Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004321

Physical Location & Seq

Genomic Coordinates Forward (+)

26152216 .. 26154678

Gene Structure 2463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAGAACCAGAGGAGGGGTTTGCTATCCTAGAGTAGTAGAAGATGAGAGGAAGATGAAGAGAGTGACCAAGAAGAGGAAGGTGTGTCTGGCCACCGGAAAAGGAATGGTTTGCCGGAAAAGGACTAAGATGGTTCCTGTTGGGCCTGATATGTTCGACGATTTGCCGGACGACCTTGTGCTCTGTATTCTCTCCAAACTCAGCTCCACCGCCAGCTGCCCTTCCGATTTCATCAACGTTTTGATAACATGTAAGAGACTGAATGGATTGGGTCTGCAATCGCAAGTTTTGGCCAAAGCTTCTCCGAAGACGTTTCCGGTGAAGCCCCAGAACTGGTCGGAGTCGGCTCACCGGTATCTCAAGATTTTGGCCGACGCCGGCAACGTGGAGGCTTGCTATACTCTCGGCATGATTCGCTTCTACTGCTTACAAAGCCGGGGCAGCGGCGCGTCCCTCATGGCCAAGGCCGCGATTGGAGGCTACGCGCCGGCGCTTTACTCTCTGGCTGTGATTCAGTTCAATGGGAGCGGGGGCTCCAAGAACGACAAGGACCTCCGTGCCGGAGTTGCTCTCTGCGCGCGTGCGGCCTTTCTCGGCCACATCGACGCGCTCCGGGAGCTCGGGCACTGCCTCCAAGACGGCTACGGCGTCCGACAGAACATAACGGAGGGGAGACGGTTCCTGGTGCAGGCCAACGCGCGTGAACTCGCGTCGGTTCTGGCATCAGCCGCTGCTTCCGGAATCCCCATGCGGCAGCTGCTGACGTGGACGCCGCTCCCGCATCCACATCCGCACCCTCATCCTCAGTTGCGTCATCTGACCGGGTCGGGTTGCCCGTTGCTCAGCGACTTCGGGTGCAACGTGCCCGCTCCGGAGGTCCACCCGGCGAACCGGTTCTTAGGTGACTGGTTCGCGGGCCGGGCCGACGGGCTGCCCGGGCCGGGTCTGAGGCTCTGCTCGCACGTGGGATGTGGGAGGCCCGAGACAAGGAAACACGAGTTTCGTCGGTGTTCGGTTTGTGGGGCAGTGAACTACTGCTCACGCGCCTGCCAGGCACTTGACTGGAAGCTGCGCCACAAGGCCGAGTGCGCTGCCGTGGAGAGGTGGGTAGATGAGGACGGAGAAGGAGCGGAGGGTGACGGAGCCGTTAACGAGGGCGATGACGTCATGGAAGAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like zf-MYND

Protein Analysis

394

Amino Acids

42.62

Weight (kDa)

8.93

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_27	PF23310	105 - 181	5.6e-08	Plant tetratrico peptide repeats
zf-MYND	PF01753	324 - 363	3.6e-08	MYND finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67340
fragaria_vesca	FvH4_4g23760 FvH4_5g08330
malus_domestica	MD06G1141800.v1.1 MD13G1119000.v1.1 MD14G1157000.v1.1 MD16G1119400.v1.1
prunus_persica	Prupe.1G225800_v2.0.a1 Prupe.5G151000_v2.0.a1
pyrus_communis	pycom13g10380 pycom14g13050 pycom16g10210
rosa_chinensis	RchiOBHm_Chr4g0430251 RchiOBHm_Chr7g0190191
rosa_laevigata	RLG00000004555 RLG00000006990
rosa_multiflora	Rmu_co8361279.1_g000001 Rmu_sc0001089.1_g000023 Rmu_sc0004886.1_g000017
rosa_roxburghii	Rroxscaffold_3G00264800 Rroxscaffold_5G00372050
rosa_rugosa	Rorug04G0241800 Rorug06G0502800
rosa_samantha	Rh4AG298600 Rh4BG305100 Rh4CG320500 Rh4DG302400 Rh7AG108100 Rh7CG113100 Rh7DG111500
rosa_wichuraiana	Rw4G025880 Rw7G009370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1167
AccBSI	CCGCTC	4 cut(s)	528, 775, 869, 1130
AccIII	TCCGGA	2 cut(s)	737, 871
AclI	AACGTT	1 cut(s)	237
AcoI	YGGCCR	5 cut(s)	90, 291, 369, 459, 595
AcvI	CACGTG	1 cut(s)	964
AcyI	GRCGYC	4 cut(s)	375, 648, 770, 1164
AfiI	CCNNNNNNNGG	7 cut(s)	15, 75, 333, 688, 941, 987, 1101
AflIII	ACRYGT	1 cut(s)	248
AgeI	ACCGGT	2 cut(s)	351, 891
AgsI	TTSAA	1 cut(s)	520
AjiI	CACGTC	1 cut(s)	765
AjnI	CCWGG	2 cut(s)	681, 1050
AluBI	AGCT	6 cut(s)	204, 216, 299, 619, 757, 1069
AluI	AGCT	6 cut(s)	204, 216, 299, 619, 757, 1069
Alw21I	GWGCWC	2 cut(s)	183, 621
Alw26I	GTCTC	3 cut(s)	250, 667, 977
AlwNI	CAGNNNCTG	2 cut(s)	731, 760
Ama87I	CYCGRG	3 cut(s)	620, 935, 980
Aor13HI	TCCGGA	2 cut(s)	737, 871
ApeKI	GCWGC	8 cut(s)	216, 441, 731, 754, 757, 931, 1069, 1091
AsiGI	ACCGGT	2 cut(s)	351, 891
Asp700I	GAANNNNTTC	1 cut(s)	893
AspS9I	GGNCC	7 cut(s)	143, 550, 877, 916, 921, 938, 978
AsuC2I	CCSGG	8 cut(s)	437, 614, 823, 884, 920, 936, 937, 942
AsuHPI	GGTGA	4 cut(s)	331, 341, 914, 1148
AvaI	CYCGRG	3 cut(s)	620, 935, 980
AvaII	GGWCC	2 cut(s)	550, 877
BaeGI	GKGCMC	2 cut(s)	627, 867
BalI	TGGCCA	3 cut(s)	92, 293, 461
BanII	GRGCYC	2 cut(s)	536, 621
BauI	CACGAG	1 cut(s)	995
BbrPI	CACGTG	1 cut(s)	964
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	2 cut(s)	183, 621
BbvI	GCAGC	8 cut(s)	203, 453, 718, 744, 766, 918, 1056, 1078
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	4 cut(s)	655, 661, 1079, 1130
BcgI	CGANNNNNNTGC	2 cut(s)	1073, 1107
BciT130I	CCWGG	2 cut(s)	683, 1052
BcnI	CCSGG	8 cut(s)	437, 614, 823, 884, 920, 936, 937, 942
BcoDI	GTCTC	3 cut(s)	250, 667, 977
BfaI	CTAG	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	494
BglI	GCCNNNNNGGC	1 cut(s)	1052
BlpI	GCTNAGC	1 cut(s)	842
Bme18I	GGWCC	2 cut(s)	550, 877
BmeT110I	CYCGRG	3 cut(s)	620, 935, 980
BmgBI	CACGTC	1 cut(s)	765
BmgT120I	GGNCC	7 cut(s)	143, 550, 877, 916, 921, 938, 978
BmiI	GGNNCC	4 cut(s)	135, 535, 680, 1144
BmsI	GCATC	2 cut(s)	731, 790
BpiI	GAAGAC	1 cut(s)	314
BplI	GAGNNNNNCTC	2 cut(s)	555, 587
Bpu1102I	GCTNAGC	1 cut(s)	842
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	8 cut(s)	437, 614, 823, 884, 920, 936, 937, 942
BsaAI	YACGTR	1 cut(s)	964
BsaHI	GRCGYC	4 cut(s)	375, 648, 770, 1164
BsaJI	CCNNGG	4 cut(s)	436, 462, 935, 1095
BsaWI	WCCGGW	6 cut(s)	95, 316, 351, 737, 871, 891
Bsc4I	CCNNNNNNNGG	7 cut(s)	15, 75, 333, 688, 941, 987, 1101
Bse118I	RCCGGY	4 cut(s)	351, 377, 487, 891
Bse1I	ACTGG	3 cut(s)	338, 911, 1067
BseAI	TCCGGA	2 cut(s)	737, 871
BseBI	CCWGG	2 cut(s)	683, 1052
BseDI	CCNNGG	4 cut(s)	436, 462, 935, 1095
BseGI	GGATG	4 cut(s)	781, 787, 799, 974
BseLI	CCNNNNNNNGG	7 cut(s)	15, 75, 333, 688, 941, 987, 1101
BseMII	CTCAG	4 cut(s)	214, 818, 856, 938
BseNI	ACTGG	3 cut(s)	338, 911, 1067
BsePI	GCGCGC	1 cut(s)	576
BseRI	GAGGAG	1 cut(s)	27
BseSI	GKGCMC	2 cut(s)	627, 867
BseXI	GCAGC	8 cut(s)	203, 453, 718, 744, 766, 918, 1056, 1078
BsgI	GTGCAG	1 cut(s)	707
BshTI	ACCGGT	2 cut(s)	351, 891
BsiHKAI	GWGCWC	2 cut(s)	183, 621
BsiHKCI	CYCGRG	3 cut(s)	620, 935, 980
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	7 cut(s)	15, 75, 333, 688, 941, 987, 1101
BsmAI	GTCTC	3 cut(s)	250, 667, 977
BsmBI	CGTCTC	1 cut(s)	667
BsmFI	GGGAC	1 cut(s)	436
BsoBI	CYCGRG	3 cut(s)	620, 935, 980
Bsp1286I	GDGCHC	5 cut(s)	183, 536, 621, 627, 867
Bsp13I	TCCGGA	2 cut(s)	737, 871
Bsp1720I	GCTNAGC	1 cut(s)	842
BspCNI	CTCAG	4 cut(s)	213, 817, 855, 939
BspEI	TCCGGA	2 cut(s)	737, 871
BspLI	GGNNCC	4 cut(s)	135, 535, 680, 1144
BsrBI	CCGCTC	4 cut(s)	528, 775, 869, 1130
BsrFI	RCCGGY	4 cut(s)	351, 377, 487, 891
BsrI	ACTGG	3 cut(s)	338, 911, 1067
BssAI	RCCGGY	4 cut(s)	351, 377, 487, 891
BssECI	CCNNGG	4 cut(s)	436, 462, 935, 1095
BssHII	GCGCGC	1 cut(s)	576
BssNI	GRCGYC	4 cut(s)	375, 648, 770, 1164
BssSI	CACGAG	1 cut(s)	995
BssT1I	CCWWGG	1 cut(s)	462
Bst2BI	CACGAG	1 cut(s)	995
Bst2UI	CCWGG	2 cut(s)	683, 1052
Bst4CI	ACNGT	1 cut(s)	678
Bst6I	CTCTTC	3 cut(s)	53, 68, 1167
BstACI	GRCGYC	4 cut(s)	375, 648, 770, 1164
BstBAI	YACGTR	1 cut(s)	964
BstDEI	CTNAG	6 cut(s)	126, 200, 804, 842, 898, 947
BstDSI	CCRYGG	1 cut(s)	1095
BstENI	CCTNNNNNAGG	1 cut(s)	686
BstF5I	GGATG	4 cut(s)	781, 787, 799, 974
BstH2I	RGCGCY	1 cut(s)	494
BstMAI	GTCTC	3 cut(s)	250, 667, 977
BstNI	CCWGG	2 cut(s)	683, 1052
BstNSI	RCATGY	1 cut(s)	252
BstSLI	GKGCMC	2 cut(s)	627, 867
BstV1I	GCAGC	8 cut(s)	203, 453, 718, 744, 766, 918, 1056, 1078
BstV2I	GAAGAC	1 cut(s)	314
BtgI	CCRYGG	1 cut(s)	1095
BtgZI	GCGATG	1 cut(s)	1173
BtrI	CACGTC	1 cut(s)	765
BtsCI	GGATG	4 cut(s)	781, 787, 799, 974
BtsI	GCAGTG	2 cut(s)	625, 1032
BtsIMutI	CAGTG	2 cut(s)	625, 1032
CaiI	CAGNNNCTG	2 cut(s)	731, 760
Cfr10I	RCCGGY	4 cut(s)	351, 377, 487, 891
Cfr13I	GGNCC	7 cut(s)	143, 550, 877, 916, 921, 938, 978
Cfr9I	CCCGGG	1 cut(s)	935
CseI	GACGC	7 cut(s)	383, 438, 614, 637, 699, 778, 800
CspAI	ACCGGT	2 cut(s)	351, 891
CviAII	CATG	5 cut(s)	249, 409, 457, 748, 1168
DdeI	CTNAG	6 cut(s)	126, 200, 804, 842, 898, 947
EaeI	YGGCCR	5 cut(s)	90, 291, 369, 459, 595
Eam1104I	CTCTTC	3 cut(s)	53, 68, 1167
EarI	CTCTTC	3 cut(s)	53, 68, 1167
Ecl136II	GAGCTC	1 cut(s)	619
Eco130I	CCWWGG	1 cut(s)	462
Eco24I	GRGCYC	2 cut(s)	536, 621
Eco47I	GGWCC	2 cut(s)	550, 877
Eco53kI	GAGCTC	1 cut(s)	619
Eco72I	CACGTG	1 cut(s)	964
Eco88I	CYCGRG	3 cut(s)	620, 935, 980
EcoICRI	GAGCTC	1 cut(s)	619
EcoNI	CCTNNNNNAGG	1 cut(s)	686
EcoO109I	RGGNCCY	1 cut(s)	550
EcoRII	CCWGG	2 cut(s)	681, 1050
EcoT14I	CCWWGG	1 cut(s)	462
EcoT38I	GRGCYC	2 cut(s)	536, 621
ErhI	CCWWGG	1 cut(s)	462
Esp3I	CGTCTC	1 cut(s)	667
FaeI	CATG	5 cut(s)	252, 412, 460, 751, 1171
FaiI	YATR	8 cut(s)	152, 250, 399, 410, 458, 662, 749, 1169
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	5 cut(s)	248, 408, 456, 747, 1167
FauI	CCCGC	4 cut(s)	521, 786, 874, 907
FokI	GGATG	4 cut(s)	768, 774, 786, 981
FriOI	GRGCYC	2 cut(s)	536, 621
FspBI	CTAG	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	494
HgaI	GACGC	7 cut(s)	383, 438, 614, 637, 699, 778, 800
Hin1I	GRCGYC	4 cut(s)	375, 648, 770, 1164
Hin1II	CATG	5 cut(s)	252, 412, 460, 751, 1171
HincII	GTYRAC	1 cut(s)	1150
HindII	GTYRAC	1 cut(s)	1150
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	4 cut(s)	341, 412, 511, 741
HpaI	GTTAAC	1 cut(s)	1150
HphI	GGTGA	4 cut(s)	331, 341, 914, 1148
Hpy166II	GTNNAC	5 cut(s)	704, 768, 880, 1030, 1150
Hpy188I	TCNGA	6 cut(s)	226, 306, 340, 653, 819, 948
Hpy188III	TCNNGA	3 cut(s)	361, 738, 872
Hpy8I	GTNNAC	5 cut(s)	704, 768, 880, 1030, 1150
Hpy99I	CGWCG	6 cut(s)	161, 377, 608, 715, 929, 1008
HpyAV	CCTTC	3 cut(s)	73, 231, 1118
HpyCH4III	ACNGT	1 cut(s)	678
HpyCH4IV	ACGT	7 cut(s)	237, 311, 384, 764, 861, 963, 1164
HpyCH4V	TGCA	3 cut(s)	277, 688, 858
HpyF3I	CTNAG	6 cut(s)	126, 200, 804, 842, 898, 947
HpySE526I	ACGT	7 cut(s)	237, 311, 384, 764, 861, 963, 1164
Hsp92I	GRCGYC	4 cut(s)	375, 648, 770, 1164
Hsp92II	CATG	5 cut(s)	252, 412, 460, 751, 1171
Kpn2I	TCCGGA	2 cut(s)	737, 871
KroI	GCCGGC	2 cut(s)	377, 487
KroNI	GCCGGC	2 cut(s)	379, 489
KspAI	GTTAAC	1 cut(s)	1150
LmnI	GCTCC	9 cut(s)	209, 525, 539, 615, 616, 780, 874, 1127, 1142
Lsp1109I	GCAGC	8 cut(s)	203, 453, 718, 744, 766, 918, 1056, 1078
LweI	GCATC	2 cut(s)	731, 790
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	7 cut(s)	237, 311, 384, 764, 861, 963, 1164
MaeIII	GTNAC	3 cut(s)	64, 902, 1136
MbiI	CCGCTC	4 cut(s)	528, 775, 869, 1130
MboII	GAAGA	5 cut(s)	53, 64, 70, 85, 319
MhlI	GDGCHC	5 cut(s)	183, 536, 621, 627, 867
MlsI	TGGCCA	3 cut(s)	92, 293, 461
MluNI	TGGCCA	3 cut(s)	92, 293, 461
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	2 cut(s)	318, 676
Mox20I	TGGCCA	3 cut(s)	92, 293, 461
MreI	CGCCGGCG	1 cut(s)	487
MroI	TCCGGA	2 cut(s)	737, 871
MroNI	GCCGGC	2 cut(s)	377, 487
MroXI	GAANNNNTTC	1 cut(s)	893
MscI	TGGCCA	3 cut(s)	92, 293, 461
MseI	TTAA	2 cut(s)	1149, 1180
Msp20I	TGGCCA	3 cut(s)	92, 293, 461
MspA1I	CMGCKG	4 cut(s)	216, 444, 731, 757
MvaI	CCWGG	2 cut(s)	683, 1052
NaeI	GCCGGC	2 cut(s)	379, 489
NciI	CCSGG	8 cut(s)	437, 614, 823, 884, 920, 936, 937, 942
NgoMIV	GCCGGC	2 cut(s)	377, 487
NlaIII	CATG	5 cut(s)	252, 412, 460, 751, 1171
NlaIV	GGNNCC	4 cut(s)	135, 535, 680, 1144
NmeAIII	GCCGAG	3 cut(s)	384, 573, 1108
NmuCI	GTSAC	3 cut(s)	64, 902, 1136
NspI	RCATGY	1 cut(s)	252
PauI	GCGCGC	1 cut(s)	576
PciI	ACATGT	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	5 cut(s)	381, 600, 645, 833, 858
PdiI	GCCGGC	2 cut(s)	379, 489
PdmI	GAANNNNTTC	1 cut(s)	893
PfeI	GAWTC	3 cut(s)	412, 511, 741
PflFI	GACNNNGTC	1 cut(s)	823
PfoI	TCCNGGA	1 cut(s)	612
PinAI	ACCGGT	2 cut(s)	351, 891
PleI	GAGTC	1 cut(s)	349
PmaCI	CACGTG	1 cut(s)	964
PmlI	CACGTG	1 cut(s)	964
PpsI	GAGTC	1 cut(s)	349
Ppu21I	YACGTR	1 cut(s)	964
PpuMI	RGGWCCY	1 cut(s)	550
PscI	ACATGT	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	621
Psp1406I	AACGTT	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	550
Psp6I	CCWGG	2 cut(s)	681, 1050
PspCI	CACGTG	1 cut(s)	964
PspGI	CCWGG	2 cut(s)	681, 1050
PspN4I	GGNNCC	4 cut(s)	135, 535, 680, 1144
PspPI	GGNCC	7 cut(s)	143, 550, 877, 916, 921, 938, 978
PspPPI	RGGWCCY	1 cut(s)	550
PstNI	CAGNNNCTG	2 cut(s)	731, 760
PsyI	GACNNNGTC	1 cut(s)	823
PteI	GCGCGC	1 cut(s)	576
PvuII	CAGCTG	2 cut(s)	216, 757
SacI	GAGCTC	1 cut(s)	621
SaqAI	TTAA	2 cut(s)	1149, 1180
Sau96I	GGNCC	7 cut(s)	143, 550, 877, 916, 921, 938, 978
SchI	GAGTC	1 cut(s)	350
SduI	GDGCHC	5 cut(s)	183, 536, 621, 627, 867
SfaNI	GCATC	2 cut(s)	731, 790
SgrAI	CRCCGGYG	1 cut(s)	487
SinI	GGWCC	2 cut(s)	550, 877
SmaI	CCCGGG	1 cut(s)	937
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SrfI	GCCCGGGC	1 cut(s)	937
SspMI	CTAG	1 cut(s)	30
SstI	GAGCTC	1 cut(s)	621
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	1 cut(s)	678
TaiI	ACGT	7 cut(s)	240, 314, 387, 767, 864, 966, 1167
TaqI	TCGA	2 cut(s)	156, 603
TauI	GCSGC	6 cut(s)	447, 470, 587, 731, 754, 775
TfiI	GAWTC	3 cut(s)	412, 511, 741
Tru1I	TTAA	2 cut(s)	1149, 1180
Tru9I	TTAA	2 cut(s)	1149, 1180
TscAI	CASTG	2 cut(s)	632, 1032
TseFI	GTSAC	3 cut(s)	64, 902, 1136
TseI	GCWGC	8 cut(s)	216, 441, 731, 754, 757, 931, 1069, 1091
Tsp45I	GTSAC	3 cut(s)	64, 902, 1136
TspDTI	ATGAA	2 cut(s)	71, 220
TspGWI	ACGGA	4 cut(s)	545, 680, 1134, 1155
TspMI	CCCGGG	1 cut(s)	935
TspRI	CASTG	2 cut(s)	632, 1032
Tth111I	GACNNNGTC	1 cut(s)	823
VpaK11BI	GGWCC	2 cut(s)	550, 877
XagI	CCTNNNNNAGG	1 cut(s)	686
XceI	RCATGY	1 cut(s)	252
XmaI	CCCGGG	1 cut(s)	935
XmnI	GAANNNNTTC	1 cut(s)	893
XspI	CTAG	1 cut(s)	30
ZraI	GACGTC	1 cut(s)	1165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.