Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8361279.1

Orthogroup ID

OG0004321

Physical Location & Seq

Genomic Coordinates Reverse (-)

5 .. 984

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8361279.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ctgtctaaagcttccccgaaaacgtttccggtgaagccccataactggtccgagtcggctcaccgattcctcaagatgttggccgacgccggcaacgtcgaggcttgctatactctcggcatgattcgcttttactgcttgcaaagccgaggcagcggcgcgtctctgatggcaaaggccgcgattggcggttacgcgccggcgctttactctctggctgtgattcagttcaatgggagcggcggctccaagaacgacaaggacctccgtgccggagttgctctgtgcgcgcgtgctgcctttctcggccacatcgacgctctccgggagctggggcactgcctccaagacggctacggcgtccggcagaacatcacggagggaagacggttcctggtccaggccaacgcgcgtgaactcgcgttggttctggcatctgctgcggcttctggaatccccatgcggcagttgctgacgtggacgcctctcccgcatcctcatccccaccctcatcctcagttgcgtcacctgaccgggtcgggttgcccgctgctcagcgacttcgggtgcaacgtgcccgctccggaggtccacccggcgaaccggttcttgggagattggttcgcgggccgggccgacggtctgcccggaccgggtctgaggctgtgctcgcacgtggggtgtgggaggcccgagactaggagacacgagttccgtcggtgttcggtgtgcggggcagtgaactactgctcacgcgcctgccaggcgcttgactggaaactgcggcacaaggccgagtgcgccgccgtggagaggtgggtggatgaggacggagaaggcgcggagggtgagggagccgttaacgagggcgatgacgtcatggaagagagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like zf-MYND

Protein Analysis

297

Amino Acids

32.03

Weight (kDa)

8.01

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67340
fragaria_vesca	FvH4_4g23760 FvH4_5g08330
malus_domestica	MD06G1141800.v1.1 MD13G1119000.v1.1 MD14G1157000.v1.1 MD16G1119400.v1.1
prunus_persica	Prupe.1G225800_v2.0.a1 Prupe.5G151000_v2.0.a1
pyrus_communis	pycom13g10380 pycom14g13050 pycom16g10210
rosa_chinensis	RchiOBHm_Chr4g0430251 RchiOBHm_Chr7g0190191
rosa_laevigata	RLG00000004555 RLG00000006990
rosa_multiflora	Rmu_co8361279.1_g000001 Rmu_sc0001089.1_g000023 Rmu_sc0004886.1_g000017
rosa_roxburghii	Rroxscaffold_3G00264800 Rroxscaffold_5G00372050
rosa_rugosa	Rorug04G0241800 Rorug06G0502800
rosa_samantha	Rh4AG298600 Rh4BG305100 Rh4CG320500 Rh4DG302400 Rh7AG108100 Rh7CG113100 Rh7DG111500
rosa_wichuraiana	Rw4G025880 Rw7G009370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	879
AccBSI	CCGCTC	2 cut(s)	240, 581
AccIII	TCCGGA	1 cut(s)	583
AclI	AACGTT	1 cut(s)	23
AcoI	YGGCCR	2 cut(s)	81, 307
AcvI	CACGTG	1 cut(s)	676
AcyI	GRCGYC	4 cut(s)	87, 360, 482, 876
AfiI	CCNNNNNNNGG	7 cut(s)	45, 331, 400, 610, 653, 699, 813
AgeI	ACCGGT	1 cut(s)	603
AgsI	TTSAA	1 cut(s)	232
AjiI	CACGTC	1 cut(s)	477
AjnI	CCWGG	3 cut(s)	393, 399, 762
AjuI	GAANNNNNNNTTGG	2 cut(s)	593, 625
AluBI	AGCT	2 cut(s)	11, 331
AluI	AGCT	2 cut(s)	11, 331
Alw21I	GWGCWC	1 cut(s)	671
Alw26I	GTCTC	3 cut(s)	168, 689, 697
AlwNI	CAGNNNCTG	1 cut(s)	472
Ama87I	CYCGRG	1 cut(s)	692
Aor13HI	TCCGGA	1 cut(s)	583
AoxI	GGCC	8 cut(s)	81, 177, 307, 402, 628, 633, 689, 792
ApeKI	GCWGC	4 cut(s)	153, 296, 440, 550
AsiGI	ACCGGT	1 cut(s)	603
Asp700I	GAANNNNTTC	1 cut(s)	605
AspS9I	GGNCC	8 cut(s)	48, 262, 397, 589, 628, 633, 650, 690
AsuC2I	CCSGG	6 cut(s)	326, 535, 596, 632, 648, 654
AsuHPI	GGTGA	4 cut(s)	43, 53, 518, 860
AvaI	CYCGRG	1 cut(s)	692
AvaII	GGWCC	5 cut(s)	48, 262, 397, 589, 650
BaeGI	GKGCMC	2 cut(s)	339, 579
BauI	CACGAG	1 cut(s)	707
BbrPI	CACGTG	1 cut(s)	676
BbsI	GAAGAC	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	671
BbvI	GCAGC	4 cut(s)	165, 283, 427, 537
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	4 cut(s)	367, 373, 791, 842
BciT130I	CCWGG	3 cut(s)	395, 401, 764
BcnI	CCSGG	6 cut(s)	326, 535, 596, 632, 648, 654
BcoDI	GTCTC	3 cut(s)	168, 689, 697
BfaI	CTAG	1 cut(s)	699
BfoI	RGCGCY	2 cut(s)	206, 770
BglI	GCCNNNNNGGC	1 cut(s)	764
BlpI	GCTNAGC	1 cut(s)	554
Bme1390I	CCNGG	9 cut(s)	326, 395, 401, 535, 596, 632, 648, 654, 764
Bme18I	GGWCC	5 cut(s)	48, 262, 397, 589, 650
BmeT110I	CYCGRG	1 cut(s)	692
BmgBI	CACGTC	1 cut(s)	477
BmgT120I	GGNCC	8 cut(s)	48, 262, 397, 589, 628, 633, 650, 690
BmiI	GGNNCC	3 cut(s)	247, 392, 856
BmrFI	CCNGG	9 cut(s)	326, 395, 401, 535, 596, 632, 648, 654, 764
BmsI	GCATC	2 cut(s)	443, 502
BpiI	GAAGAC	1 cut(s)	391
Bpu1102I	GCTNAGC	1 cut(s)	554
BpuEI	CTTGAG	1 cut(s)	56
BpuMI	CCSGG	6 cut(s)	326, 535, 596, 632, 648, 654
BsaAI	YACGTR	1 cut(s)	676
BsaHI	GRCGYC	4 cut(s)	87, 360, 482, 876
BsaJI	CCNNGG	2 cut(s)	148, 807
BsaWI	WCCGGW	3 cut(s)	28, 583, 603
Bsc4I	CCNNNNNNNGG	7 cut(s)	45, 331, 400, 610, 653, 699, 813
Bse118I	RCCGGY	3 cut(s)	89, 199, 603
Bse1I	ACTGG	2 cut(s)	50, 779
BseAI	TCCGGA	1 cut(s)	583
BseBI	CCWGG	3 cut(s)	395, 401, 764
BseDI	CCNNGG	2 cut(s)	148, 807
BseGI	GGATG	4 cut(s)	493, 499, 511, 829
BseLI	CCNNNNNNNGG	7 cut(s)	45, 331, 400, 610, 653, 699, 813
BseMII	CTCAG	3 cut(s)	530, 568, 650
BseNI	ACTGG	2 cut(s)	50, 779
BsePI	GCGCGC	1 cut(s)	288
BseSI	GKGCMC	2 cut(s)	339, 579
BseXI	GCAGC	4 cut(s)	165, 283, 427, 537
BseYI	CCCAGC	1 cut(s)	331
BshFI	GGCC	8 cut(s)	83, 179, 309, 404, 630, 635, 691, 794
BshTI	ACCGGT	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	671
BsiHKCI	CYCGRG	1 cut(s)	692
BslI	CCNNNNNNNGG	7 cut(s)	45, 331, 400, 610, 653, 699, 813
BsmAI	GTCTC	3 cut(s)	168, 689, 697
BsmBI	CGTCTC	1 cut(s)	168
BsnI	GGCC	8 cut(s)	83, 179, 309, 404, 630, 635, 691, 794
BsoBI	CYCGRG	1 cut(s)	692
Bsp1286I	GDGCHC	3 cut(s)	339, 579, 671
Bsp13I	TCCGGA	1 cut(s)	583
Bsp1720I	GCTNAGC	1 cut(s)	554
BspANI	GGCC	8 cut(s)	83, 179, 309, 404, 630, 635, 691, 794
BspCNI	CTCAG	3 cut(s)	529, 567, 651
BspEI	TCCGGA	1 cut(s)	583
BspLI	GGNNCC	3 cut(s)	247, 392, 856
BsrBI	CCGCTC	2 cut(s)	240, 581
BsrFI	RCCGGY	3 cut(s)	89, 199, 603
BsrI	ACTGG	2 cut(s)	50, 779
BssAI	RCCGGY	3 cut(s)	89, 199, 603
BssECI	CCNNGG	2 cut(s)	148, 807
BssHII	GCGCGC	1 cut(s)	288
BssNI	GRCGYC	4 cut(s)	87, 360, 482, 876
BssSI	CACGAG	1 cut(s)	707
Bst2BI	CACGAG	1 cut(s)	707
Bst2UI	CCWGG	3 cut(s)	395, 401, 764
Bst4CI	ACNGT	2 cut(s)	390, 641
Bst6I	CTCTTC	1 cut(s)	879
BstACI	GRCGYC	4 cut(s)	87, 360, 482, 876
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstBAI	YACGTR	1 cut(s)	676
BstDEI	CTNAG	3 cut(s)	516, 554, 659
BstDSI	CCRYGG	1 cut(s)	807
BstENI	CCTNNNNNAGG	1 cut(s)	398
BstF5I	GGATG	4 cut(s)	493, 499, 511, 829
BstH2I	RGCGCY	2 cut(s)	206, 770
BstMAI	GTCTC	3 cut(s)	168, 689, 697
BstNI	CCWGG	3 cut(s)	395, 401, 764
BstSCI	CCNGG	9 cut(s)	324, 393, 399, 533, 594, 630, 646, 652, 762
BstSLI	GKGCMC	2 cut(s)	339, 579
BstV1I	GCAGC	4 cut(s)	165, 283, 427, 537
BstV2I	GAAGAC	1 cut(s)	391
BsuRI	GGCC	8 cut(s)	83, 179, 309, 404, 630, 635, 691, 794
BtgI	CCRYGG	1 cut(s)	807
BtgZI	GCGATG	1 cut(s)	885
BtrI	CACGTC	1 cut(s)	477
BtsCI	GGATG	4 cut(s)	493, 499, 511, 829
BtsI	GCAGTG	2 cut(s)	337, 744
BtsIMutI	CAGTG	2 cut(s)	337, 744
CaiI	CAGNNNCTG	1 cut(s)	472
Cfr10I	RCCGGY	3 cut(s)	89, 199, 603
Cfr13I	GGNCC	8 cut(s)	48, 262, 397, 589, 628, 633, 650, 690
CpoI	CGGWCCG	1 cut(s)	650
CseI	GACGC	6 cut(s)	95, 150, 326, 349, 490, 512
CspAI	ACCGGT	1 cut(s)	603
CspI	CGGWCCG	1 cut(s)	650
CviAII	CATG	3 cut(s)	121, 460, 880
DdeI	CTNAG	3 cut(s)	516, 554, 659
EaeI	YGGCCR	2 cut(s)	81, 307
Eam1104I	CTCTTC	1 cut(s)	879
EarI	CTCTTC	1 cut(s)	879
Eco47I	GGWCC	5 cut(s)	48, 262, 397, 589, 650
Eco72I	CACGTG	1 cut(s)	676
Eco88I	CYCGRG	1 cut(s)	692
EcoNI	CCTNNNNNAGG	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	3 cut(s)	393, 399, 762
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	3 cut(s)	124, 463, 883
FaiI	YATR	5 cut(s)	42, 111, 122, 461, 881
FatI	CATG	3 cut(s)	120, 459, 879
FauI	CCCGC	5 cut(s)	498, 555, 586, 619, 725
FokI	GGATG	4 cut(s)	480, 486, 498, 836
FspBI	CTAG	1 cut(s)	699
GsaI	CCCAGC	1 cut(s)	335
HaeII	RGCGCY	2 cut(s)	206, 770
HaeIII	GGCC	8 cut(s)	83, 179, 309, 404, 630, 635, 691, 794
HgaI	GACGC	6 cut(s)	95, 150, 326, 349, 490, 512
Hin1I	GRCGYC	4 cut(s)	87, 360, 482, 876
Hin1II	CATG	3 cut(s)	124, 463, 883
HincII	GTYRAC	1 cut(s)	862
HindII	GTYRAC	1 cut(s)	862
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	5 cut(s)	53, 66, 124, 223, 453
HpaI	GTTAAC	1 cut(s)	862
HphI	GGTGA	4 cut(s)	43, 53, 518, 860
Hpy166II	GTNNAC	5 cut(s)	416, 480, 592, 742, 862
Hpy188I	TCNGA	3 cut(s)	52, 168, 660
Hpy188III	TCNNGA	3 cut(s)	73, 450, 584
Hpy8I	GTNNAC	5 cut(s)	416, 480, 592, 742, 862
Hpy99I	CGWCG	5 cut(s)	89, 101, 320, 641, 720
HpyAV	CCTTC	1 cut(s)	830
HpyCH4III	ACNGT	2 cut(s)	390, 641
HpyCH4IV	ACGT	6 cut(s)	23, 96, 476, 573, 675, 876
HpyCH4V	TGCA	2 cut(s)	142, 570
HpyF3I	CTNAG	3 cut(s)	516, 554, 659
HpySE526I	ACGT	6 cut(s)	23, 96, 476, 573, 675, 876
Hsp92I	GRCGYC	4 cut(s)	87, 360, 482, 876
Hsp92II	CATG	3 cut(s)	124, 463, 883
Kpn2I	TCCGGA	1 cut(s)	583
KroI	GCCGGC	2 cut(s)	89, 199
KroNI	GCCGGC	2 cut(s)	91, 201
KspAI	GTTAAC	1 cut(s)	862
LmnI	GCTCC	5 cut(s)	237, 251, 328, 586, 854
Lsp1109I	GCAGC	4 cut(s)	165, 283, 427, 537
LweI	GCATC	2 cut(s)	443, 502
MaeI	CTAG	1 cut(s)	699
MaeII	ACGT	6 cut(s)	23, 96, 476, 573, 675, 876
MaeIII	GTNAC	2 cut(s)	191, 524
MbiI	CCGCTC	2 cut(s)	240, 581
MboII	GAAGA	1 cut(s)	396
MhlI	GDGCHC	3 cut(s)	339, 579, 671
MlyI	GAGTC	1 cut(s)	62
MreI	CGCCGGCG	1 cut(s)	199
MroI	TCCGGA	1 cut(s)	583
MroNI	GCCGGC	2 cut(s)	89, 199
MroXI	GAANNNNTTC	1 cut(s)	605
MseI	TTAA	2 cut(s)	861, 892
MspA1I	CMGCKG	2 cut(s)	156, 550
MspR9I	CCNGG	9 cut(s)	326, 395, 401, 535, 596, 632, 648, 654, 764
MvaI	CCWGG	3 cut(s)	395, 401, 764
NaeI	GCCGGC	2 cut(s)	91, 201
NciI	CCSGG	6 cut(s)	326, 535, 596, 632, 648, 654
NgoMIV	GCCGGC	2 cut(s)	89, 199
NlaIII	CATG	3 cut(s)	124, 463, 883
NlaIV	GGNNCC	3 cut(s)	247, 392, 856
NmeAIII	GCCGAG	4 cut(s)	96, 173, 285, 820
NmuCI	GTSAC	1 cut(s)	524
PauI	GCGCGC	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	4 cut(s)	93, 312, 357, 570
PdiI	GCCGGC	2 cut(s)	91, 201
PdmI	GAANNNNTTC	1 cut(s)	605
PfeI	GAWTC	4 cut(s)	66, 124, 223, 453
PflFI	GACNNNGTC	2 cut(s)	535, 654
PfoI	TCCNGGA	1 cut(s)	324
PinAI	ACCGGT	1 cut(s)	603
PleI	GAGTC	1 cut(s)	61
PmaCI	CACGTG	1 cut(s)	676
PmlI	CACGTG	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	61
Ppu21I	YACGTR	1 cut(s)	676
PpuMI	RGGWCCY	1 cut(s)	262
Psp1406I	AACGTT	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	262
Psp6I	CCWGG	3 cut(s)	393, 399, 762
PspCI	CACGTG	1 cut(s)	676
PspFI	CCCAGC	1 cut(s)	331
PspGI	CCWGG	3 cut(s)	393, 399, 762
PspN4I	GGNNCC	3 cut(s)	247, 392, 856
PspPI	GGNCC	8 cut(s)	48, 262, 397, 589, 628, 633, 650, 690
PspPPI	RGGWCCY	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	472
PsyI	GACNNNGTC	2 cut(s)	535, 654
PteI	GCGCGC	1 cut(s)	288
Rsr2I	CGGWCCG	1 cut(s)	650
RsrII	CGGWCCG	1 cut(s)	650
SaqAI	TTAA	2 cut(s)	861, 892
Sau96I	GGNCC	8 cut(s)	48, 262, 397, 589, 628, 633, 650, 690
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	9 cut(s)	326, 395, 401, 535, 596, 632, 648, 654, 764
SduI	GDGCHC	3 cut(s)	339, 579, 671
SfaNI	GCATC	2 cut(s)	443, 502
SgrAI	CRCCGGYG	1 cut(s)	199
SinI	GGWCC	5 cut(s)	48, 262, 397, 589, 650
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SspMI	CTAG	1 cut(s)	699
StyD4I	CCNGG	9 cut(s)	324, 393, 399, 533, 594, 630, 646, 652, 762
TaaI	ACNGT	2 cut(s)	390, 641
TaiI	ACGT	6 cut(s)	26, 99, 479, 576, 678, 879
TaqI	TCGA	2 cut(s)	99, 315
TauI	GCSGC	8 cut(s)	159, 182, 243, 246, 446, 466, 787, 806
TfiI	GAWTC	4 cut(s)	66, 124, 223, 453
Tru1I	TTAA	2 cut(s)	861, 892
Tru9I	TTAA	2 cut(s)	861, 892
TscAI	CASTG	2 cut(s)	344, 744
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	4 cut(s)	153, 296, 440, 550
Tsp45I	GTSAC	1 cut(s)	524
TspGWI	ACGGA	4 cut(s)	257, 392, 704, 846
TspRI	CASTG	2 cut(s)	344, 744
Tth111I	GACNNNGTC	2 cut(s)	535, 654
VpaK11BI	GGWCC	5 cut(s)	48, 262, 397, 589, 650
XagI	CCTNNNNNAGG	1 cut(s)	398
XmnI	GAANNNNTTC	1 cut(s)	605
XspI	CTAG	1 cut(s)	699
ZraI	GACGTC	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.