Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004321

Physical Location & Seq

Genomic Coordinates Forward (+)

25230239 .. 25231943

Gene Structure 1705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G67340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTTACCCTCAAGAAAAACTAAGAGAGTCTTCTCCTGTGACTTTACTCCGGGAAGAAAACGCCGACGATGTGTTGTTGTTCCTTCCTCTGTTTCTCCGGTACCGGAAAACACAACCGGAGCCGATTTGCTAGATTCAATTCCAGACGATCTTGTTATCTCTATACTTTGTAAACTTGGCTCTACTTCTCGATGTCCTGCTGATTTCATCAACGTTTTGCTGACATGTAAGAGATTAAAAGGATTAGCTATGAATCCTATTGTGTTGTCGAGATTATCTCCTAAAGCTATCGCTGTTAAAGCTCATAATTGGTCGGAATATTCTCACCGGTTTTTAAAAAGGTGTGTCGACGCCGGAAGTCTCGAAGCTTGTTACACTCTAGGAATGATTCGGTTTTATTGTTTACAAAACAGAGGAAACGGCGCGTCGTTAATGGCTAAAGCCGCGATTAGTTCTCACGCGCCGGCGTTATATTCCTTAGCAGTGATTCAGTTCAACGGAAGCGGTGGTTCAAAGAATGATAAAGATCTTAGAGCCGGTGTGGCTTTATGCGCGCGTGCCGCTTTTCTTGGACACGTCGACGCGCTACGTGAGCTAGGTCACTGTCTTCAAGATGGTTATGGAGTTCCTCAAAACGTCTCTGAAGGTAGGAGGTTTTTAGTTCAAGCCAACGCTCGTGAACTCGCCGCCGTTTTATCTTCCGGTATACAAGCTAGGTCAACGTGGCTTTCTTTATCACAGCCACCACCTCCGGTTGTTCCTAACCATGGTCAACAAACTTGTCCTTTGCTTAGTGATTTTGGATGTAATGTACCGGCACCGGAAACACATCCCGCGAATAGGTTTTTAGCGGATTGGTTCGCTGTTCGCGGCGGAGATTGTCCCGGAGATGGGTTGAGATTGTGTTCACACGCTGGTTGTGGACGACCGGAGACGAGGAAGCATGAGTTTAGGAGATGTTCGGTTTGTGGCGTTGTTAATTATTGTTCACGCGCTTGTCAAGCTTTAGATTGGAAACTCCGGCATAAAATGGATTGTGCTCCGGTGCAACGGTGGCTAGAGGAAGGTGACGGTGGTGAAGGTAACGTTCAGATTGACGGAAATGGTAACGGTGATAATGTTTTGCTTCCAATGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like zf-MYND

Protein Analysis

379

Amino Acids

41.01

Weight (kDa)

9.01

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_27	PF23310	104 - 173	3.8e-11	Plant tetratrico peptide repeats
zf-MYND	PF01753	306 - 346	6.6e-08	MYND finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67340
fragaria_vesca	FvH4_4g23760 FvH4_5g08330
malus_domestica	MD06G1141800.v1.1 MD13G1119000.v1.1 MD14G1157000.v1.1 MD16G1119400.v1.1
prunus_persica	Prupe.1G225800_v2.0.a1 Prupe.5G151000_v2.0.a1
pyrus_communis	pycom13g10380 pycom14g13050 pycom16g10210
rosa_chinensis	RchiOBHm_Chr4g0430251 RchiOBHm_Chr7g0190191
rosa_laevigata	RLG00000004555 RLG00000006990
rosa_multiflora	Rmu_co8361279.1_g000001 Rmu_sc0001089.1_g000023 Rmu_sc0004886.1_g000017
rosa_roxburghii	Rroxscaffold_3G00264800 Rroxscaffold_5G00372050
rosa_rugosa	Rorug04G0241800 Rorug06G0502800
rosa_samantha	Rh4AG298600 Rh4BG305100 Rh4CG320500 Rh4DG302400 Rh7AG108100 Rh7CG113100 Rh7DG111500
rosa_wichuraiana	Rw4G025880 Rw7G009370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	100
AccB1I	GGYRCC	2 cut(s)	100, 817
AccI	GTMKAC	3 cut(s)	348, 579, 706
AccII	CGCG	9 cut(s)	425, 446, 461, 554, 556, 584, 836, 870, 993
AciI	CCGC	8 cut(s)	444, 504, 561, 687, 834, 851, 870, 873
AclI	AACGTT	2 cut(s)	213, 1086
AcuI	CTGAAG	1 cut(s)	663
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	2 cut(s)	102, 813
AfiI	CCNNNNNNNGG	4 cut(s)	767, 840, 890, 891
AflIII	ACRYGT	2 cut(s)	224, 574
AgeI	ACCGGT	1 cut(s)	327
AgsI	TTSAA	5 cut(s)	138, 496, 513, 611, 665
AjiI	CACGTC	1 cut(s)	577
AluBI	AGCT	7 cut(s)	248, 287, 302, 368, 595, 713, 1004
AluI	AGCT	7 cut(s)	248, 287, 302, 368, 595, 713, 1004
Alw21I	GWGCWC	1 cut(s)	1042
Alw26I	GTCTC	3 cut(s)	365, 643, 926
AsiGI	ACCGGT	1 cut(s)	327
Asp718I	GGTACC	1 cut(s)	100
AspLEI	GCGC	6 cut(s)	425, 463, 554, 556, 586, 995
AsuC2I	CCSGG	2 cut(s)	51, 885
AsuHPI	GGTGA	4 cut(s)	317, 1079, 1088, 1124
BanI	GGYRCC	2 cut(s)	100, 817
BauI	CACGAG	1 cut(s)	675
BbsI	GAAGAC	2 cut(s)	22, 599
Bbv12I	GWGCWC	1 cut(s)	1042
BccI	CCATC	2 cut(s)	608, 884
BceAI	ACGGC	2 cut(s)	436, 674
BcnI	CCSGG	2 cut(s)	51, 885
BcoDI	GTCTC	3 cut(s)	365, 643, 926
BfaI	CTAG	5 cut(s)	131, 380, 596, 714, 1058
BglI	GCCNNNNNGGC	1 cut(s)	542
BglII	AGATCT	1 cut(s)	526
BisI	GCNGC	4 cut(s)	444, 561, 687, 871
BlsI	GCNGC	4 cut(s)	445, 562, 688, 872
Bme1390I	CCNGG	2 cut(s)	51, 885
BmgBI	CACGTC	1 cut(s)	577
BmiI	GGNNCC	3 cut(s)	102, 121, 819
BmrFI	CCNGG	2 cut(s)	51, 885
BpiI	GAAGAC	2 cut(s)	22, 599
BplI	GAGNNNNNCTC	2 cut(s)	262, 294
Bpu10I	CCTNAGC	1 cut(s)	478
BpuMI	CCSGG	2 cut(s)	51, 885
BsaAI	YACGTR	1 cut(s)	590
BsaBI	GATNNNNATC	1 cut(s)	525
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	766
BsaWI	WCCGGW	9 cut(s)	97, 103, 116, 327, 701, 751, 820, 928, 1042
Bsc4I	CCNNNNNNNGG	4 cut(s)	767, 840, 890, 891
Bse118I	RCCGGY	4 cut(s)	327, 463, 536, 814
Bse8I	GATNNNNATC	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	766
BseGI	GGATG	2 cut(s)	809, 829
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	4 cut(s)	767, 840, 890, 891
BsePI	GCGCGC	1 cut(s)	552
Bsh1236I	CGCG	9 cut(s)	425, 446, 461, 554, 556, 584, 836, 870, 993
Bsh1285I	CGRYCG	1 cut(s)	929
BshNI	GGYRCC	2 cut(s)	100, 817
BshTI	ACCGGT	1 cut(s)	327
BsiEI	CGRYCG	1 cut(s)	929
BsiHKAI	GWGCWC	1 cut(s)	1042
BslFI	GGGAC	1 cut(s)	867
BslI	CCNNNNNNNGG	4 cut(s)	767, 840, 890, 891
BsmAI	GTCTC	3 cut(s)	365, 643, 926
BsmBI	CGTCTC	2 cut(s)	643, 926
BsmFI	GGGAC	1 cut(s)	867
Bsp1286I	GDGCHC	1 cut(s)	1042
Bsp143I	GATC	2 cut(s)	148, 526
Bsp19I	CCATGG	1 cut(s)	766
BspACI	CCGC	8 cut(s)	444, 504, 561, 687, 834, 851, 870, 873
BspFNI	CGCG	9 cut(s)	425, 446, 461, 554, 556, 584, 836, 870, 993
BspLI	GGNNCC	3 cut(s)	102, 121, 819
BspT107I	GGYRCC	2 cut(s)	100, 817
BsrFI	RCCGGY	4 cut(s)	327, 463, 536, 814
BssAI	RCCGGY	4 cut(s)	327, 463, 536, 814
BssECI	CCNNGG	1 cut(s)	766
BssHII	GCGCGC	1 cut(s)	552
BssMI	GATC	2 cut(s)	148, 526
BssNAI	GTATAC	1 cut(s)	707
BssNI	GRCGYC	1 cut(s)	351
BssSI	CACGAG	1 cut(s)	675
BssT1I	CCWWGG	1 cut(s)	766
Bst1107I	GTATAC	1 cut(s)	707
Bst2BI	CACGAG	1 cut(s)	675
Bst4CI	ACNGT	4 cut(s)	605, 1053, 1073, 1112
BstACI	GRCGYC	1 cut(s)	351
BstBAI	YACGTR	1 cut(s)	590
BstC8I	GCNNGC	3 cut(s)	465, 554, 558
BstDEI	CTNAG	4 cut(s)	21, 478, 530, 791
BstDSI	CCRYGG	1 cut(s)	766
BstF5I	GGATG	2 cut(s)	809, 829
BstFNI	CGCG	9 cut(s)	425, 446, 461, 554, 556, 584, 836, 870, 993
BstHHI	GCGC	6 cut(s)	425, 463, 554, 556, 586, 995
BstKTI	GATC	2 cut(s)	151, 529
BstMAI	GTCTC	3 cut(s)	365, 643, 926
BstMBI	GATC	2 cut(s)	148, 526
BstMCI	CGRYCG	1 cut(s)	929
BstMWI	GCNNNNNNNGC	8 cut(s)	299, 443, 542, 551, 560, 592, 1001, 1054
BstNSI	RCATGY	1 cut(s)	228
BstSCI	CCNGG	2 cut(s)	49, 883
BstUI	CGCG	9 cut(s)	425, 446, 461, 554, 556, 584, 836, 870, 993
BstV2I	GAAGAC	2 cut(s)	22, 599
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BstZ17I	GTATAC	1 cut(s)	707
BtgI	CCRYGG	1 cut(s)	766
BtrI	CACGTC	1 cut(s)	577
BtsCI	GGATG	2 cut(s)	809, 829
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	2 cut(s)	489, 601
Cac8I	GCNNGC	3 cut(s)	465, 554, 558
CfoI	GCGC	6 cut(s)	425, 463, 554, 556, 586, 995
Cfr10I	RCCGGY	4 cut(s)	327, 463, 536, 814
CseI	GACGC	3 cut(s)	359, 414, 590
Csp6I	GTAC	2 cut(s)	101, 812
CspAI	ACCGGT	1 cut(s)	327
CviAII	CATG	3 cut(s)	225, 767, 944
CviQI	GTAC	2 cut(s)	101, 812
DdeI	CTNAG	4 cut(s)	21, 478, 530, 791
DpnI	GATC	2 cut(s)	150, 528
DpnII	GATC	2 cut(s)	148, 526
DraI	TTTAAA	1 cut(s)	336
EciI	GGCGGA	1 cut(s)	888
Eco130I	CCWWGG	1 cut(s)	766
Eco57I	CTGAAG	1 cut(s)	663
EcoT14I	CCWWGG	1 cut(s)	766
ErhI	CCWWGG	1 cut(s)	766
Esp3I	CGTCTC	2 cut(s)	643, 926
FaeI	CATG	3 cut(s)	228, 770, 947
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FaqI	GGGAC	1 cut(s)	867
FatI	CATG	3 cut(s)	224, 766, 943
FauI	CCCGC	1 cut(s)	841
FblI	GTMKAC	3 cut(s)	348, 579, 706
Fnu4HI	GCNGC	4 cut(s)	444, 561, 687, 871
FokI	GGATG	2 cut(s)	816, 816
Fsp4HI	GCNGC	4 cut(s)	444, 561, 687, 871
FspBI	CTAG	5 cut(s)	131, 380, 596, 714, 1058
GlaI	GCGC	6 cut(s)	424, 462, 553, 555, 585, 994
GluI	GCNGC	4 cut(s)	444, 561, 687, 871
HgaI	GACGC	3 cut(s)	359, 414, 590
HhaI	GCGC	6 cut(s)	425, 463, 554, 556, 586, 995
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	3 cut(s)	228, 770, 947
Hin6I	GCGC	6 cut(s)	423, 461, 552, 554, 584, 993
HinP1I	GCGC	6 cut(s)	423, 461, 552, 554, 584, 993
HincII	GTYRAC	4 cut(s)	349, 580, 720, 773
HindII	GTYRAC	4 cut(s)	349, 580, 720, 773
HindIII	AAGCTT	2 cut(s)	366, 1002
HinfI	GANTC	5 cut(s)	27, 134, 253, 388, 487
HphI	GGTGA	4 cut(s)	317, 1079, 1088, 1124
Hpy188I	TCNGA	3 cut(s)	316, 643, 1092
Hpy188III	TCNNGA	7 cut(s)	12, 143, 189, 270, 362, 611, 677
Hpy99I	CGWCG	5 cut(s)	69, 353, 430, 581, 584
HpyAV	CCTTC	4 cut(s)	93, 638, 1058, 1073
HpyCH4III	ACNGT	4 cut(s)	605, 1053, 1073, 1112
HpyCH4IV	ACGT	6 cut(s)	213, 576, 589, 636, 722, 1086
HpyCH4V	TGCA	1 cut(s)	1048
HpyF10VI	GCNNNNNNNGC	8 cut(s)	299, 443, 542, 551, 560, 592, 1001, 1054
HpyF3I	CTNAG	4 cut(s)	21, 478, 530, 791
HpySE526I	ACGT	6 cut(s)	213, 576, 589, 636, 722, 1086
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	3 cut(s)	228, 770, 947
HspAI	GCGC	6 cut(s)	423, 461, 552, 554, 584, 993
KpnI	GGTACC	1 cut(s)	104
KroI	GCCGGC	1 cut(s)	463
KroNI	GCCGGC	1 cut(s)	465
Kzo9I	GATC	2 cut(s)	148, 526
LmnI	GCTCC	2 cut(s)	119, 1045
MaeI	CTAG	5 cut(s)	131, 380, 596, 714, 1058
MaeII	ACGT	6 cut(s)	213, 576, 589, 636, 722, 1086
MaeIII	GTNAC	7 cut(s)	3, 38, 371, 599, 1067, 1082, 1106
MalI	GATC	2 cut(s)	150, 528
MboI	GATC	2 cut(s)	148, 526
MboII	GAAGA	4 cut(s)	22, 66, 599, 690
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	1 cut(s)	1042
MluCI	AATT	3 cut(s)	138, 307, 979
MlyI	GAGTC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	8 cut(s)	19, 97, 407, 639, 645, 759, 930, 1054
MreI	CGCCGGCG	1 cut(s)	463
MroNI	GCCGGC	1 cut(s)	463
MseI	TTAA	6 cut(s)	236, 297, 335, 431, 978, 1138
MspR9I	CCNGG	2 cut(s)	51, 885
MvnI	CGCG	9 cut(s)	425, 446, 461, 554, 556, 584, 836, 870, 993
MwoI	GCNNNNNNNGC	8 cut(s)	299, 443, 542, 551, 560, 592, 1001, 1054
NaeI	GCCGGC	1 cut(s)	465
NciI	CCSGG	2 cut(s)	51, 885
NcoI	CCATGG	1 cut(s)	766
NdeII	GATC	2 cut(s)	148, 526
NgoMIV	GCCGGC	1 cut(s)	463
NlaIII	CATG	3 cut(s)	228, 770, 947
NlaIV	GGNNCC	3 cut(s)	102, 121, 819
NmuCI	GTSAC	3 cut(s)	38, 599, 1067
NspI	RCATGY	1 cut(s)	228
PauI	GCGCGC	1 cut(s)	552
PciI	ACATGT	1 cut(s)	224
PdiI	GCCGGC	1 cut(s)	465
PfeI	GAWTC	4 cut(s)	134, 253, 388, 487
PfoI	TCCNGGA	2 cut(s)	49, 883
PinAI	ACCGGT	1 cut(s)	327
PkrI	GCNGC	4 cut(s)	445, 562, 688, 872
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	590
PscI	ACATGT	1 cut(s)	224
Psp1406I	AACGTT	2 cut(s)	213, 1086
PspN4I	GGNNCC	3 cut(s)	102, 121, 819
PsuI	RGATCY	1 cut(s)	526
PteI	GCGCGC	1 cut(s)	552
RsaI	GTAC	2 cut(s)	102, 813
RsaNI	GTAC	2 cut(s)	101, 812
SalI	GTCGAC	2 cut(s)	347, 578
SaqAI	TTAA	6 cut(s)	236, 297, 335, 431, 978, 1138
SatI	GCNGC	4 cut(s)	444, 561, 687, 871
Sau3AI	GATC	2 cut(s)	148, 526
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	2 cut(s)	51, 885
SduI	GDGCHC	1 cut(s)	1042
SgrAI	CRCCGGYG	1 cut(s)	463
SgrDI	CGTCGACG	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	3 cut(s)	138, 307, 979
SsiI	CCGC	8 cut(s)	444, 504, 561, 687, 834, 851, 870, 873
SspI	AATATT	1 cut(s)	320
SspMI	CTAG	5 cut(s)	131, 380, 596, 714, 1058
StyD4I	CCNGG	2 cut(s)	49, 883
StyI	CCWWGG	1 cut(s)	766
TaaI	ACNGT	4 cut(s)	605, 1053, 1073, 1112
TaiI	ACGT	6 cut(s)	216, 579, 592, 639, 725, 1089
TaqI	TCGA	5 cut(s)	190, 269, 348, 363, 579
TasI	AATT	3 cut(s)	138, 307, 979
TauI	GCSGC	4 cut(s)	446, 563, 689, 873
TfiI	GAWTC	4 cut(s)	134, 253, 388, 487
Tru1I	TTAA	6 cut(s)	236, 297, 335, 431, 978, 1138
Tru9I	TTAA	6 cut(s)	236, 297, 335, 431, 978, 1138
TscAI	CASTG	2 cut(s)	489, 608
TseFI	GTSAC	3 cut(s)	38, 599, 1067
Tsp45I	GTSAC	3 cut(s)	38, 599, 1067
TspDTI	ATGAA	2 cut(s)	196, 266
TspGWI	ACGGA	2 cut(s)	513, 1113
TspRI	CASTG	2 cut(s)	489, 608
XceI	RCATGY	1 cut(s)	228
XmiI	GTMKAC	3 cut(s)	348, 579, 706
XspI	CTAG	5 cut(s)	131, 380, 596, 714, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.