Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004179

Physical Location & Seq

Genomic Coordinates Forward (+)

92580329 .. 92596042

Gene Structure 15714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGAAGAGGTGAGCCATGATATTTTTATAGGAACTGAGCTACCAGAAACCAATCACATGGGCCTATTTGCCATTAACTTTTTTGGGACATATTGTACTATAAAAGGAGATGGCATAAATCTTAATTTCCCTCCAGGGGTAGCATCTACTGATCAAATTACTGCAATTCAGCTTGAGTTGTTAATTGCAACTCTTATAGATCTTGATACCATGGATGGTAAAAGTAGTGTATCCTTGTTGGCAGAGTATTCTAGTTCCCCTGATGTCAATACTAGGCAAGCATTAGCCAATGCTTTGGCTGCAGCTCCATCTAAGTGGACGTTGGGTAATGCAGGAATGGGAGCCTTGCAGGTTCTTTGCATTATAATCTCTGTGTTCGTTCTGTGGCATTTGTCTTCCTCTTACCATAAGCTTATCTACTGTGTTTTGATTCCAGGAAAACTAAGAACAAAGCCTAAATTGAAGATGAAGAACAATGAGAGAGAACAAAGGAAACTAATAATGGGTTGTGTCTCTCTATCTGATGCTGATGATCTGCTTTTAACTTTTGATAAGCGTGGGATGTCATCAGAAATCGTCAGAGCATTGACAGAGCAACTAGGTAAATCCCCTAATGTATGGCAGTTTGACACAAGATCAGTTACTACATTTGCTGAACAAAAGTTCTCCAGAGATGGTATTCAAGTAAAAACAGGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010150 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0072593 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

25.57

Weight (kDa)

6.09

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66330 AT1G66330
fragaria_vesca	FvH4_1g28740 FvH4_1g28740 FvH4_1g28740 FvH4_1g28740 FvH4_1g28740
malus_domestica	MD09G1263800.v1.1 MD17G1258600.v1.1 MD17G1259100.v1.1
prunus_persica	Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1
pyrus_communis	pycom09g17770
rosa_chinensis	RchiOBHm_Chr3g0493131 RchiOBHm_Chr7g0216651
rosa_laevigata	RLG00000022727
rosa_multiflora	Rmu_sc0008053.1_g000028 Rmu_sc0008162.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071580 Rroxscaffold_6G00391790 Rroxscaffold_7G00204460
rosa_rugosa	Rorug03G0259300
rosa_samantha	Rh3AG308200 Rh3BG344400 Rh3CG341500 Rh3DG343700 Rh5BG260800
rosa_wichuraiana	Rw0G002850 Rw0G018320 Rw2G023320 Rw3G027110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	365
Acc36I	ACCTGC	1 cut(s)	340
AccB1I	GGYRCC	1 cut(s)	695
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	463, 683
AjnI	CCWGG	2 cut(s)	133, 433
AluBI	AGCT	4 cut(s)	40, 172, 305, 412
AluI	AGCT	4 cut(s)	40, 172, 305, 412
Alw26I	GTCTC	1 cut(s)	517
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	2 cut(s)	299, 302
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	695
BbsI	GAAGAC	1 cut(s)	387
BbvI	GCAGC	2 cut(s)	286, 314
BccI	CCATC	4 cut(s)	104, 209, 316, 668
BciT130I	CCWGG	2 cut(s)	135, 435
BciVI	GTATCC	1 cut(s)	241
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	517
BfaI	CTAG	4 cut(s)	252, 273, 599, 700
BfmI	CTRYAG	1 cut(s)	300
BfuAI	ACCTGC	1 cut(s)	340
BfuI	GTATCC	1 cut(s)	241
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	2 cut(s)	300, 303
BlsI	GCNGC	2 cut(s)	301, 304
Bme1390I	CCNGG	2 cut(s)	135, 435
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	2 cut(s)	343, 697
BmrFI	CCNGG	2 cut(s)	135, 435
BmsI	GCATC	2 cut(s)	152, 514
BpiI	GAAGAC	1 cut(s)	387
BpmI	CTGGAG	2 cut(s)	117, 652
BpuEI	CTTGAG	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	134, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
BseBI	CCWGG	2 cut(s)	135, 435
BseDI	CCNNGG	2 cut(s)	134, 210
BseGI	GGATG	2 cut(s)	220, 567
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	286, 314
BshFI	GGCC	1 cut(s)	63
BshNI	GGYRCC	1 cut(s)	695
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	517
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	63
Bsp143I	GATC	4 cut(s)	151, 199, 532, 635
Bsp19I	CCATGG	1 cut(s)	210
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	343, 697
BspMAI	CTGCAG	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	340
BspT107I	GGYRCC	1 cut(s)	695
BssECI	CCNNGG	2 cut(s)	134, 210
BssMI	GATC	4 cut(s)	151, 199, 532, 635
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	2 cut(s)	135, 435
Bst4CI	ACNGT	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	3 cut(s)	36, 312, 443
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	220, 567
BstKTI	GATC	4 cut(s)	154, 202, 535, 638
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	4 cut(s)	151, 199, 532, 635
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	2 cut(s)	135, 435
BstSCI	CCNGG	2 cut(s)	133, 433
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	286, 314
BstV2I	GAAGAC	1 cut(s)	387
BstX2I	RGATCY	1 cut(s)	199
BstXI	CCANNNNNNTGG	3 cut(s)	58, 295, 315
BstYI	RGATCY	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	220, 567
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	3 cut(s)	17, 58, 211
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	3 cut(s)	36, 312, 443
DpnI	GATC	4 cut(s)	153, 201, 534, 637
DpnII	GATC	4 cut(s)	151, 199, 532, 635
Eco130I	CCWWGG	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	133, 433
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	3 cut(s)	20, 61, 214
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	3 cut(s)	16, 57, 210
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	300, 303
FokI	GGATG	2 cut(s)	227, 574
Fsp4HI	GCNGC	2 cut(s)	300, 303
FspBI	CTAG	4 cut(s)	252, 273, 599, 700
GluI	GCNGC	2 cut(s)	300, 303
GsuI	CTGGAG	2 cut(s)	117, 652
HaeIII	GGCC	1 cut(s)	63
Hin1II	CATG	3 cut(s)	20, 61, 214
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	1 cut(s)	430
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	3 cut(s)	523, 571, 581
Hpy188III	TCNNGA	2 cut(s)	203, 669
Hpy8I	GTNNAC	1 cut(s)	318
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	6 cut(s)	164, 188, 302, 332, 349, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	3 cut(s)	36, 312, 443
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	3 cut(s)	20, 61, 214
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	4 cut(s)	151, 199, 532, 635
LmnI	GCTCC	2 cut(s)	310, 341
Lsp1109I	GCAGC	2 cut(s)	286, 314
LweI	GCATC	2 cut(s)	152, 514
MaeI	CTAG	4 cut(s)	252, 273, 599, 700
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	640
MalI	GATC	4 cut(s)	153, 201, 534, 637
MboI	GATC	4 cut(s)	151, 199, 532, 635
MboII	GAAGA	4 cut(s)	17, 387, 475, 481
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	5 cut(s)	124, 156, 165, 183, 458
MnlI	CCTC	2 cut(s)	141, 409
MseI	TTAA	4 cut(s)	75, 123, 182, 542
MslI	CAYNNNNRTG	1 cut(s)	313
MspR9I	CCNGG	2 cut(s)	135, 435
MvaI	CCWGG	2 cut(s)	135, 435
MwoI	GCNNNNNNNGC	1 cut(s)	299
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	4 cut(s)	151, 199, 532, 635
NlaIII	CATG	3 cut(s)	20, 61, 214
NlaIV	GGNNCC	2 cut(s)	343, 697
PfeI	GAWTC	1 cut(s)	430
PfoI	TCCNGGA	1 cut(s)	433
PkrI	GCNGC	2 cut(s)	301, 304
PsiI	TTATAA	1 cut(s)	365
Psp6I	CCWGG	2 cut(s)	133, 433
PspGI	CCWGG	2 cut(s)	133, 433
PspN4I	GGNNCC	2 cut(s)	343, 697
PspPI	GGNCC	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
RseI	CAYNNNNRTG	1 cut(s)	313
SaqAI	TTAA	4 cut(s)	75, 123, 182, 542
SatI	GCNGC	2 cut(s)	300, 303
Sau3AI	GATC	4 cut(s)	151, 199, 532, 635
Sau96I	GGNCC	1 cut(s)	61
ScrFI	CCNGG	2 cut(s)	135, 435
SetI	ASST	9 cut(s)	12, 42, 174, 307, 323, 354, 414, 604, 697
SfaNI	GCATC	2 cut(s)	152, 514
SfcI	CTRYAG	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	5 cut(s)	124, 156, 165, 183, 458
SspMI	CTAG	4 cut(s)	252, 273, 599, 700
StyD4I	CCNGG	2 cut(s)	133, 433
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	422
TaiI	ACGT	1 cut(s)	323
TasI	AATT	5 cut(s)	124, 156, 165, 183, 458
TatI	WGTACW	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	4 cut(s)	75, 123, 182, 542
Tru9I	TTAA	4 cut(s)	75, 123, 182, 542
TseI	GCWGC	2 cut(s)	299, 302
TspDTI	ATGAA	1 cut(s)	482
XspI	CTAG	4 cut(s)	252, 273, 599, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.