Rroxscaffold_3G00264800

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
58326167 .. 58327521
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00264800.1

Sequence Viewer

Length: 1041 bp
ATGACGAACAGGAAAAGGCTCAGAACCTCTAGAAGAACCGCCAGCACCGCTGCACAATCGGATTTCTTCGATGACTTGCCTGACGATCTCGTCGTCTTCATCCTCTGCAAGCTCAGCTCCTCCGCTTCCTCTCCCTCCGATCTCATCAACGTCCTCATCACATGCAAGAGATTGAACCGGTTCGGGCTTCACTCTCTGGTACTATCGAAAGCCGGTCCAGGAGCTTTTGCTATCAGGGCCAAGAACTGGTCCGACTCGGCTCACCGGTTTCTCAAGCTCTGCGTTAGCGCCGGTAACATCGAAGCTTGCTACACTCTCGGAATGATCCGATTTTATTGCTTACAAAACCGAGGCAGTGGCGCTTCGCTAATGGCCAAGGCCGCCATGCGGTGCCACACGCGTGCGCTTTACTCGCTCGCCGTTATTCAGTTCAACGGCAGCGGCGGCTCCAAGAAAGAGAAGGACCTACGCGCCGGTGTGGCTCTCTGCGCACGCGCCGCCGGGCTCGGCCACATCGACGCGCTCCGCGAGCTCGGGCATTGCCTCCAGGACGGTTACGGTGTCCGCCAGAACGTCTCGGAGGGACGACGCCTCATAGTCCAGGCCAACGCGCAGGAGCTAGCGGCGGTTATAACCTCCGCCACGTGGCGGTCCCACCAGTACCAGCACTTCTACGCGTGCCTGACGGGGTTGGTTAGTTGCCCGCTGCTGAGCGACTTCGGGTGCAACGTTCCCGGGCCGGAGGTCCACCCGGCGAACCGGTTCATGAAGGAGTGGTTCGGGTCGGGTCGGTGGTTGGAGGGCGTTGGGCTGAGGATGTGCTCGCACGTGGGGTGCGGGAGGCCCGAGACGAGGCCACACGAGTTTCGGAGGTGCTCGGTCTGTGGTACGGTCAATTACTGCTCGCGTGGGTGTCAAGCGCTGGATTGGAAGCTGAGGCACAAGGTTCAGTGTAAGCCGATCGAACGGTGGCTAGTGGTTGATGGCGGTGGCGGTGGAGGTGGTGATGGAATTGAGGGTGAGAATGTGGTGGTGGAATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

346

Amino Acids

37.77

Weight (kDa)

9.27

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_27 PF23310 83 - 156 4e-13 Plant tetratrico peptide repeats
zf-MYND PF01753 279 - 318 5.7e-08 MYND finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 632
AasI GACNNNNNNGTC 1 cut(s) 89
Acc16I TGCGCA 1 cut(s) 490
AccB1I GGYRCC 1 cut(s) 390
AccB7I CCANNNNNTGG 1 cut(s) 246
AccII CGCG 8 cut(s) 400, 471, 495, 521, 528, 611, 677, 907
AclI AACGTT 1 cut(s) 729
AclWI GGATC 1 cut(s) 319
AcoI YGGCCR 2 cut(s) 372, 508
AcvI CACGTG 2 cut(s) 645, 829
AcyI GRCGYC 1 cut(s) 589
AfaI GTAC 3 cut(s) 201, 662, 889
AfeI AGCGCT 1 cut(s) 921
AfiI CCNNNNNNNGG 5 cut(s) 246, 387, 645, 648, 852
AflIII ACRYGT 2 cut(s) 398, 675
AgeI ACCGGT 3 cut(s) 177, 264, 759
AgsI TTSAA 2 cut(s) 175, 433
AjnI CCWGG 3 cut(s) 217, 546, 600
AleI CACNNNNGTG 1 cut(s) 399
AluBI AGCT 8 cut(s) 112, 117, 224, 277, 305, 532, 619, 934
AluI AGCT 8 cut(s) 112, 117, 224, 277, 305, 532, 619, 934
Alw21I GWGCWC 3 cut(s) 534, 824, 878
Alw26I GTCTC 2 cut(s) 580, 842
AlwI GGATC 1 cut(s) 319
Ama87I CYCGRG 3 cut(s) 533, 734, 845
Aor51HI AGCGCT 1 cut(s) 921
AoxI GGCC 8 cut(s) 237, 372, 378, 508, 603, 737, 842, 854
ApeKI GCWGC 3 cut(s) 50, 438, 706
AsiGI ACCGGT 3 cut(s) 177, 264, 759
Asp700I GAANNNNTTC 2 cut(s) 179, 761
AspLEI GCGC 9 cut(s) 290, 362, 406, 473, 491, 497, 523, 613, 922
AspS9I GGNCC 8 cut(s) 215, 237, 249, 463, 651, 737, 745, 843
AsuC2I CCSGG 4 cut(s) 502, 735, 736, 752
AsuHPI GGTGA 3 cut(s) 254, 1016, 1031
AsuNHI GCTAGC 1 cut(s) 619
AvaI CYCGRG 3 cut(s) 533, 734, 845
AvaII GGWCC 5 cut(s) 215, 249, 463, 651, 745
BalI TGGCCA 1 cut(s) 374
BanI GGYRCC 1 cut(s) 390
BanII GRGCYC 2 cut(s) 507, 534
BarI GAAGNNNNNNTAC 2 cut(s) 653, 685
BauI CACGAG 1 cut(s) 860
BbrPI CACGTG 2 cut(s) 645, 829
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 3 cut(s) 534, 824, 878
BbvCI CCTCAGC 2 cut(s) 812, 935
BbvI GCAGC 3 cut(s) 37, 450, 693
BccI CCATC 2 cut(s) 977, 1001
BceAI ACGGC 2 cut(s) 404, 451
BcgI CGANNNNNNTGC 2 cut(s) 318, 352
BciT130I CCWGG 3 cut(s) 219, 548, 602
BcnI CCSGG 4 cut(s) 502, 735, 736, 752
BcoDI GTCTC 2 cut(s) 580, 842
BfaI CTAG 3 cut(s) 30, 620, 974
BfoI RGCGCY 3 cut(s) 291, 363, 923
BglI GCCNNNNNGGC 1 cut(s) 479
BisI GCNGC 8 cut(s) 51, 381, 439, 442, 445, 498, 624, 707
BlpI GCTNAGC 2 cut(s) 113, 710
BlsI GCNGC 8 cut(s) 52, 382, 440, 443, 446, 499, 625, 708
Bme1390I CCNGG 7 cut(s) 219, 502, 548, 602, 735, 736, 752
Bme18I GGWCC 5 cut(s) 215, 249, 463, 651, 745
BmeT110I CYCGRG 3 cut(s) 533, 734, 845
BmgT120I GGNCC 8 cut(s) 215, 237, 249, 463, 651, 737, 745, 843
BmiI GGNNCC 3 cut(s) 392, 448, 653
BmrFI CCNGG 7 cut(s) 219, 502, 548, 602, 735, 736, 752
BmtI GCTAGC 1 cut(s) 623
BpiI GAAGAC 1 cut(s) 88
BpmI CTGGAG 1 cut(s) 530
Bpu10I CCTNAGC 2 cut(s) 812, 935
Bpu1102I GCTNAGC 2 cut(s) 113, 710
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 4 cut(s) 502, 735, 736, 752
BsaAI YACGTR 2 cut(s) 645, 829
BsaHI GRCGYC 1 cut(s) 589
BsaJI CCNNGG 3 cut(s) 349, 375, 734
BsaWI WCCGGW 3 cut(s) 177, 264, 759
Bsc4I CCNNNNNNNGG 5 cut(s) 246, 387, 645, 648, 852
Bse118I RCCGGY 6 cut(s) 177, 212, 264, 290, 473, 759
Bse1I ACTGG 2 cut(s) 251, 658
Bse3DI GCAATG 1 cut(s) 538
BseBI CCWGG 3 cut(s) 219, 548, 602
BseDI CCNNGG 3 cut(s) 349, 375, 734
BseGI GGATG 2 cut(s) 99, 822
BseLI CCNNNNNNNGG 5 cut(s) 246, 387, 645, 648, 852
BseMI GCAATG 1 cut(s) 538
BseMII CTCAG 5 cut(s) 34, 127, 701, 803, 926
BseNI ACTGG 2 cut(s) 251, 658
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 3 cut(s) 37, 450, 693
BsgI GTGCAG 1 cut(s) 36
Bsh1236I CGCG 8 cut(s) 400, 471, 495, 521, 528, 611, 677, 907
Bsh1285I CGRYCG 1 cut(s) 963
BshFI GGCC 8 cut(s) 239, 374, 380, 510, 605, 739, 844, 856
BshNI GGYRCC 1 cut(s) 390
BshTI ACCGGT 3 cut(s) 177, 264, 759
BsiEI CGRYCG 1 cut(s) 963
BsiHKAI GWGCWC 3 cut(s) 534, 824, 878
BsiHKCI CYCGRG 3 cut(s) 533, 734, 845
BslFI GGGAC 2 cut(s) 597, 637
BslI CCNNNNNNNGG 5 cut(s) 246, 387, 645, 648, 852
BsmAI GTCTC 2 cut(s) 580, 842
BsmBI CGTCTC 2 cut(s) 580, 842
BsmFI GGGAC 2 cut(s) 597, 637
BsnI GGCC 8 cut(s) 239, 374, 380, 510, 605, 739, 844, 856
BsoBI CYCGRG 3 cut(s) 533, 734, 845
Bsp1286I GDGCHC 4 cut(s) 507, 534, 824, 878
Bsp143I GATC 4 cut(s) 85, 139, 324, 960
Bsp1720I GCTNAGC 2 cut(s) 113, 710
BspANI GGCC 8 cut(s) 239, 374, 380, 510, 605, 739, 844, 856
BspCNI CTCAG 5 cut(s) 33, 126, 702, 804, 927
BspFNI CGCG 8 cut(s) 400, 471, 495, 521, 528, 611, 677, 907
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 3 cut(s) 392, 448, 653
BspOI GCTAGC 1 cut(s) 623
BspPI GGATC 1 cut(s) 319
BspT107I GGYRCC 1 cut(s) 390
BsrDI GCAATG 1 cut(s) 538
BsrFI RCCGGY 6 cut(s) 177, 212, 264, 290, 473, 759
BsrI ACTGG 2 cut(s) 251, 658
BssAI RCCGGY 6 cut(s) 177, 212, 264, 290, 473, 759
BssECI CCNNGG 3 cut(s) 349, 375, 734
BssMI GATC 4 cut(s) 85, 139, 324, 960
BssNI GRCGYC 1 cut(s) 589
BssSI CACGAG 1 cut(s) 860
BssT1I CCWWGG 1 cut(s) 375
Bst2BI CACGAG 1 cut(s) 860
Bst2UI CCWGG 3 cut(s) 219, 548, 602
Bst4CI ACNGT 4 cut(s) 554, 560, 892, 969
BstACI GRCGYC 1 cut(s) 589
BstBAI YACGTR 2 cut(s) 645, 829
BstDEI CTNAG 5 cut(s) 20, 113, 710, 812, 935
BstF5I GGATG 2 cut(s) 99, 822
BstFNI CGCG 8 cut(s) 400, 471, 495, 521, 528, 611, 677, 907
BstH2I RGCGCY 3 cut(s) 291, 363, 923
BstHHI GCGC 9 cut(s) 290, 362, 406, 473, 491, 497, 523, 613, 922
BstKTI GATC 4 cut(s) 88, 142, 327, 963
BstMAI GTCTC 2 cut(s) 580, 842
BstMBI GATC 4 cut(s) 85, 139, 324, 960
BstMCI CGRYCG 1 cut(s) 963
BstNI CCWGG 3 cut(s) 219, 548, 602
BstNSI RCATGY 1 cut(s) 165
BstSCI CCNGG 7 cut(s) 217, 500, 546, 600, 733, 734, 750
BstUI CGCG 8 cut(s) 400, 471, 495, 521, 528, 611, 677, 907
BstV1I GCAGC 3 cut(s) 37, 450, 693
BstV2I GAAGAC 1 cut(s) 88
BsuRI GGCC 8 cut(s) 239, 374, 380, 510, 605, 739, 844, 856
BtsCI GGATG 2 cut(s) 99, 822
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 2 cut(s) 361, 956
CciI TCATGA 1 cut(s) 765
CfoI GCGC 9 cut(s) 290, 362, 406, 473, 491, 497, 523, 613, 922
Cfr10I RCCGGY 6 cut(s) 177, 212, 264, 290, 473, 759
Cfr13I GGNCC 8 cut(s) 215, 237, 249, 463, 651, 737, 745, 843
Cfr9I CCCGGG 1 cut(s) 734
CseI GACGC 2 cut(s) 527, 597
Csp6I GTAC 3 cut(s) 200, 661, 888
CspAI ACCGGT 3 cut(s) 177, 264, 759
CviAII CATG 3 cut(s) 162, 385, 766
CviQI GTAC 3 cut(s) 200, 661, 888
DdeI CTNAG 5 cut(s) 20, 113, 710, 812, 935
DpnI GATC 4 cut(s) 87, 141, 326, 962
DpnII GATC 4 cut(s) 85, 139, 324, 960
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 2 cut(s) 372, 508
EciI GGCGGA 2 cut(s) 554, 628
Ecl136II GAGCTC 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 375
Eco24I GRGCYC 2 cut(s) 507, 534
Eco47I GGWCC 5 cut(s) 215, 249, 463, 651, 745
Eco47III AGCGCT 1 cut(s) 921
Eco53kI GAGCTC 1 cut(s) 532
Eco72I CACGTG 2 cut(s) 645, 829
Eco88I CYCGRG 3 cut(s) 533, 734, 845
EcoICRI GAGCTC 1 cut(s) 532
EcoO109I RGGNCCY 1 cut(s) 463
EcoRII CCWGG 3 cut(s) 217, 546, 600
EcoT14I CCWWGG 1 cut(s) 375
EcoT38I GRGCYC 2 cut(s) 507, 534
ErhI CCWWGG 1 cut(s) 375
Esp3I CGTCTC 2 cut(s) 580, 842
FaeI CATG 3 cut(s) 165, 388, 769
FaiI YATR 5 cut(s) 163, 386, 596, 632, 767
FaqI GGGAC 2 cut(s) 597, 637
FatI CATG 3 cut(s) 161, 384, 765
FauI CCCGC 2 cut(s) 711, 830
Fnu4HI GCNGC 8 cut(s) 51, 381, 439, 442, 445, 498, 624, 707
FokI GGATG 2 cut(s) 86, 829
FriOI GRGCYC 2 cut(s) 507, 534
Fsp4HI GCNGC 8 cut(s) 51, 381, 439, 442, 445, 498, 624, 707
FspBI CTAG 3 cut(s) 30, 620, 974
FspI TGCGCA 1 cut(s) 490
GlaI GCGC 9 cut(s) 289, 361, 405, 472, 490, 496, 522, 612, 921
GluI GCNGC 8 cut(s) 51, 381, 439, 442, 445, 498, 624, 707
GsuI CTGGAG 1 cut(s) 530
HaeII RGCGCY 3 cut(s) 291, 363, 923
HaeIII GGCC 8 cut(s) 239, 374, 380, 510, 605, 739, 844, 856
HgaI GACGC 2 cut(s) 527, 597
HhaI GCGC 9 cut(s) 290, 362, 406, 473, 491, 497, 523, 613, 922
Hin1I GRCGYC 1 cut(s) 589
Hin1II CATG 3 cut(s) 165, 388, 769
Hin6I GCGC 9 cut(s) 288, 360, 404, 471, 489, 495, 521, 611, 920
HinP1I GCGC 9 cut(s) 288, 360, 404, 471, 489, 495, 521, 611, 920
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 1 cut(s) 254
HphI GGTGA 3 cut(s) 254, 1016, 1031
Hpy166II GTNNAC 1 cut(s) 748
Hpy188I TCNGA 8 cut(s) 23, 61, 139, 253, 320, 329, 580, 870
Hpy188III TCNNGA 2 cut(s) 30, 766
Hpy8I GTNNAC 1 cut(s) 748
Hpy99I CGWCG 3 cut(s) 95, 521, 591
HpyAV CCTTC 2 cut(s) 454, 763
HpyCH4III ACNGT 4 cut(s) 554, 560, 892, 969
HpyCH4IV ACGT 5 cut(s) 150, 573, 644, 729, 828
HpyCH4V TGCA 4 cut(s) 53, 108, 165, 726
HpyF3I CTNAG 5 cut(s) 20, 113, 710, 812, 935
HpySE526I ACGT 5 cut(s) 150, 573, 644, 729, 828
Hsp92I GRCGYC 1 cut(s) 589
Hsp92II CATG 3 cut(s) 165, 388, 769
HspAI GCGC 9 cut(s) 288, 360, 404, 471, 489, 495, 521, 611, 920
Kzo9I GATC 4 cut(s) 85, 139, 324, 960
LmnI GCTCC 5 cut(s) 122, 221, 452, 528, 616
Lsp1109I GCAGC 3 cut(s) 37, 450, 693
MaeI CTAG 3 cut(s) 30, 620, 974
MaeII ACGT 5 cut(s) 150, 573, 644, 729, 828
MaeIII GTNAC 2 cut(s) 293, 554
MalI GATC 4 cut(s) 87, 141, 326, 962
MboI GATC 4 cut(s) 85, 139, 324, 960
MboII GAAGA 3 cut(s) 45, 58, 88
MhlI GDGCHC 4 cut(s) 507, 534, 824, 878
MlsI TGGCCA 1 cut(s) 374
MluCI AATT 2 cut(s) 895, 1011
MluI ACGCGT 2 cut(s) 398, 675
MluNI TGGCCA 1 cut(s) 374
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 2 cut(s) 276, 777
Mox20I TGGCCA 1 cut(s) 374
MroXI GAANNNNTTC 2 cut(s) 179, 761
MscI TGGCCA 1 cut(s) 374
MslI CAYNNNNRTG 1 cut(s) 399
Msp20I TGGCCA 1 cut(s) 374
MspA1I CMGCKG 3 cut(s) 50, 441, 706
MspR9I CCNGG 7 cut(s) 219, 502, 548, 602, 735, 736, 752
MvaI CCWGG 3 cut(s) 219, 548, 602
MvnI CGCG 8 cut(s) 400, 471, 495, 521, 528, 611, 677, 907
NciI CCSGG 4 cut(s) 502, 735, 736, 752
NdeII GATC 4 cut(s) 85, 139, 324, 960
NheI GCTAGC 1 cut(s) 619
NlaIII CATG 3 cut(s) 165, 388, 769
NlaIV GGNNCC 3 cut(s) 392, 448, 653
NmeAIII GCCGAG 2 cut(s) 236, 486
NsbI TGCGCA 1 cut(s) 490
NspI RCATGY 1 cut(s) 165
OliI CACNNNNGTG 1 cut(s) 399
PagI TCATGA 1 cut(s) 765
PcsI WCGNNNNNNNCGW 4 cut(s) 90, 513, 525, 726
PdmI GAANNNNTTC 2 cut(s) 179, 761
PflMI CCANNNNNTGG 1 cut(s) 246
PfoI TCCNGGA 2 cut(s) 217, 546
PinAI ACCGGT 3 cut(s) 177, 264, 759
PkrI GCNGC 8 cut(s) 52, 382, 440, 443, 446, 499, 625, 708
Ple19I CGATCG 1 cut(s) 963
PleI GAGTC 1 cut(s) 248
PmaCI CACGTG 2 cut(s) 645, 829
PmlI CACGTG 2 cut(s) 645, 829
PpsI GAGTC 1 cut(s) 248
Ppu21I YACGTR 2 cut(s) 645, 829
PpuMI RGGWCCY 1 cut(s) 463
PsiI TTATAA 1 cut(s) 632
Psp124BI GAGCTC 1 cut(s) 534
Psp1406I AACGTT 1 cut(s) 729
Psp5II RGGWCCY 1 cut(s) 463
Psp6I CCWGG 3 cut(s) 217, 546, 600
PspCI CACGTG 2 cut(s) 645, 829
PspGI CCWGG 3 cut(s) 217, 546, 600
PspN4I GGNNCC 3 cut(s) 392, 448, 653
PspPI GGNCC 8 cut(s) 215, 237, 249, 463, 651, 737, 745, 843
PspPPI RGGWCCY 1 cut(s) 463
PvuI CGATCG 1 cut(s) 963
RsaI GTAC 3 cut(s) 201, 662, 889
RsaNI GTAC 3 cut(s) 200, 661, 888
RseI CAYNNNNRTG 1 cut(s) 399
SacI GAGCTC 1 cut(s) 534
SatI GCNGC 8 cut(s) 51, 381, 439, 442, 445, 498, 624, 707
Sau3AI GATC 4 cut(s) 85, 139, 324, 960
Sau96I GGNCC 8 cut(s) 215, 237, 249, 463, 651, 737, 745, 843
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 7 cut(s) 219, 502, 548, 602, 735, 736, 752
SduI GDGCHC 4 cut(s) 507, 534, 824, 878
SgrAI CRCCGGYG 1 cut(s) 473
SinI GGWCC 5 cut(s) 215, 249, 463, 651, 745
SmaI CCCGGG 1 cut(s) 736
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 2 cut(s) 895, 1011
SspMI CTAG 3 cut(s) 30, 620, 974
SstI GAGCTC 1 cut(s) 534
StyD4I CCNGG 7 cut(s) 217, 500, 546, 600, 733, 734, 750
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 4 cut(s) 554, 560, 892, 969
TaiI ACGT 5 cut(s) 153, 576, 647, 732, 831
TaqI TCGA 5 cut(s) 69, 206, 300, 516, 963
TaqII GACCGA 1 cut(s) 868
TasI AATT 2 cut(s) 895, 1011
TauI GCSGC 5 cut(s) 383, 444, 447, 500, 626
TscAI CASTG 2 cut(s) 361, 956
TseI GCWGC 3 cut(s) 50, 438, 706
TspDTI ATGAA 3 cut(s) 88, 754, 782
TspMI CCCGGG 1 cut(s) 734
TspRI CASTG 2 cut(s) 361, 956
Van91I CCANNNNNTGG 1 cut(s) 246
VpaK11BI GGWCC 5 cut(s) 215, 249, 463, 651, 745
XbaI TCTAGA 1 cut(s) 29
XceI RCATGY 1 cut(s) 165
XmaI CCCGGG 1 cut(s) 734
XmnI GAANNNNTTC 2 cut(s) 179, 761
XspI CTAG 3 cut(s) 30, 620, 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.