1226
HgaI GACGC 1 cut(s) 963
HhaI GCGC 1 cut(s) 720
Hin1I GRCGYC 2 cut(s) 163, 974
Hin1II CATG 3 cut(s) 97, 797, 868
Hin6I GCGC 1 cut(s) 718
HinP1I GCGC 1 cut(s) 718
HindIII AAGCTT 3 cut(s) 411, 551, 957
HinfI GANTC 5 cut(s) 75, 239, 656, 1171, 1206
HpaII CCGG 3 cut(s) 540, 799, 1226
HphI GGTGA 3 cut(s) 329, 817, 932
Hpy166II GTNNAC 5 cut(s) 221, 341, 512, 1170, 1308
Hpy188I TCNGA 4 cut(s) 246, 382, 856, 988
Hpy188III TCNNGA 9 cut(s) 270, 518, 660, 794, 905, 953, 1016, 1055, 1112
Hpy8I GTNNAC 5 cut(s) 221, 341, 512, 1170, 1308
HpyAV CCTTC 3 cut(s) 125, 629, 1283
HpyCH4III ACNGT 3 cut(s) 256, 317, 593
HpyCH4IV ACGT 4 cut(s) 163, 514, 522, 745
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 707, 767, 880, 1151, 1235, 1241, 1250
HpyF3I CTNAG 6 cut(s) 143, 243, 381, 612, 703, 1135
HpySE526I ACGT 4 cut(s) 163, 514, 522, 745
Hsp92I GRCGYC 2 cut(s) 163, 974
Hsp92II CATG 3 cut(s) 97, 797, 868
HspAI GCGC 1 cut(s) 718
Kzo9I GATC 7 cut(s) 183, 248, 319, 636, 934, 1012, 1051
LguI GCTCTTC 1 cut(s) 1014
LmnI GCTCC 2 cut(s) 698, 1193
Lsp1109I GCAGC 5 cut(s) 160, 1138, 1166, 1222, 1228
LweI GCATC 6 cut(s) 376, 424, 493, 547, 748, 1048
MaeI CTAG 2 cut(s) 336, 660
MaeII ACGT 4 cut(s) 163, 514, 522, 745
MaeIII GTNAC 2 cut(s) 40, 692
MalI GATC 7 cut(s) 185, 250, 321, 638, 936, 1014, 1053
MboI GATC 7 cut(s) 183, 248, 319, 636, 934, 1012, 1051
MboII GAAGA 7 cut(s) 371, 613, 616, 767, 1031, 1343, 1376
MfeI CAATTG 1 cut(s) 1230
MflI RGATCY 1 cut(s) 248
MhlI GDGCHC 5 cut(s) 303, 460, 514, 568, 1198
MluCI AATT 9 cut(s) 82, 419, 585, 820, 948, 999, 1035, 1105, 1230
MlyI GAGTC 4 cut(s) 233, 665, 1165, 1200
MmeI TCCRAC 1 cut(s) 480
MnlI CCTC 9 cut(s) 138, 266, 447, 489, 565, 700, 1207, 1279, 1296
MseI TTAA 6 cut(s) 26, 80, 549, 641, 1034, 1266
MslI CAYNNNNRTG 3 cut(s) 98, 690, 1165
MspA1I CMGCKG 2 cut(s) 677, 1241
MspCI CTTAAG 2 cut(s) 548, 1265
MspI CCGG 3 cut(s) 540, 799, 1226
MspR9I CCNGG 2 cut(s) 541, 1126
MunI CAATTG 1 cut(s) 1230
MvaI CCWGG 1 cut(s) 1126
MvnI CGCG 1 cut(s) 1211
MwoI GCNNNNNNNGC 8 cut(s) 11, 707, 767, 880, 1151, 1235, 1241, 1250
NciI CCSGG 1 cut(s) 541
NdeI CATATG 1 cut(s) 70
NdeII GATC 7 cut(s) 183, 248, 319, 636, 934, 1012, 1051
NlaIII CATG 3 cut(s) 97, 797, 868
NlaIV GGNNCC 2 cut(s) 538, 700
NmuCI GTSAC 2 cut(s) 40, 692
NspI RCATGY 1 cut(s) 868
PaeR7I CTCGAG 1 cut(s) 561
PagI TCATGA 1 cut(s) 793
PciSI GCTCTTC 1 cut(s) 1014
PfeI GAWTC 1 cut(s) 75
PkrI GCNGC 7 cut(s) 150, 676, 1153, 1156, 1237, 1240, 1243
PleI GAGTC 4 cut(s) 233, 664, 1165, 1200
PpsI GAGTC 4 cut(s) 233, 664, 1165, 1200
PsiI TTATAA 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 1124
PspFI CCCAGC 1 cut(s) 868
PspGI CCWGG 1 cut(s) 1124
PspN4I GGNNCC 2 cut(s) 538, 700
PspPI GGNCC 1 cut(s) 537
PspXI VCTCGAGB 1 cut(s) 561
PsrI GAACNNNNNNTAC 2 cut(s) 268, 300
PstI CTGCAG 4 cut(s) 16, 40, 328, 1156
PsuI RGATCY 1 cut(s) 248
RsaI GTAC 1 cut(s) 818
RsaNI GTAC 1 cut(s) 817
RseI CAYNNNNRTG 3 cut(s) 98, 690, 1165
SapI GCTCTTC 1 cut(s) 1014
SaqAI TTAA 6 cut(s) 26, 80, 549, 641, 1034, 1266
SatI GCNGC 7 cut(s) 149, 675, 1152, 1155, 1236, 1239, 1242
Sau3AI GATC 7 cut(s) 183, 248, 319, 636, 934, 1012, 1051
Sau96I GGNCC 1 cut(s) 537
SbfI CCTGCAGG 1 cut(s) 328
SchI GAGTC 4 cut(s) 233, 665, 1165, 1200
ScrFI CCNGG 2 cut(s) 541, 1126
SdaI CCTGCAGG 1 cut(s) 328
SduI GDGCHC 5 cut(s) 303, 460, 514, 568, 1198
SfaNI GCATC 6 cut(s) 376, 424, 493, 547, 748, 1048
SfcI CTRYAG 5 cut(s) 12, 36, 324, 1152, 1199
Sfr274I CTCGAG 1 cut(s) 561
SinI GGWCC 1 cut(s) 537
SlaI CTCGAG 1 cut(s) 561
SmiMI CAYNNNNRTG 3 cut(s) 98, 690, 1165
SmlI CTYRAG 4 cut(s) 548, 561, 1025, 1265
SmoI CTYRAG 4 cut(s) 548, 561, 1025, 1265
SpeI ACTAGT 1 cut(s) 335
Sse8387I CCTGCAGG 1 cut(s) 328
Sse9I AATT 9 cut(s) 82, 419, 585, 820, 948, 999, 1035, 1105, 1230
SsiI CCGC 3 cut(s) 675, 1211, 1239
SspI AATATT 1 cut(s) 790
SspMI CTAG 2 cut(s) 336, 660
StyD4I CCNGG 2 cut(s) 539, 1124
StyI CCWWGG 1 cut(s) 1146
TaaI ACNGT 3 cut(s) 256, 317, 593
TaiI ACGT 4 cut(s) 166, 517, 525, 748
TaqI TCGA 3 cut(s) 562, 1056, 1163
TasI AATT 9 cut(s) 82, 419, 585, 820, 948, 999, 1035, 1105, 1230
TatI WGTACW 1 cut(s) 816
TauI GCSGC 2 cut(s) 677, 1241
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 6 cut(s) 26, 80, 549, 641, 1034, 1266
Tru9I TTAA 6 cut(s) 26, 80, 549, 641, 1034, 1266
TscAI CASTG 2 cut(s) 45, 241
TseFI GTSAC 2 cut(s) 40, 692
TseI GCWGC 5 cut(s) 148, 1151, 1154, 1235, 1241
Tsp45I GTSAC 2 cut(s) 40, 692
TspDTI ATGAA 5 cut(s) 107, 611, 782, 1328, 1377
TspGWI ACGGA 3 cut(s) 593, 711, 722
TspRI CASTG 2 cut(s) 45, 241
Vha464I CTTAAG 2 cut(s) 548, 1265
VneI GTGCAC 1 cut(s) 510
VpaK11BI GGWCC 1 cut(s) 537
XapI RAATTY 3 cut(s) 82, 419, 1105
XbaI TCTAGA 1 cut(s) 659
XceI RCATGY 1 cut(s) 868
XhoI CTCGAG 1 cut(s) 561
XspI CTAG 2 cut(s) 336, 660
ZraI GACGTC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.