Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004321

Physical Location & Seq

Genomic Coordinates Reverse (-)

61752716 .. 61755211

Gene Structure 2496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0502800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGAGAGGCTGTTGAGTTTTTCCATCTAAACGGTTTCTTGTCATCAAAATTTGATCGTCATGACGAAGTACTCATCAACAATAACGTTAACGGTAACATTAACCATGAAGATATAGATGGTTCTGGCAGCTGGTACGAAGAGACCATTGACGATGATCTGAAATGGTCATTTGCTCTTAATGGTGTTCTGCACAAGGGGGTGAGCGAGTATCAGGAGATAGTTTTACTGGATACCAAGCGTTTTGGCAAGGTATTGGTGATTGATGGGAAGATGCAGAGTGCAGAAGTGGACGAGTTTATATATCATGAATGCTTAATACATCCTGCCCTTTTATCTCACCCAAAGCCTAAGAATGTGTTCATTATGGGAGGTGGGGAAGGGTCAGCTGCAAGAGAAGCCCTTAGGCACAAATTACTTGACAAAGTGGTTATGTGTGACATAGATCAGGAGGTGGTTGATTTCTGTCGCAGGCATTTGACAGTGAACCAAAAGGCCTTTGCTCACAATAAGCTTAACCTTGTTATCAATGATGCCAAGGCTGAATTGGATAAGAGCTGTGAAAAATTCGACATCATAGTGGGAGATTTAGCAGACCCAGTTGAAGGAGGGCCTTGCTATCAGCTTTACACAAAATCCTTCTATGAGAAAATTCTCAAACCCAAGCTTAATCATGGGGGCATTTTTGTGACCCAGGCTGGACCAGCAGGCATTTTCACCCACAAAGAGGTCTTCACCTCTATATTCAACACCATCAAACAGGTCTTCAGGTACGTTGTGGTTTATGCAGCTCACATACCTTCTTTTGCCGATACATGGGGATGGGTCATGGCCTCGGATGAACCTTTCTCTATGAATGCTGAGAAAATGGACAGAAGGATCGAGGAAAGAATTGACGGGGAGTTAAACTACTTGAATGGTGCTCTGTTCATGTCCTCTGCAACCATGAACAAAACTGTTTCTTCATCGTTGTTGAAAGAAACTCATGTCTACACTGAAGAAGATGCTAGGTTTATTCATGGACATGGGGTCGCTTACCGCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sel1 zf-MYND

Protein Analysis

348

Amino Acids

39.34

Weight (kDa)

5.5

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synt_N	PF17284	45 - 96	1.1e-12	Spermidine synthase tetramerisation domain
Spermine_synth	PF01564	99 - 281	1.8e-42	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67340
fragaria_vesca	FvH4_4g23760 FvH4_5g08330
malus_domestica	MD06G1141800.v1.1 MD13G1119000.v1.1 MD14G1157000.v1.1 MD16G1119400.v1.1
prunus_persica	Prupe.1G225800_v2.0.a1 Prupe.5G151000_v2.0.a1
pyrus_communis	pycom13g10380 pycom14g13050 pycom16g10210
rosa_chinensis	RchiOBHm_Chr4g0430251 RchiOBHm_Chr7g0190191
rosa_laevigata	RLG00000004555 RLG00000006990
rosa_multiflora	Rmu_co8361279.1_g000001 Rmu_sc0001089.1_g000023 Rmu_sc0004886.1_g000017
rosa_roxburghii	Rroxscaffold_3G00264800 Rroxscaffold_5G00372050
rosa_rugosa	Rorug04G0241800 Rorug06G0502800
rosa_samantha	Rh4AG298600 Rh4BG305100 Rh4CG320500 Rh4DG302400 Rh7AG108100 Rh7CG113100 Rh7DG111500
rosa_wichuraiana	Rw4G025880 Rw7G009370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	990
AciI	CCGC	1 cut(s)	1039
AclI	AACGTT	1 cut(s)	87
AclWI	GGATC	1 cut(s)	887
AcsI	RAATTY	3 cut(s)	50, 566, 651
AcuI	CTGAAG	2 cut(s)	751, 1017
AfaI	GTAC	3 cut(s)	72, 137, 773
AfiI	CCNNNNNNNGG	3 cut(s)	605, 727, 816
AgsI	TTSAA	4 cut(s)	605, 748, 916, 976
AhdI	GACNNNNNGTC	1 cut(s)	1028
AjnI	CCWGG	1 cut(s)	693
AluBI	AGCT	7 cut(s)	132, 389, 514, 558, 625, 667, 791
AluI	AGCT	7 cut(s)	132, 389, 514, 558, 625, 667, 791
Alw21I	GWGCWC	1 cut(s)	925
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	887
AoxI	GGCC	3 cut(s)	495, 611, 831
ApeKI	GCWGC	3 cut(s)	129, 389, 788
ApoI	RAATTY	3 cut(s)	50, 566, 651
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	611, 701
AsuHPI	GGTGA	5 cut(s)	214, 271, 332, 709, 727
AvaII	GGWCC	1 cut(s)	701
AxyI	CCTNAGG	1 cut(s)	404
BbsI	GAAGAC	2 cut(s)	724, 757
Bbv12I	GWGCWC	1 cut(s)	925
BbvI	GCAGC	3 cut(s)	141, 376, 800
BccI	CCATC	5 cut(s)	33, 113, 260, 761, 816
BciT130I	CCWGG	1 cut(s)	695
BciVI	GTATCC	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	2 cut(s)	1008, 1045
BfuI	GTATCC	1 cut(s)	226
BisI	GCNGC	3 cut(s)	130, 390, 789
BlsI	GCNGC	3 cut(s)	131, 391, 790
BmcAI	AGTACT	1 cut(s)	72
Bme1390I	CCNGG	1 cut(s)	695
Bme18I	GGWCC	1 cut(s)	701
BmeRI	GACNNNNNGTC	1 cut(s)	1028
BmgT120I	GGNCC	2 cut(s)	611, 701
BmrFI	CCNGG	1 cut(s)	695
BmrI	ACTGGG	1 cut(s)	593
BmsI	GCATC	3 cut(s)	264, 523, 994
BmuI	ACTGGG	1 cut(s)	593
BpiI	GAAGAC	2 cut(s)	724, 757
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	537, 693, 834
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	3 cut(s)	605, 727, 816
Bse1I	ACTGG	2 cut(s)	234, 599
Bse21I	CCTNAGG	1 cut(s)	404
BseBI	CCWGG	1 cut(s)	695
BseDI	CCNNGG	3 cut(s)	537, 693, 834
BseGI	GGATG	3 cut(s)	322, 827, 844
BseLI	CCNNNNNNNGG	3 cut(s)	605, 727, 816
BseMII	CTCAG	1 cut(s)	852
BseNI	ACTGG	2 cut(s)	234, 599
BseXI	GCAGC	3 cut(s)	141, 376, 800
BsgI	GTGCAG	2 cut(s)	176, 303
BshFI	GGCC	3 cut(s)	497, 613, 833
BsiHKAI	GWGCWC	1 cut(s)	925
BslI	CCNNNNNNNGG	3 cut(s)	605, 727, 816
BsmAI	GTCTC	1 cut(s)	137
BsmI	GAATGC	2 cut(s)	317, 862
BsnI	GGCC	3 cut(s)	497, 613, 833
Bso31I	GGTCTC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	925
Bsp143I	GATC	4 cut(s)	55, 157, 445, 879
BspACI	CCGC	1 cut(s)	1039
BspANI	GGCC	3 cut(s)	497, 613, 833
BspCNI	CTCAG	1 cut(s)	853
BspHI	TCATGA	2 cut(s)	61, 307
BspPI	GGATC	1 cut(s)	887
BspTNI	GGTCTC	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	234, 599
BssECI	CCNNGG	3 cut(s)	537, 693, 834
BssMI	GATC	4 cut(s)	55, 157, 445, 879
BssT1I	CCWWGG	1 cut(s)	537
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	4 cut(s)	35, 95, 484, 958
Bst6I	CTCTTC	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	473, 709
BstDEI	CTNAG	3 cut(s)	351, 404, 861
BstF5I	GGATG	3 cut(s)	322, 827, 844
BstKTI	GATC	4 cut(s)	58, 160, 448, 882
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	4 cut(s)	55, 157, 445, 879
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 704
BstNI	CCWGG	1 cut(s)	695
BstSCI	CCNGG	1 cut(s)	693
BstV1I	GCAGC	3 cut(s)	141, 376, 800
BstV2I	GAAGAC	2 cut(s)	724, 757
Bsu36I	CCTNAGG	1 cut(s)	404
BsuI	GTATCC	1 cut(s)	226
BsuRI	GGCC	3 cut(s)	497, 613, 833
BtsCI	GGATG	3 cut(s)	322, 827, 844
BtsIMutI	CAGTG	2 cut(s)	489, 993
Cac8I	GCNNGC	2 cut(s)	473, 709
CciI	TCATGA	2 cut(s)	61, 307
Cfr13I	GGNCC	2 cut(s)	611, 701
Csp6I	GTAC	3 cut(s)	71, 136, 772
CviQI	GTAC	3 cut(s)	71, 136, 772
DdeI	CTNAG	3 cut(s)	351, 404, 861
DpnI	GATC	4 cut(s)	57, 159, 447, 881
DpnII	GATC	4 cut(s)	55, 157, 445, 879
DriI	GACNNNNNGTC	1 cut(s)	1028
Eam1104I	CTCTTC	1 cut(s)	135
Eam1105I	GACNNNNNGTC	1 cut(s)	1028
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	537
Eco147I	AGGCCT	1 cut(s)	497
Eco31I	GGTCTC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	701
Eco57I	CTGAAG	2 cut(s)	751, 1017
Eco81I	CCTNAGG	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRII	CCWGG	1 cut(s)	693
EcoT14I	CCWWGG	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	537
FblI	GTMKAC	1 cut(s)	990
Fnu4HI	GCNGC	3 cut(s)	130, 390, 789
FokI	GGATG	3 cut(s)	309, 834, 851
Fsp4HI	GCNGC	3 cut(s)	130, 390, 789
FspBI	CTAG	2 cut(s)	1008, 1045
GluI	GCNGC	3 cut(s)	130, 390, 789
HaeIII	GGCC	3 cut(s)	497, 613, 833
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HindIII	AAGCTT	2 cut(s)	512, 665
HpaI	GTTAAC	1 cut(s)	91
HphI	GGTGA	5 cut(s)	214, 271, 332, 709, 727
Hpy166II	GTNNAC	4 cut(s)	91, 292, 487, 991
Hpy188I	TCNGA	2 cut(s)	162, 838
Hpy188III	TCNNGA	4 cut(s)	62, 215, 308, 449
Hpy8I	GTNNAC	4 cut(s)	91, 292, 487, 991
HpyAV	CCTTC	5 cut(s)	374, 599, 649, 810, 870
HpyCH4III	ACNGT	4 cut(s)	35, 95, 484, 958
HpyCH4IV	ACGT	2 cut(s)	87, 774
HpyCH4V	TGCA	6 cut(s)	193, 277, 284, 392, 788, 941
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 704
HpyF3I	CTNAG	3 cut(s)	351, 404, 861
HpySE526I	ACGT	2 cut(s)	87, 774
KspAI	GTTAAC	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	55, 157, 445, 879
Lsp1109I	GCAGC	3 cut(s)	141, 376, 800
LweI	GCATC	3 cut(s)	264, 523, 994
MaeI	CTAG	2 cut(s)	1008, 1045
MaeII	ACGT	2 cut(s)	87, 774
MaeIII	GTNAC	3 cut(s)	95, 437, 688
MalI	GATC	4 cut(s)	57, 159, 447, 881
MboI	GATC	4 cut(s)	55, 157, 445, 879
MboII	GAAGA	8 cut(s)	122, 152, 283, 724, 757, 954, 1010, 1013
MhlI	GDGCHC	1 cut(s)	925
MluCI	AATT	6 cut(s)	50, 413, 545, 566, 651, 891
MnlI	CCTC	8 cut(s)	365, 445, 602, 721, 748, 844, 877, 946
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	7 cut(s)	90, 102, 180, 317, 516, 669, 905
MslI	CAYNNNNRTG	4 cut(s)	578, 686, 820, 1023
MspA1I	CMGCKG	2 cut(s)	132, 389
MspR9I	CCNGG	1 cut(s)	695
Mva1269I	GAATGC	2 cut(s)	317, 862
MvaI	CCWGG	1 cut(s)	695
MwoI	GCNNNNNNNGC	2 cut(s)	398, 704
NdeII	GATC	4 cut(s)	55, 157, 445, 879
NmuCI	GTSAC	2 cut(s)	437, 688
PagI	TCATGA	2 cut(s)	61, 307
PceI	AGGCCT	1 cut(s)	497
PctI	GAATGC	2 cut(s)	317, 862
PdmI	GAANNNNTTC	1 cut(s)	359
PkrI	GCNGC	3 cut(s)	131, 391, 790
Psp1406I	AACGTT	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	693
PspPI	GGNCC	2 cut(s)	611, 701
PvuII	CAGCTG	2 cut(s)	132, 389
RsaI	GTAC	3 cut(s)	72, 137, 773
RsaNI	GTAC	3 cut(s)	71, 136, 772
RseI	CAYNNNNRTG	4 cut(s)	578, 686, 820, 1023
SaqAI	TTAA	7 cut(s)	90, 102, 180, 317, 516, 669, 905
SatI	GCNGC	3 cut(s)	130, 390, 789
Sau3AI	GATC	4 cut(s)	55, 157, 445, 879
Sau96I	GGNCC	2 cut(s)	611, 701
ScaI	AGTACT	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	695
SduI	GDGCHC	1 cut(s)	925
SfaNI	GCATC	3 cut(s)	264, 523, 994
SinI	GGWCC	1 cut(s)	701
SmiMI	CAYNNNNRTG	4 cut(s)	578, 686, 820, 1023
Sse9I	AATT	6 cut(s)	50, 413, 545, 566, 651, 891
SseBI	AGGCCT	1 cut(s)	497
SsiI	CCGC	1 cut(s)	1039
SspMI	CTAG	2 cut(s)	1008, 1045
StuI	AGGCCT	1 cut(s)	497
StyD4I	CCNGG	1 cut(s)	693
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	4 cut(s)	35, 95, 484, 958
TaiI	ACGT	2 cut(s)	90, 777
TaqI	TCGA	2 cut(s)	570, 882
TasI	AATT	6 cut(s)	50, 413, 545, 566, 651, 891
TatI	WGTACW	1 cut(s)	70
Tru1I	TTAA	7 cut(s)	90, 102, 180, 317, 516, 669, 905
Tru9I	TTAA	7 cut(s)	90, 102, 180, 317, 516, 669, 905
TscAI	CASTG	2 cut(s)	489, 1000
TseFI	GTSAC	2 cut(s)	437, 688
TseI	GCWGC	3 cut(s)	129, 389, 788
Tsp45I	GTSAC	2 cut(s)	437, 688
TspDTI	ATGAA	9 cut(s)	123, 324, 352, 855, 869, 919, 954, 962, 1007
TspRI	CASTG	2 cut(s)	489, 1000
VpaK11BI	GGWCC	1 cut(s)	701
XapI	RAATTY	3 cut(s)	50, 566, 651
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	990
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	2 cut(s)	1008, 1045
ZrmI	AGTACT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.