Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00090

Orthogroup ID

OG0004179

Physical Location & Seq

Genomic Coordinates Reverse (-)

52586 .. 58331

Gene Structure 5746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G002850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGCACTGTCTGCAAGCAAGGTCACAAGCTGTCCTGGGGTGGCTAATTCAAATACTCGTCATAAATGCTATGGAATTTCAAATAACTTTGTCAAGTTAGTGCAACGGAATAACTTTCACTGTCCAAGTCAAGGAAGAAAAAACTATTCCAATGATGGGTTGTGGCGTATGTTTAGTAACCCAGTTAGTTTCACTGTCTCTCAGAGATCGATTGTCGCCCACCTGTCAAGAGGAACTCATAATACCAAAGAAAAAGAAGGAATTATTACTTATGGTGATTGTGCAGAGAAGACTTGTTCACAGATTGGAGACGAAGATGAACGTCAAGTCTTTCCTGAGAGAACTATTAGCTCCAGTCAGGGCTTAACTGAAGCTTGTAAATTTGTTCACAATGATGCAAAGTTTGTAAATGAAAGGGCTCGCAATGACATTATCCTCTGCTGTCTCGGTAATATTCATGGCATATTGAGATTGGATGCTCGTGCACGTCAAGGTGTTGCTATTCTTGGGTCAGAGTTTCTTAAGCTTGATGCTCGGGCAAGAGAGGATACTGAAAAAATTGACCGTAAGGTGAAGAAGAAAGCTGAACGCCTTCATCATATTGCTAGGATCTTAAAAGACAAAGCAGAGTCTAGGTTGAAAAGTGTTGCCGATAAGCATTGGAGTGACGGAGCCTTAGAGGCTGATCTCCGCCGTGCTGACATCCGTGCCAAACAACGTGCAATGCAAGATGCCTTAATGGCTTTGGAGTTTGTCAAAGACATTCTTGACATGATGGTGAGCAAAATGTACAATTTTCCTCTGCAGAGAGTAGATGGCATTCAATCAGAAAATGATAAACTGGGGTGTATAATGCTCGAAAAGAATGGCATAACTCTTAATTTCCCTCCAGGGGTAGTATCTACTGATCAAATTACTGCAATTCAGGAAGCTTACTGGAGTATGGCATCTGCCCTCTCTGAAGCTGATGGAATTGACTATACTGATCCTGAAGAGCTTGAGTTGTTAATTGCAACTCTTATAGATCTTGATGCCATGGATGGTAAAAGTAGTGTATCCTTGTTGGCAGAGTGTTCGAGTTCCCCTGATGTCAATACTAGGCAAGCATTAGCCAATGCTCTGGCTGCAGCTCCATCTATGTGGACTTTGGGTAATGCAGGAATGGGAGCCTTGCAGAGATTGGCAGACGATAGCAACCCGACAATTGCTGCTGCAGCAACTAAAGCAATCTATGAACTTAAGAAACAATGGGAGATAGAGGAAGGAGATAACTGGAGGTTTACAATGAACCAATATAGCATGGAAAAAAAAGGAGAAGACCAAGAAGCTGATAATGATTCAGATACGGATTATAGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010150 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0072593 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

453

Amino Acids

50.41

Weight (kDa)

5.72

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66330 AT1G66330
fragaria_vesca	FvH4_1g28740 FvH4_1g28740 FvH4_1g28740 FvH4_1g28740 FvH4_1g28740
malus_domestica	MD09G1263800.v1.1 MD17G1258600.v1.1 MD17G1259100.v1.1
prunus_persica	Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1
pyrus_communis	pycom09g17770
rosa_chinensis	RchiOBHm_Chr3g0493131 RchiOBHm_Chr7g0216651
rosa_laevigata	RLG00000022727
rosa_multiflora	Rmu_sc0008053.1_g000028 Rmu_sc0008162.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071580 Rroxscaffold_6G00391790 Rroxscaffold_7G00204460
rosa_rugosa	Rorug03G0259300
rosa_samantha	Rh3AG308200 Rh3BG344400 Rh3CG341500 Rh3DG343700 Rh5BG260800
rosa_wichuraiana	Rw0G002850 Rw0G018320 Rw2G023320 Rw3G027110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	691
AclWI	GGATC	2 cut(s)	617, 980
AcsI	RAATTY	2 cut(s)	75, 380
AcuI	CTGAAG	3 cut(s)	390, 981, 1011
AfaI	GTAC	1 cut(s)	791
AfiI	CCNNNNNNNGG	3 cut(s)	131, 156, 892
AflII	CTTAAG	2 cut(s)	521, 1238
AgsI	TTSAA	4 cut(s)	51, 81, 640, 824
AjiI	CACGTC	1 cut(s)	488
AjnI	CCWGG	2 cut(s)	34, 889
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	3 cut(s)	202, 303, 449
Alw44I	GTGCAC	1 cut(s)	483
AlwI	GGATC	2 cut(s)	617, 980
Ama87I	CYCGRG	1 cut(s)	534
ApaLI	GTGCAC	1 cut(s)	483
ApeKI	GCWGC	5 cut(s)	1124, 1127, 1208, 1211, 1214
ApoI	RAATTY	2 cut(s)	75, 380
Asp700I	GAANNNNTTC	1 cut(s)	591
AsuHPI	GGTGA	3 cut(s)	287, 583, 790
AvaI	CYCGRG	1 cut(s)	534
BaeGI	GKGCMC	1 cut(s)	487
BanII	GRGCYC	1 cut(s)	421
BauI	CACGAG	1 cut(s)	480
BbsI	GAAGAC	2 cut(s)	296, 1323
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	5 cut(s)	1111, 1139, 1195, 1198, 1226
BccI	CCATC	6 cut(s)	149, 769, 809, 962, 1034, 1141
BceAI	ACGGC	1 cut(s)	678
BcgI	CGANNNNNNTGC	2 cut(s)	1056, 1090
BciT130I	CCWGG	2 cut(s)	36, 891
BciVI	GTATCC	2 cut(s)	541, 1066
BclI	TGATCA	1 cut(s)	907
BcoDI	GTCTC	3 cut(s)	202, 303, 449
BfaI	CTAG	3 cut(s)	606, 633, 1098
BfmI	CTRYAG	3 cut(s)	803, 1125, 1212
BfrI	CTTAAG	2 cut(s)	521, 1238
BfuI	GTATCC	2 cut(s)	541, 1066
BglI	GCCNNNNNGGC	2 cut(s)	680, 740
BglII	AGATCT	1 cut(s)	1024
BisI	GCNGC	5 cut(s)	1125, 1128, 1209, 1212, 1215
BlsI	GCNGC	5 cut(s)	1126, 1129, 1210, 1213, 1216
Bme1390I	CCNGG	2 cut(s)	36, 891
BmeT110I	CYCGRG	1 cut(s)	534
BmgBI	CACGTC	1 cut(s)	488
BmiI	GGNNCC	2 cut(s)	673, 1168
BmrFI	CCNGG	2 cut(s)	36, 891
BmrI	ACTGGG	2 cut(s)	176, 851
BmsI	GCATC	6 cut(s)	385, 466, 520, 721, 956, 1021
BmuI	ACTGGG	2 cut(s)	176, 851
BpiI	GAAGAC	2 cut(s)	296, 1323
BpmI	CTGGAG	4 cut(s)	337, 873, 958, 1294
BpuEI	CTTGAG	1 cut(s)	1019
Bsa29I	ATCGAT	1 cut(s)	209
BsaJI	CCNNGG	3 cut(s)	35, 890, 1035
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 156, 892
Bse1I	ACTGG	5 cut(s)	182, 354, 846, 941, 1277
Bse3DI	GCAATG	2 cut(s)	430, 729
BseBI	CCWGG	2 cut(s)	36, 891
BseCI	ATCGAT	1 cut(s)	209
BseDI	CCNNGG	3 cut(s)	35, 890, 1035
BseGI	GGATG	3 cut(s)	481, 702, 1045
BseLI	CCNNNNNNNGG	3 cut(s)	131, 156, 892
BseMI	GCAATG	2 cut(s)	430, 729
BseMII	CTCAG	2 cut(s)	215, 327
BseNI	ACTGG	5 cut(s)	182, 354, 846, 941, 1277
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	5 cut(s)	1111, 1139, 1195, 1198, 1226
BsgI	GTGCAG	1 cut(s)	303
BshVI	ATCGAT	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	487
BsiHKCI	CYCGRG	1 cut(s)	534
BslI	CCNNNNNNNGG	3 cut(s)	131, 156, 892
BsmAI	GTCTC	3 cut(s)	202, 303, 449
BsmBI	CGTCTC	1 cut(s)	303
BsmI	GAATGC	1 cut(s)	819
BsoBI	CYCGRG	1 cut(s)	534
Bsp1286I	GDGCHC	2 cut(s)	421, 487
Bsp1407I	TGTACA	1 cut(s)	789
Bsp143I	GATC	6 cut(s)	206, 609, 685, 907, 985, 1024
Bsp19I	CCATGG	1 cut(s)	1035
BspACI	CCGC	1 cut(s)	691
BspCNI	CTCAG	2 cut(s)	214, 328
BspDI	ATCGAT	1 cut(s)	209
BspLI	GGNNCC	2 cut(s)	673, 1168
BspMAI	CTGCAG	3 cut(s)	807, 1129, 1216
BspPI	GGATC	2 cut(s)	617, 980
BspQI	GCTCTTC	1 cut(s)	987
BspTI	CTTAAG	2 cut(s)	521, 1238
BsrDI	GCAATG	2 cut(s)	430, 729
BsrGI	TGTACA	1 cut(s)	789
BsrI	ACTGG	5 cut(s)	182, 354, 846, 941, 1277
BssECI	CCNNGG	3 cut(s)	35, 890, 1035
BssMI	GATC	6 cut(s)	206, 609, 685, 907, 985, 1024
BssSI	CACGAG	1 cut(s)	480
BssT1I	CCWWGG	1 cut(s)	1035
Bst2BI	CACGAG	1 cut(s)	480
Bst2UI	CCWGG	2 cut(s)	36, 891
Bst4CI	ACNGT	4 cut(s)	9, 122, 196, 566
Bst6I	CTCTTC	1 cut(s)	987
BstAFI	CTTAAG	2 cut(s)	521, 1238
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	789
BstC8I	GCNNGC	3 cut(s)	16, 421, 1104
BstDEI	CTNAG	3 cut(s)	201, 336, 676
BstDSI	CCRYGG	1 cut(s)	1035
BstF5I	GGATG	3 cut(s)	481, 702, 1045
BstKTI	GATC	6 cut(s)	209, 612, 688, 910, 988, 1027
BstMAI	GTCTC	3 cut(s)	202, 303, 449
BstMBI	GATC	6 cut(s)	206, 609, 685, 907, 985, 1024
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 680, 740, 1124, 1214, 1223
BstNI	CCWGG	2 cut(s)	36, 891
BstSCI	CCNGG	2 cut(s)	34, 889
BstSFI	CTRYAG	3 cut(s)	803, 1125, 1212
BstSLI	GKGCMC	1 cut(s)	487
BstV1I	GCAGC	5 cut(s)	1111, 1139, 1195, 1198, 1226
BstV2I	GAAGAC	2 cut(s)	296, 1323
BstX2I	RGATCY	2 cut(s)	609, 1024
BstXI	CCANNNNNNTGG	2 cut(s)	1120, 1140
BstYI	RGATCY	2 cut(s)	609, 1024
Bsu15I	ATCGAT	1 cut(s)	209
BsuI	GTATCC	2 cut(s)	541, 1066
BsuTUI	ATCGAT	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	1035
BtrI	CACGTC	1 cut(s)	488
BtsCI	GGATG	3 cut(s)	481, 702, 1045
BtsIMutI	CAGTG	3 cut(s)	5, 118, 192
Cac8I	GCNNGC	3 cut(s)	16, 421, 1104
ClaI	ATCGAT	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	790
CviAII	CATG	4 cut(s)	458, 772, 1036, 1300
CviQI	GTAC	1 cut(s)	790
DdeI	CTNAG	3 cut(s)	201, 336, 676
DpnI	GATC	6 cut(s)	208, 611, 687, 909, 987, 1026
DpnII	GATC	6 cut(s)	206, 609, 685, 907, 985, 1024
Eam1104I	CTCTTC	1 cut(s)	987
EarI	CTCTTC	1 cut(s)	987
EciI	GGCGGA	1 cut(s)	680
Eco130I	CCWWGG	1 cut(s)	1035
Eco24I	GRGCYC	1 cut(s)	421
Eco57I	CTGAAG	3 cut(s)	390, 981, 1011
Eco88I	CYCGRG	1 cut(s)	534
EcoRII	CCWGG	2 cut(s)	34, 889
EcoT14I	CCWWGG	1 cut(s)	1035
EcoT38I	GRGCYC	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	1035
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	4 cut(s)	461, 775, 1039, 1303
FalI	AAGNNNNNCTT	2 cut(s)	750, 782
FatI	CATG	4 cut(s)	457, 771, 1035, 1299
FbaI	TGATCA	1 cut(s)	907
Fnu4HI	GCNGC	5 cut(s)	1125, 1128, 1209, 1212, 1215
FokI	GGATG	3 cut(s)	488, 689, 1052
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	5 cut(s)	1125, 1128, 1209, 1212, 1215
FspBI	CTAG	3 cut(s)	606, 633, 1098
GluI	GCNGC	5 cut(s)	1125, 1128, 1209, 1212, 1215
GsuI	CTGGAG	4 cut(s)	337, 873, 958, 1294
Hin1II	CATG	4 cut(s)	461, 775, 1039, 1303
HindIII	AAGCTT	3 cut(s)	372, 524, 930
HinfI	GANTC	2 cut(s)	629, 1337
HphI	GGTGA	3 cut(s)	287, 583, 790
Hpy166II	GTNNAC	5 cut(s)	299, 388, 485, 1143, 1281
Hpy188I	TCNGA	5 cut(s)	204, 514, 829, 961, 1342
Hpy188III	TCNNGA	6 cut(s)	228, 335, 767, 926, 989, 1028
Hpy8I	GTNNAC	5 cut(s)	299, 388, 485, 1143, 1281
HpyAV	CCTTC	3 cut(s)	251, 602, 1256
HpyCH4III	ACNGT	4 cut(s)	9, 122, 196, 566
HpyCH4IV	ACGT	3 cut(s)	322, 487, 718
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 680, 740, 1124, 1214, 1223
HpyF3I	CTNAG	3 cut(s)	201, 336, 676
HpySE526I	ACGT	3 cut(s)	322, 487, 718
Hsp92II	CATG	4 cut(s)	461, 775, 1039, 1303
Ksp22I	TGATCA	1 cut(s)	907
Kzo9I	GATC	6 cut(s)	206, 609, 685, 907, 985, 1024
LguI	GCTCTTC	1 cut(s)	987
LmnI	GCTCC	4 cut(s)	356, 671, 1135, 1166
Lsp1109I	GCAGC	5 cut(s)	1111, 1139, 1195, 1198, 1226
LweI	GCATC	6 cut(s)	385, 466, 520, 721, 956, 1021
MaeI	CTAG	3 cut(s)	606, 633, 1098
MaeII	ACGT	3 cut(s)	322, 487, 718
MaeIII	GTNAC	3 cut(s)	22, 176, 665
MalI	GATC	6 cut(s)	208, 611, 687, 909, 987, 1026
MboI	GATC	6 cut(s)	206, 609, 685, 907, 985, 1024
MboII	GAAGA	7 cut(s)	147, 301, 326, 586, 589, 1004, 1328
MfeI	CAATTG	1 cut(s)	1203
MflI	RGATCY	2 cut(s)	609, 1024
MhlI	GDGCHC	2 cut(s)	421, 487
MlyI	GAGTC	1 cut(s)	638
MnlI	CCTC	9 cut(s)	224, 446, 538, 673, 810, 897, 965, 1252, 1269
MroXI	GAANNNNTTC	1 cut(s)	591
MseI	TTAA	7 cut(s)	365, 522, 614, 737, 879, 1007, 1239
MslI	CAYNNNNRTG	4 cut(s)	393, 663, 776, 1138
MspCI	CTTAAG	2 cut(s)	521, 1238
MspR9I	CCNGG	2 cut(s)	36, 891
MunI	CAATTG	1 cut(s)	1203
Mva1269I	GAATGC	1 cut(s)	819
MvaI	CCWGG	2 cut(s)	36, 891
MwoI	GCNNNNNNNGC	6 cut(s)	11, 680, 740, 1124, 1214, 1223
NcoI	CCATGG	1 cut(s)	1035
NdeII	GATC	6 cut(s)	206, 609, 685, 907, 985, 1024
NlaIII	CATG	4 cut(s)	461, 775, 1039, 1303
NlaIV	GGNNCC	2 cut(s)	673, 1168
NmuCI	GTSAC	2 cut(s)	22, 665
PciSI	GCTCTTC	1 cut(s)	987
PctI	GAATGC	1 cut(s)	819
PdmI	GAANNNNTTC	1 cut(s)	591
PfeI	GAWTC	1 cut(s)	1337
PkrI	GCNGC	5 cut(s)	1126, 1129, 1210, 1213, 1216
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
Psp6I	CCWGG	2 cut(s)	34, 889
PspGI	CCWGG	2 cut(s)	34, 889
PspN4I	GGNNCC	2 cut(s)	673, 1168
PsrI	GAACNNNNNNTAC	2 cut(s)	226, 258
PstI	CTGCAG	3 cut(s)	807, 1129, 1216
PsuI	RGATCY	2 cut(s)	609, 1024
RsaI	GTAC	1 cut(s)	791
RsaNI	GTAC	1 cut(s)	790
RseI	CAYNNNNRTG	4 cut(s)	393, 663, 776, 1138
SapI	GCTCTTC	1 cut(s)	987
SaqAI	TTAA	7 cut(s)	365, 522, 614, 737, 879, 1007, 1239
SatI	GCNGC	5 cut(s)	1125, 1128, 1209, 1212, 1215
Sau3AI	GATC	6 cut(s)	206, 609, 685, 907, 985, 1024
SchI	GAGTC	1 cut(s)	638
ScrFI	CCNGG	2 cut(s)	36, 891
SduI	GDGCHC	2 cut(s)	421, 487
SfaNI	GCATC	6 cut(s)	385, 466, 520, 721, 956, 1021
SfcI	CTRYAG	3 cut(s)	803, 1125, 1212
SmiMI	CAYNNNNRTG	4 cut(s)	393, 663, 776, 1138
SmlI	CTYRAG	3 cut(s)	521, 998, 1238
SmoI	CTYRAG	3 cut(s)	521, 998, 1238
SsiI	CCGC	1 cut(s)	691
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	3 cut(s)	606, 633, 1098
StyD4I	CCNGG	2 cut(s)	34, 889
StyI	CCWWGG	1 cut(s)	1035
TaaI	ACNGT	4 cut(s)	9, 122, 196, 566
TaiI	ACGT	3 cut(s)	325, 490, 721
TaqI	TCGA	3 cut(s)	209, 858, 1076
TatI	WGTACW	1 cut(s)	789
TfiI	GAWTC	1 cut(s)	1337
Tru1I	TTAA	7 cut(s)	365, 522, 614, 737, 879, 1007, 1239
Tru9I	TTAA	7 cut(s)	365, 522, 614, 737, 879, 1007, 1239
TscAI	CASTG	3 cut(s)	12, 125, 199
TseFI	GTSAC	2 cut(s)	22, 665
TseI	GCWGC	5 cut(s)	1124, 1127, 1208, 1211, 1214
Tsp45I	GTSAC	2 cut(s)	22, 665
TspDTI	ATGAA	6 cut(s)	333, 426, 446, 584, 1248, 1301
TspGWI	ACGGA	4 cut(s)	121, 684, 695, 1361
TspRI	CASTG	3 cut(s)	12, 125, 199
Vha464I	CTTAAG	2 cut(s)	521, 1238
VneI	GTGCAC	1 cut(s)	483
XapI	RAATTY	2 cut(s)	75, 380
XmnI	GAANNNNTTC	1 cut(s)	591
XspI	CTAG	3 cut(s)	606, 633, 1098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.