pycom14g13050

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0004321
Physical Location & Seq
Reverse (-)
16064085 .. 16065335
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g13050.3

Sequence Viewer

Length: 1065 bp
ATGGAGGCGGCGACGCTGCAAAGAAAAAAGCTCAGAAGCTCCCGCCGATCAACCGCCGCCGCGAAGTCGGATTTCTTTGACGGCTTGCCCGACGATCTCGTTGTCTTCGTCCTCTGCAAGCTCAGCTCCTCCGCTTCCTCGCCGTCCGATCTCATCAACGTCCTCATCACTTGTAAGAGATTGAACCGGTTAGGACTCCACTCTCTGGTGTTATCAAAGGCCGGTCCAAAAGCATTTGCAATCCGGGCCAAGAACTGGTCCGATTCGGCTCACCGGTTTCTCAAACAGTGCGTCACCGCCGGTAACATTGAAGCTTCCTACACTCTCGGAATGATCCGATTTTACTGTTTACAAAACCGAGGGAGCGGGGCGTCGCTCATGGCGAAAGCCGCCATGAGAGCCCACGCGCCTGCGCTGTACTCGCTCGCCGTGATTCAGTTTAACGGCAGCGGCTACTCCAAGAAAGATAAGGACCTGCGAGCTGGCGTGGCTCTCTGCGCGCGAGCCGCTTCCCTCGGCCACGTCGACGCGCTTCGCGAGCTCGGCCATTGCCTCCAGGACGGTTATGGAGTCAAGCAGAACGTCACCGAGGGACGCCGCTTGCTTGTCCAGGCCAACGCGCGGGAGCTCGCATCCGTTCTACGCTCCTCCGCGGCGTGGCGGTCCCACCACTACCAGCACTTCTACGCCTGCCTGACGGGGCTGGTCAGCTGCCCACTGCTGAGCGACTTCGGGTGCAACGTTCCGCCTCCGGAGCTCCACCCTGCGAACCGGTTCATGAGGGAGTGGTTCGGGTCGGGGCGGTGGATGGCGGGGCAGGGAATGAAGCTGTGCTCGCACGTGGGGTGCGGGCGGCCCGAGACGATGCCGCACGAGTTTAGGAGGTGCTCGGTTTGCGGAACGGTGAATTATTGCTCGCGTGGGTGCCAAGCGCTTGATTGGAAGCTGCGACACAAAGTCAAGTGTAAGCCGATCGAACGGTGGCTGGCGGTTGACGGTGAGGCAGGGGAGGAGTTGGGGGGACCGGTGGAGGGTGAAGAAGGTGACAATATGGCCGTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sel1 zf-MYND

Protein Analysis

355

Amino Acids

38.68

Weight (kDa)

9.35

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 483
AccB1I GGYRCC 1 cut(s) 924
AccB7I CCANNNNNTGG 2 cut(s) 205, 255
AccBSI CCGCTC 1 cut(s) 366
AccI GTMKAC 1 cut(s) 525
AccIII TCCGGA 1 cut(s) 751
AclI AACGTT 1 cut(s) 741
AclWI GGATC 1 cut(s) 328
AcoI YGGCCR 3 cut(s) 517, 544, 1053
AcvI CACGTG 1 cut(s) 841
AcyI GRCGYC 2 cut(s) 371, 595
AfaI GTAC 1 cut(s) 419
AfeI AGCGCT 1 cut(s) 933
AfiI CCNNNNNNNGG 5 cut(s) 205, 255, 621, 657, 1031
AgeI ACCGGT 4 cut(s) 186, 273, 771, 1024
AgsI TTSAA 2 cut(s) 184, 311
AhdI GACNNNNNGTC 1 cut(s) 956
AjiI CACGTC 1 cut(s) 523
AjnI CCWGG 2 cut(s) 555, 609
Alw21I GWGCWC 5 cut(s) 543, 630, 759, 836, 890
Alw26I GTCTC 1 cut(s) 854
AlwI GGATC 1 cut(s) 328
Ama87I CYCGRG 1 cut(s) 857
Aor13HI TCCGGA 1 cut(s) 751
Aor51HI AGCGCT 1 cut(s) 933
AoxI GGCC 7 cut(s) 219, 246, 517, 544, 612, 854, 1053
ApeKI GCWGC 4 cut(s) 16, 447, 711, 946
ArsI GACNNNNNNTTYG 2 cut(s) 276, 308
AsiGI ACCGGT 4 cut(s) 186, 273, 771, 1024
Asp700I GAANNNNTTC 1 cut(s) 773
AspLEI GCGC 7 cut(s) 409, 415, 500, 502, 532, 622, 934
AspS9I GGNCC 7 cut(s) 224, 246, 258, 472, 663, 855, 1022
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 7 cut(s) 263, 286, 577, 916, 1010, 1046, 1055
AvaI CYCGRG 1 cut(s) 857
AvaII GGWCC 5 cut(s) 224, 258, 472, 663, 1022
BanI GGYRCC 1 cut(s) 924
BanII GRGCYC 4 cut(s) 403, 543, 630, 759
BauI CACGAG 1 cut(s) 872
BbrPI CACGTG 1 cut(s) 841
BbsI GAAGAC 1 cut(s) 97
Bbv12I GWGCWC 5 cut(s) 543, 630, 759, 836, 890
BbvI GCAGC 4 cut(s) 3, 459, 698, 933
BccI CCATC 1 cut(s) 802
BceAI ACGGC 5 cut(s) 97, 127, 413, 460, 1040
BciT130I CCWGG 2 cut(s) 557, 611
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 854
BfoI RGCGCY 1 cut(s) 935
BfuAI ACCTGC 1 cut(s) 483
BlpI GCTNAGC 2 cut(s) 122, 722
Bme1390I CCNGG 3 cut(s) 245, 557, 611
Bme18I GGWCC 5 cut(s) 224, 258, 472, 663, 1022
BmeRI GACNNNNNGTC 1 cut(s) 956
BmeT110I CYCGRG 1 cut(s) 857
BmgBI CACGTC 1 cut(s) 523
BmgT120I GGNCC 7 cut(s) 224, 246, 258, 472, 663, 855, 1022
BmiI GGNNCC 3 cut(s) 665, 926, 1023
BmrFI CCNGG 3 cut(s) 245, 557, 611
BmsI GCATC 2 cut(s) 641, 855
BpiI GAAGAC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 539
Bpu1102I GCTNAGC 2 cut(s) 122, 722
BpuMI CCSGG 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 841
BsaHI GRCGYC 2 cut(s) 371, 595
BsaJI CCNNGG 4 cut(s) 358, 514, 588, 651
BsaWI WCCGGW 5 cut(s) 186, 273, 751, 771, 1024
Bsc4I CCNNNNNNNGG 5 cut(s) 205, 255, 621, 657, 1031
Bse118I RCCGGY 6 cut(s) 186, 221, 273, 299, 771, 1024
Bse1I ACTGG 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 547
BseAI TCCGGA 1 cut(s) 751
BseBI CCWGG 2 cut(s) 557, 611
BseDI CCNNGG 4 cut(s) 358, 514, 588, 651
BseGI GGATG 2 cut(s) 632, 813
BseLI CCNNNNNNNGG 5 cut(s) 205, 255, 621, 657, 1031
BseMI GCAATG 1 cut(s) 547
BseMII CTCAG 3 cut(s) 46, 136, 713
BseNI ACTGG 1 cut(s) 260
BsePI GCGCGC 1 cut(s) 498
BseRI GAGGAG 3 cut(s) 118, 637, 1025
BseXI GCAGC 4 cut(s) 3, 459, 698, 933
Bsh1285I CGRYCG 1 cut(s) 975
BshFI GGCC 7 cut(s) 221, 248, 519, 546, 614, 856, 1055
BshNI GGYRCC 1 cut(s) 924
BshTI ACCGGT 4 cut(s) 186, 273, 771, 1024
BsiEI CGRYCG 1 cut(s) 975
BsiHKAI GWGCWC 5 cut(s) 543, 630, 759, 836, 890
BsiHKCI CYCGRG 1 cut(s) 857
BsiSI CCGG 8 cut(s) 187, 222, 244, 274, 300, 752, 772, 1025
BslFI GGGAC 3 cut(s) 606, 649, 1035
BslI CCNNNNNNNGG 5 cut(s) 205, 255, 621, 657, 1031
BsmAI GTCTC 1 cut(s) 854
BsmBI CGTCTC 1 cut(s) 854
BsmFI GGGAC 3 cut(s) 606, 649, 1035
BsnI GGCC 7 cut(s) 221, 248, 519, 546, 614, 856, 1055
BsoBI CYCGRG 1 cut(s) 857
Bsp1286I GDGCHC 6 cut(s) 403, 543, 630, 759, 836, 890
Bsp13I TCCGGA 1 cut(s) 751
Bsp143I GATC 5 cut(s) 47, 94, 148, 333, 972
Bsp1720I GCTNAGC 2 cut(s) 122, 722
Bsp68I TCGCGA 1 cut(s) 537
BspANI GGCC 7 cut(s) 221, 248, 519, 546, 614, 856, 1055
BspCNI CTCAG 3 cut(s) 45, 135, 714
BspEI TCCGGA 1 cut(s) 751
BspHI TCATGA 1 cut(s) 777
BspLI GGNNCC 3 cut(s) 665, 926, 1023
BspMI ACCTGC 1 cut(s) 483
BspPI GGATC 1 cut(s) 328
BspT107I GGYRCC 1 cut(s) 924
BsrBI CCGCTC 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 547
BsrFI RCCGGY 6 cut(s) 186, 221, 273, 299, 771, 1024
BsrI ACTGG 1 cut(s) 260
BssAI RCCGGY 6 cut(s) 186, 221, 273, 299, 771, 1024
BssECI CCNNGG 4 cut(s) 358, 514, 588, 651
BssHII GCGCGC 1 cut(s) 498
BssMI GATC 5 cut(s) 47, 94, 148, 333, 972
BssNI GRCGYC 2 cut(s) 371, 595
BssSI CACGAG 1 cut(s) 872
Bst2BI CACGAG 1 cut(s) 872
Bst2UI CCWGG 2 cut(s) 557, 611
Bst4CI ACNGT 6 cut(s) 288, 347, 563, 904, 981, 998
BstACI GRCGYC 2 cut(s) 371, 595
BstBAI YACGTR 1 cut(s) 841
BstDEI CTNAG 3 cut(s) 32, 122, 722
BstDSI CCRYGG 1 cut(s) 651
BstF5I GGATG 2 cut(s) 632, 813
BstH2I RGCGCY 1 cut(s) 935
BstHHI GCGC 7 cut(s) 409, 415, 500, 502, 532, 622, 934
BstKTI GATC 5 cut(s) 50, 97, 151, 336, 975
BstMAI GTCTC 1 cut(s) 854
BstMBI GATC 5 cut(s) 47, 94, 148, 333, 972
BstMCI CGRYCG 1 cut(s) 975
BstNI CCWGG 2 cut(s) 557, 611
BstSCI CCNGG 3 cut(s) 243, 555, 609
BstV1I GCAGC 4 cut(s) 3, 459, 698, 933
BstV2I GAAGAC 1 cut(s) 97
BsuRI GGCC 7 cut(s) 221, 248, 519, 546, 614, 856, 1055
BtgI CCRYGG 1 cut(s) 651
BtrI CACGTC 1 cut(s) 523
BtsCI GGATG 2 cut(s) 632, 813
BtsI GCAGTG 1 cut(s) 716
BtsIMutI CAGTG 2 cut(s) 293, 716
BtuMI TCGCGA 1 cut(s) 537
BveI ACCTGC 1 cut(s) 483
CciI TCATGA 1 cut(s) 777
CfoI GCGC 7 cut(s) 409, 415, 500, 502, 532, 622, 934
Cfr10I RCCGGY 6 cut(s) 186, 221, 273, 299, 771, 1024
Cfr13I GGNCC 7 cut(s) 224, 246, 258, 472, 663, 855, 1022
Cfr42I CCGCGG 1 cut(s) 654
CseI GACGC 5 cut(s) 22, 280, 360, 536, 603
Csp6I GTAC 1 cut(s) 418
CspAI ACCGGT 4 cut(s) 186, 273, 771, 1024
CviAII CATG 3 cut(s) 379, 394, 778
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 3 cut(s) 32, 122, 722
DpnI GATC 5 cut(s) 49, 96, 150, 335, 974
DpnII GATC 5 cut(s) 47, 94, 148, 333, 972
DriI GACNNNNNGTC 1 cut(s) 956
EaeI YGGCCR 3 cut(s) 517, 544, 1053
Eam1105I GACNNNNNGTC 1 cut(s) 956
EciI GGCGGA 1 cut(s) 735
Ecl136II GAGCTC 3 cut(s) 541, 628, 757
Eco24I GRGCYC 4 cut(s) 403, 543, 630, 759
Eco47I GGWCC 5 cut(s) 224, 258, 472, 663, 1022
Eco47III AGCGCT 1 cut(s) 933
Eco53kI GAGCTC 3 cut(s) 541, 628, 757
Eco72I CACGTG 1 cut(s) 841
Eco88I CYCGRG 1 cut(s) 857
EcoICRI GAGCTC 3 cut(s) 541, 628, 757
EcoO109I RGGNCCY 1 cut(s) 472
EcoRII CCWGG 2 cut(s) 555, 609
EcoT38I GRGCYC 4 cut(s) 403, 543, 630, 759
Esp3I CGTCTC 1 cut(s) 854
FaeI CATG 3 cut(s) 382, 397, 781
FaiI YATR 5 cut(s) 380, 395, 567, 779, 1052
FaqI GGGAC 3 cut(s) 606, 649, 1035
FatI CATG 3 cut(s) 378, 393, 777
FauI CCCGC 5 cut(s) 50, 359, 615, 805, 842
FblI GTMKAC 1 cut(s) 525
FokI GGATG 2 cut(s) 619, 820
FriOI GRGCYC 4 cut(s) 403, 543, 630, 759
GlaI GCGC 7 cut(s) 408, 414, 499, 501, 531, 621, 933
GsuI CTGGAG 1 cut(s) 539
HaeII RGCGCY 1 cut(s) 935
HaeIII GGCC 7 cut(s) 221, 248, 519, 546, 614, 856, 1055
HapII CCGG 8 cut(s) 187, 222, 244, 274, 300, 752, 772, 1025
HgaI GACGC 5 cut(s) 22, 280, 360, 536, 603
HhaI GCGC 7 cut(s) 409, 415, 500, 502, 532, 622, 934
Hin1I GRCGYC 2 cut(s) 371, 595
Hin1II CATG 3 cut(s) 382, 397, 781
Hin6I GCGC 7 cut(s) 407, 413, 498, 500, 530, 620, 932
HinP1I GCGC 7 cut(s) 407, 413, 498, 500, 530, 620, 932
HincII GTYRAC 2 cut(s) 526, 994
HindII GTYRAC 2 cut(s) 526, 994
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 4 cut(s) 195, 263, 433, 570
HpaII CCGG 8 cut(s) 187, 222, 244, 274, 300, 752, 772, 1025
HphI GGTGA 7 cut(s) 263, 286, 577, 916, 1010, 1046, 1055
Hpy166II GTNNAC 3 cut(s) 350, 526, 994
Hpy188I TCNGA 6 cut(s) 35, 70, 148, 262, 329, 338
Hpy188III TCNNGA 3 cut(s) 536, 752, 778
Hpy8I GTNNAC 3 cut(s) 350, 526, 994
Hpy99I CGWCG 5 cut(s) 16, 95, 376, 527, 530
HpyAV CCTTC 1 cut(s) 1034
HpyCH4III ACNGT 6 cut(s) 288, 347, 563, 904, 981, 998
HpyCH4IV ACGT 5 cut(s) 159, 522, 582, 741, 840
HpyCH4V TGCA 4 cut(s) 19, 117, 239, 738
HpyF3I CTNAG 3 cut(s) 32, 122, 722
HpySE526I ACGT 5 cut(s) 159, 522, 582, 741, 840
Hsp92I GRCGYC 2 cut(s) 371, 595
Hsp92II CATG 3 cut(s) 382, 397, 781
HspAI GCGC 7 cut(s) 407, 413, 498, 500, 530, 620, 932
Kpn2I TCCGGA 1 cut(s) 751
KspI CCGCGG 1 cut(s) 654
Kzo9I GATC 5 cut(s) 47, 94, 148, 333, 972
LmnI GCTCC 7 cut(s) 44, 131, 363, 625, 650, 754, 762
Lsp1109I GCAGC 4 cut(s) 3, 459, 698, 933
LweI GCATC 2 cut(s) 641, 855
MaeII ACGT 5 cut(s) 159, 522, 582, 741, 840
MaeIII GTNAC 4 cut(s) 292, 302, 583, 1043
MalI GATC 5 cut(s) 49, 96, 150, 335, 974
MbiI CCGCTC 1 cut(s) 366
MboI GATC 5 cut(s) 47, 94, 148, 333, 972
MboII GAAGA 2 cut(s) 97, 1049
MhlI GDGCHC 6 cut(s) 403, 543, 630, 759, 836, 890
MluCI AATT 1 cut(s) 907
MlyI GAGTC 2 cut(s) 189, 579
MmeI TCCRAC 2 cut(s) 48, 1039
MroI TCCGGA 1 cut(s) 751
MroXI GAANNNNTTC 1 cut(s) 773
MseI TTAA 1 cut(s) 441
MspA1I CMGCKG 3 cut(s) 450, 653, 711
MspI CCGG 8 cut(s) 187, 222, 244, 274, 300, 752, 772, 1025
MspR9I CCNGG 3 cut(s) 245, 557, 611
MvaI CCWGG 2 cut(s) 557, 611
NciI CCSGG 1 cut(s) 245
NdeII GATC 5 cut(s) 47, 94, 148, 333, 972
NlaIII CATG 3 cut(s) 382, 397, 781
NlaIV GGNNCC 3 cut(s) 665, 926, 1023
NmeAIII GCCGAG 2 cut(s) 495, 522
NmuCI GTSAC 3 cut(s) 292, 583, 1043
NruI TCGCGA 1 cut(s) 537
PagI TCATGA 1 cut(s) 777
PauI GCGCGC 1 cut(s) 498
PcsI WCGNNNNNNNCGW 6 cut(s) 87, 105, 380, 522, 534, 738
PdmI GAANNNNTTC 1 cut(s) 773
PfeI GAWTC 2 cut(s) 263, 433
PflMI CCANNNNNTGG 2 cut(s) 205, 255
PfoI TCCNGGA 1 cut(s) 555
PinAI ACCGGT 4 cut(s) 186, 273, 771, 1024
Ple19I CGATCG 1 cut(s) 975
PleI GAGTC 2 cut(s) 189, 578
PmaCI CACGTG 1 cut(s) 841
PmlI CACGTG 1 cut(s) 841
PpsI GAGTC 2 cut(s) 189, 578
Ppu21I YACGTR 1 cut(s) 841
PpuMI RGGWCCY 1 cut(s) 472
Psp124BI GAGCTC 3 cut(s) 543, 630, 759
Psp1406I AACGTT 1 cut(s) 741
Psp5II RGGWCCY 1 cut(s) 472
Psp6I CCWGG 2 cut(s) 555, 609
PspCI CACGTG 1 cut(s) 841
PspGI CCWGG 2 cut(s) 555, 609
PspN4I GGNNCC 3 cut(s) 665, 926, 1023
PspPI GGNCC 7 cut(s) 224, 246, 258, 472, 663, 855, 1022
PspPPI RGGWCCY 1 cut(s) 472
PteI GCGCGC 1 cut(s) 498
PvuI CGATCG 1 cut(s) 975
PvuII CAGCTG 1 cut(s) 711
RruI TCGCGA 1 cut(s) 537
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
SacI GAGCTC 3 cut(s) 543, 630, 759
SacII CCGCGG 1 cut(s) 654
SalI GTCGAC 1 cut(s) 524
SaqAI TTAA 1 cut(s) 441
Sau3AI GATC 5 cut(s) 47, 94, 148, 333, 972
Sau96I GGNCC 7 cut(s) 224, 246, 258, 472, 663, 855, 1022
SchI GAGTC 2 cut(s) 189, 579
ScrFI CCNGG 3 cut(s) 245, 557, 611
SduI GDGCHC 6 cut(s) 403, 543, 630, 759, 836, 890
SfaNI GCATC 2 cut(s) 641, 855
Sfr303I CCGCGG 1 cut(s) 654
SgrBI CCGCGG 1 cut(s) 654
SgrDI CGTCGACG 1 cut(s) 524
SinI GGWCC 5 cut(s) 224, 258, 472, 663, 1022
Sse9I AATT 1 cut(s) 907
SstI GAGCTC 3 cut(s) 543, 630, 759
StyD4I CCNGG 3 cut(s) 243, 555, 609
TaaI ACNGT 6 cut(s) 288, 347, 563, 904, 981, 998
TaiI ACGT 5 cut(s) 162, 525, 585, 744, 843
TaqI TCGA 2 cut(s) 525, 975
TasI AATT 1 cut(s) 907
TatI WGTACW 1 cut(s) 417
TfiI GAWTC 2 cut(s) 263, 433
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 2 cut(s) 293, 723
TseFI GTSAC 3 cut(s) 292, 583, 1043
TseI GCWGC 4 cut(s) 16, 447, 711, 946
Tsp45I GTSAC 3 cut(s) 292, 583, 1043
TspDTI ATGAA 2 cut(s) 766, 839
TspGWI ACGGA 1 cut(s) 625
TspRI CASTG 2 cut(s) 293, 723
Van91I CCANNNNNTGG 2 cut(s) 205, 255
VpaK11BI GGWCC 5 cut(s) 224, 258, 472, 663, 1022
XcmI CCANNNNNNNNNTGG 1 cut(s) 563
XmiI GTMKAC 1 cut(s) 525
XmnI GAANNNNTTC 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.