Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0004179

Physical Location & Seq

Genomic Coordinates Forward (+)

38616758 .. 38622541

Gene Structure 5784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG308200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGGCACTGTCTGCAAGCAAGGTCGCAAGCTGTCCTGGGGTGACTAATTCAAATACTCTTCATAAATGCTATGGAATTTCAAATAACTTTGCCAAGTTAGTGCAACGGAATAACTTTCACTGTCCAAGTCGAGGAGTGGAACGGAAGCAGCTAAAGTATGGATGTCTATTGACAGAGAAAAAGAACTATTCCAATGATGGGTTGTGGCGTATGTTTAGTAACCCAGTTAGTTTCACTGTCTCTCAGAGATCGATTGTCGCACACCTGTCAAGAGGAACTCATAATACCAAAGAAAAAGAAGGAATTATTACTTATGGTGATTGTGCAGAGAAGACTTGTTCACAGATTGGAGACGAAGATGAATGTCAAGTCTTTCCTGAGAGAACTATTAGCTCCAGTCAGGGCTTAACTGAAGCTTGTAAATTTGTTCACAATGATGCAAAGTTTGTAAATGAAAGGGCTCGCAATGACATTATCCTGCTGTCTCGTGGCATATTGAGATTGGATGCTCGTGCGCGTCAAGATGTTGCTATTCTTGGGTCAGAGTTTCTTAAGCTTGATGCTCGGGCAAGAGAGGATACTGAAAAAATTGACCGTAAGGTGAAGAAGAAAGCTGAGCGCCTTCATCATATTGCTAGGATCTTAAAAGACAAAGCAGAGTCTAGGTTGAAAAGTGTTGCCGATAAGCATTGGAGTGACGGAGCCTTAGAGGCTGATCTCCGCCGTGCTGACATCCGTGCCAAACAACGTGCAATGCAAGATGCCCTAATGGCTTTGGAGTTTGTCAAAGACATTCTTGACATGATGGTGAGCAAAATGTACAATTTTCCTCTGCAGAGAGTAGATGGCATTCAATCAGAAAATGATAAACTGGGGCGTATAATGCTCGAAAAGAATGGCATAACTCTTAATTTCCCTCCAGGGGTAGTATCTACTGATCAAATTACTGCAATTCAGGAAGCTTACTGGAGTATGGCATCTGCCCTCTCTGAAGCTGATGGAATTGACTATACTGATCCTGAAGAGCTTGAGTTGTTAATTGCAACTCTTATAGATCTTGATGCCATGGATGGTAAAAGTAGTGTATCCTTGTTGGCAGAGTGTTCTAGTTCCCCTGATGTCAATACTAGGCAAGCATTAGCCAATGCTTTGGCTGCAGCTCCATCTATGTGGACGTTGGGTAATGCAGGAATGGGAGCCTTGCAGAGACTGGCAGACGATAGCAACCCGACAATTGCTGCTGCAGCAACTAAAGCAATCTATGAACTTAAGAAACAATGGGAGATAGAGGAAGGAGATAACTGGAGGTTTACAATGAACCAATATAGCATGGAAGAAAAAGGAGAAGACCAAGAAGCTGATAATGATTCAGATACAGATTATAGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010150 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0072593 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

463

Amino Acids

51.68

Weight (kDa)

5.58

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66330 AT1G66330
fragaria_vesca	FvH4_1g28740 FvH4_1g28740 FvH4_1g28740 FvH4_1g28740 FvH4_1g28740
malus_domestica	MD09G1263800.v1.1 MD17G1258600.v1.1 MD17G1259100.v1.1
prunus_persica	Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1
pyrus_communis	pycom09g17770
rosa_chinensis	RchiOBHm_Chr3g0493131 RchiOBHm_Chr7g0216651
rosa_laevigata	RLG00000022727
rosa_multiflora	Rmu_sc0008053.1_g000028 Rmu_sc0008162.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071580 Rroxscaffold_6G00391790 Rroxscaffold_7G00204460
rosa_rugosa	Rorug03G0259300
rosa_samantha	Rh3AG308200 Rh3BG344400 Rh3CG341500 Rh3DG343700 Rh5BG260800
rosa_wichuraiana	Rw0G002850 Rw0G018320 Rw2G023320 Rw3G027110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	517
AciI	CCGC	1 cut(s)	721
AclWI	GGATC	2 cut(s)	647, 1010
AcsI	RAATTY	2 cut(s)	75, 422
AcuI	CTGAAG	3 cut(s)	432, 1011, 1041
AfaI	GTAC	1 cut(s)	821
AfiI	CCNNNNNNNGG	3 cut(s)	131, 198, 922
AflII	CTTAAG	2 cut(s)	551, 1268
AgsI	TTSAA	4 cut(s)	51, 81, 670, 854
AjnI	CCWGG	2 cut(s)	34, 919
Alw26I	GTCTC	4 cut(s)	244, 345, 489, 1201
AlwI	GGATC	2 cut(s)	647, 1010
AlwNI	CAGNNNCTG	1 cut(s)	1210
Ama87I	CYCGRG	1 cut(s)	564
ApeKI	GCWGC	6 cut(s)	148, 1154, 1157, 1238, 1241, 1244
ApoI	RAATTY	2 cut(s)	75, 422
AspLEI	GCGC	2 cut(s)	517, 621
AsuHPI	GGTGA	4 cut(s)	52, 329, 613, 820
AvaI	CYCGRG	1 cut(s)	564
BanII	GRGCYC	1 cut(s)	463
BauI	CACGAG	2 cut(s)	486, 510
BbsI	GAAGAC	2 cut(s)	338, 1353
BbvI	GCAGC	6 cut(s)	160, 1141, 1169, 1225, 1228, 1256
BccI	CCATC	6 cut(s)	191, 799, 839, 992, 1064, 1171
BceAI	ACGGC	1 cut(s)	708
BciT130I	CCWGG	2 cut(s)	36, 921
BciVI	GTATCC	2 cut(s)	571, 1096
BclI	TGATCA	1 cut(s)	937
BcoDI	GTCTC	4 cut(s)	244, 345, 489, 1201
BfaI	CTAG	4 cut(s)	636, 663, 1107, 1128
BfmI	CTRYAG	3 cut(s)	833, 1155, 1242
BfoI	RGCGCY	1 cut(s)	622
BfrI	CTTAAG	2 cut(s)	551, 1268
BfuI	GTATCC	2 cut(s)	571, 1096
BglI	GCCNNNNNGGC	2 cut(s)	710, 770
BglII	AGATCT	1 cut(s)	1054
BisI	GCNGC	6 cut(s)	149, 1155, 1158, 1239, 1242, 1245
BlpI	GCTNAGC	1 cut(s)	615
BlsI	GCNGC	6 cut(s)	150, 1156, 1159, 1240, 1243, 1246
Bme1390I	CCNGG	2 cut(s)	36, 921
BmeT110I	CYCGRG	1 cut(s)	564
BmiI	GGNNCC	2 cut(s)	703, 1198
BmrFI	CCNGG	2 cut(s)	36, 921
BmrI	ACTGGG	2 cut(s)	218, 881
BmsI	GCATC	6 cut(s)	427, 496, 550, 751, 986, 1051
BmuI	ACTGGG	2 cut(s)	218, 881
BpiI	GAAGAC	2 cut(s)	338, 1353
BpmI	CTGGAG	4 cut(s)	379, 903, 988, 1324
Bpu1102I	GCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	1049
Bsa29I	ATCGAT	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	35, 920, 1065
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 198, 922
Bse1I	ACTGG	6 cut(s)	224, 396, 876, 971, 1215, 1307
Bse3DI	GCAATG	2 cut(s)	472, 759
BseBI	CCWGG	2 cut(s)	36, 921
BseCI	ATCGAT	1 cut(s)	251
BseDI	CCNNGG	3 cut(s)	35, 920, 1065
BseGI	GGATG	4 cut(s)	167, 511, 732, 1075
BseLI	CCNNNNNNNGG	3 cut(s)	131, 198, 922
BseMI	GCAATG	2 cut(s)	472, 759
BseMII	CTCAG	3 cut(s)	257, 369, 606
BseNI	ACTGG	6 cut(s)	224, 396, 876, 971, 1215, 1307
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	6 cut(s)	160, 1141, 1169, 1225, 1228, 1256
BsgI	GTGCAG	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	517
BshVI	ATCGAT	1 cut(s)	251
BsiHKCI	CYCGRG	1 cut(s)	564
BslI	CCNNNNNNNGG	3 cut(s)	131, 198, 922
BsmAI	GTCTC	4 cut(s)	244, 345, 489, 1201
BsmBI	CGTCTC	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	849
BsoBI	CYCGRG	1 cut(s)	564
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp1407I	TGTACA	1 cut(s)	819
Bsp143I	GATC	6 cut(s)	248, 639, 715, 937, 1015, 1054
Bsp1720I	GCTNAGC	1 cut(s)	615
Bsp19I	CCATGG	1 cut(s)	1065
BspACI	CCGC	1 cut(s)	721
BspCNI	CTCAG	3 cut(s)	256, 370, 607
BspDI	ATCGAT	1 cut(s)	251
BspFNI	CGCG	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	703, 1198
BspMAI	CTGCAG	3 cut(s)	837, 1159, 1246
BspPI	GGATC	2 cut(s)	647, 1010
BspQI	GCTCTTC	1 cut(s)	1017
BspTI	CTTAAG	2 cut(s)	551, 1268
BsrDI	GCAATG	2 cut(s)	472, 759
BsrGI	TGTACA	1 cut(s)	819
BsrI	ACTGG	6 cut(s)	224, 396, 876, 971, 1215, 1307
BssECI	CCNNGG	3 cut(s)	35, 920, 1065
BssMI	GATC	6 cut(s)	248, 639, 715, 937, 1015, 1054
BssSI	CACGAG	2 cut(s)	486, 510
BssT1I	CCWWGG	1 cut(s)	1065
Bst2BI	CACGAG	2 cut(s)	486, 510
Bst2UI	CCWGG	2 cut(s)	36, 921
Bst4CI	ACNGT	4 cut(s)	9, 122, 238, 596
Bst6I	CTCTTC	2 cut(s)	63, 1017
BstAFI	CTTAAG	2 cut(s)	551, 1268
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	819
BstC8I	GCNNGC	4 cut(s)	16, 28, 463, 1134
BstDEI	CTNAG	4 cut(s)	243, 378, 615, 706
BstDSI	CCRYGG	1 cut(s)	1065
BstF5I	GGATG	4 cut(s)	167, 511, 732, 1075
BstFNI	CGCG	1 cut(s)	517
BstH2I	RGCGCY	1 cut(s)	622
BstHHI	GCGC	2 cut(s)	517, 621
BstKTI	GATC	6 cut(s)	251, 642, 718, 940, 1018, 1057
BstMAI	GTCTC	4 cut(s)	244, 345, 489, 1201
BstMBI	GATC	6 cut(s)	248, 639, 715, 937, 1015, 1054
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 710, 770, 883, 1154, 1244, 1253
BstNI	CCWGG	2 cut(s)	36, 921
BstSCI	CCNGG	2 cut(s)	34, 919
BstSFI	CTRYAG	3 cut(s)	833, 1155, 1242
BstUI	CGCG	1 cut(s)	517
BstV1I	GCAGC	6 cut(s)	160, 1141, 1169, 1225, 1228, 1256
BstV2I	GAAGAC	2 cut(s)	338, 1353
BstX2I	RGATCY	2 cut(s)	639, 1054
BstXI	CCANNNNNNTGG	2 cut(s)	1150, 1170
BstYI	RGATCY	2 cut(s)	639, 1054
Bsu15I	ATCGAT	1 cut(s)	251
BsuI	GTATCC	2 cut(s)	571, 1096
BsuTUI	ATCGAT	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	1065
BtsCI	GGATG	4 cut(s)	167, 511, 732, 1075
BtsIMutI	CAGTG	3 cut(s)	5, 118, 234
Cac8I	GCNNGC	4 cut(s)	16, 28, 463, 1134
CaiI	CAGNNNCTG	1 cut(s)	1210
CfoI	GCGC	2 cut(s)	517, 621
ClaI	ATCGAT	1 cut(s)	251
CseI	GACGC	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	820
CviAII	CATG	3 cut(s)	802, 1066, 1330
CviQI	GTAC	1 cut(s)	820
DdeI	CTNAG	4 cut(s)	243, 378, 615, 706
DpnI	GATC	6 cut(s)	250, 641, 717, 939, 1017, 1056
DpnII	GATC	6 cut(s)	248, 639, 715, 937, 1015, 1054
Eam1104I	CTCTTC	2 cut(s)	63, 1017
EarI	CTCTTC	2 cut(s)	63, 1017
EciI	GGCGGA	1 cut(s)	710
Eco130I	CCWWGG	1 cut(s)	1065
Eco24I	GRGCYC	1 cut(s)	463
Eco57I	CTGAAG	3 cut(s)	432, 1011, 1041
Eco88I	CYCGRG	1 cut(s)	564
EcoRII	CCWGG	2 cut(s)	34, 919
EcoT14I	CCWWGG	1 cut(s)	1065
EcoT38I	GRGCYC	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	1065
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	3 cut(s)	805, 1069, 1333
FalI	AAGNNNNNCTT	2 cut(s)	780, 812
FatI	CATG	3 cut(s)	801, 1065, 1329
FbaI	TGATCA	1 cut(s)	937
Fnu4HI	GCNGC	6 cut(s)	149, 1155, 1158, 1239, 1242, 1245
FokI	GGATG	4 cut(s)	174, 518, 719, 1082
FriOI	GRGCYC	1 cut(s)	463
Fsp4HI	GCNGC	6 cut(s)	149, 1155, 1158, 1239, 1242, 1245
FspBI	CTAG	4 cut(s)	636, 663, 1107, 1128
GlaI	GCGC	2 cut(s)	516, 620
GluI	GCNGC	6 cut(s)	149, 1155, 1158, 1239, 1242, 1245
GsuI	CTGGAG	4 cut(s)	379, 903, 988, 1324
HaeII	RGCGCY	1 cut(s)	622
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	2 cut(s)	517, 621
Hin1II	CATG	3 cut(s)	805, 1069, 1333
Hin6I	GCGC	2 cut(s)	515, 619
HinP1I	GCGC	2 cut(s)	515, 619
HindIII	AAGCTT	3 cut(s)	414, 554, 960
HinfI	GANTC	2 cut(s)	659, 1367
HphI	GGTGA	4 cut(s)	52, 329, 613, 820
Hpy166II	GTNNAC	4 cut(s)	341, 430, 1173, 1311
Hpy188I	TCNGA	5 cut(s)	246, 544, 859, 991, 1372
Hpy188III	TCNNGA	7 cut(s)	270, 377, 521, 797, 956, 1019, 1058
Hpy8I	GTNNAC	4 cut(s)	341, 430, 1173, 1311
HpyAV	CCTTC	3 cut(s)	293, 632, 1286
HpyCH4III	ACNGT	4 cut(s)	9, 122, 238, 596
HpyCH4IV	ACGT	2 cut(s)	748, 1175
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 710, 770, 883, 1154, 1244, 1253
HpyF3I	CTNAG	4 cut(s)	243, 378, 615, 706
HpySE526I	ACGT	2 cut(s)	748, 1175
Hsp92II	CATG	3 cut(s)	805, 1069, 1333
HspAI	GCGC	2 cut(s)	515, 619
Ksp22I	TGATCA	1 cut(s)	937
Kzo9I	GATC	6 cut(s)	248, 639, 715, 937, 1015, 1054
LguI	GCTCTTC	1 cut(s)	1017
LmnI	GCTCC	4 cut(s)	398, 701, 1165, 1196
Lsp1109I	GCAGC	6 cut(s)	160, 1141, 1169, 1225, 1228, 1256
LweI	GCATC	6 cut(s)	427, 496, 550, 751, 986, 1051
MaeI	CTAG	4 cut(s)	636, 663, 1107, 1128
MaeII	ACGT	2 cut(s)	748, 1175
MaeIII	GTNAC	3 cut(s)	40, 218, 695
MalI	GATC	6 cut(s)	250, 641, 717, 939, 1017, 1056
MboI	GATC	6 cut(s)	248, 639, 715, 937, 1015, 1054
MboII	GAAGA	8 cut(s)	50, 343, 368, 616, 619, 1034, 1346, 1358
MfeI	CAATTG	1 cut(s)	1233
MflI	RGATCY	2 cut(s)	639, 1054
MhlI	GDGCHC	1 cut(s)	463
MlyI	GAGTC	1 cut(s)	668
MnlI	CCTC	9 cut(s)	125, 266, 568, 703, 840, 927, 995, 1282, 1299
MseI	TTAA	6 cut(s)	407, 552, 644, 909, 1037, 1269
MslI	CAYNNNNRTG	4 cut(s)	435, 693, 806, 1168
MspCI	CTTAAG	2 cut(s)	551, 1268
MspR9I	CCNGG	2 cut(s)	36, 921
MunI	CAATTG	1 cut(s)	1233
Mva1269I	GAATGC	1 cut(s)	849
MvaI	CCWGG	2 cut(s)	36, 921
MvnI	CGCG	1 cut(s)	517
MwoI	GCNNNNNNNGC	7 cut(s)	11, 710, 770, 883, 1154, 1244, 1253
NcoI	CCATGG	1 cut(s)	1065
NdeII	GATC	6 cut(s)	248, 639, 715, 937, 1015, 1054
NlaIII	CATG	3 cut(s)	805, 1069, 1333
NlaIV	GGNNCC	2 cut(s)	703, 1198
NmuCI	GTSAC	2 cut(s)	40, 695
PciSI	GCTCTTC	1 cut(s)	1017
PctI	GAATGC	1 cut(s)	849
PfeI	GAWTC	1 cut(s)	1367
PkrI	GCNGC	6 cut(s)	150, 1156, 1159, 1240, 1243, 1246
PleI	GAGTC	1 cut(s)	667
PpsI	GAGTC	1 cut(s)	667
Psp6I	CCWGG	2 cut(s)	34, 919
PspGI	CCWGG	2 cut(s)	34, 919
PspN4I	GGNNCC	2 cut(s)	703, 1198
PsrI	GAACNNNNNNTAC	2 cut(s)	268, 300
PstI	CTGCAG	3 cut(s)	837, 1159, 1246
PstNI	CAGNNNCTG	1 cut(s)	1210
PsuI	RGATCY	2 cut(s)	639, 1054
RsaI	GTAC	1 cut(s)	821
RsaNI	GTAC	1 cut(s)	820
RseI	CAYNNNNRTG	4 cut(s)	435, 693, 806, 1168
SapI	GCTCTTC	1 cut(s)	1017
SaqAI	TTAA	6 cut(s)	407, 552, 644, 909, 1037, 1269
SatI	GCNGC	6 cut(s)	149, 1155, 1158, 1239, 1242, 1245
Sau3AI	GATC	6 cut(s)	248, 639, 715, 937, 1015, 1054
SchI	GAGTC	1 cut(s)	668
ScrFI	CCNGG	2 cut(s)	36, 921
SduI	GDGCHC	1 cut(s)	463
SfaNI	GCATC	6 cut(s)	427, 496, 550, 751, 986, 1051
SfcI	CTRYAG	3 cut(s)	833, 1155, 1242
SmiMI	CAYNNNNRTG	4 cut(s)	435, 693, 806, 1168
SmlI	CTYRAG	3 cut(s)	551, 1028, 1268
SmoI	CTYRAG	3 cut(s)	551, 1028, 1268
SsiI	CCGC	1 cut(s)	721
SspMI	CTAG	4 cut(s)	636, 663, 1107, 1128
StyD4I	CCNGG	2 cut(s)	34, 919
StyI	CCWWGG	1 cut(s)	1065
TaaI	ACNGT	4 cut(s)	9, 122, 238, 596
TaiI	ACGT	2 cut(s)	751, 1178
TaqI	TCGA	3 cut(s)	130, 251, 888
TatI	WGTACW	1 cut(s)	819
TfiI	GAWTC	1 cut(s)	1367
Tru1I	TTAA	6 cut(s)	407, 552, 644, 909, 1037, 1269
Tru9I	TTAA	6 cut(s)	407, 552, 644, 909, 1037, 1269
TscAI	CASTG	3 cut(s)	12, 125, 241
TseFI	GTSAC	2 cut(s)	40, 695
TseI	GCWGC	6 cut(s)	148, 1154, 1157, 1238, 1241, 1244
Tsp45I	GTSAC	2 cut(s)	40, 695
TspDTI	ATGAA	6 cut(s)	50, 375, 468, 614, 1278, 1331
TspGWI	ACGGA	4 cut(s)	121, 157, 714, 725
TspRI	CASTG	3 cut(s)	12, 125, 241
Vha464I	CTTAAG	2 cut(s)	551, 1268
XapI	RAATTY	2 cut(s)	75, 422
XspI	CTAG	4 cut(s)	636, 663, 1107, 1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.