MD06G1141800.v1.1

f-box protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
28519571 .. 28521212
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1141800.v1.1.491

Sequence Viewer

Length: 1065 bp
ATGGAGGCGGCGACGCTGCAAATAAAAAGGCTCAGAAGCTCCCGGCGCTCGACCACCGCCGCGAAGTCGGATTTCTTCGACGGCTTGCCCGACGATCTCGTCGTATTCATCCTCTGCAAGCTCAGCTCCTCCGCTTCCTCGCCTTCCGATCTCATCAGCGCCCTCATCACGTGTAAGAGATTGAACCGGTTAGGACTCCACTCTCTGGTGTTATCAAATGCCGGTCCAAAAGCATTCGCAATACGGGCCAAAAACTGGTCCGATTCGGCTCACCGGTTTCTCAAACAGTGCGTCGGCGCCGGTAACGTCGAAGCCTCCTACACTCTCGGAATGATCCGATTTTACTGTTTACAAAACCGAGGGAGCGGGGCCTCGCTCATGGCGAAAGCCGCCATGAGATCCCACGCGCCGGCGCTGTACTCGCTCGCGGTGATTCAGTTTAACGGCAGCGGCTGTTCGAAGAAAGGAAAGGACTTAAGAGCCGGCGTGGCTCTTTGCGCGCGAGCCGCTTCGCTCGGCCTCGTCGACGCACTCCGCGAGCTCGGCCATTGCCTCCAGGACGGTTACGGAGTCAAGCAAAACGTCGCCGAGGGACGCCGATTGCTGGTCCAGGCCAACGCACGGGAGCTCGCGTCCGTTCTACGTTCTTCCGCGGCGTGGCGGTCCCACCACTACCAGCACTTCTACGCGTGCCTGACGGGGCTGGTCAGCTGCCCTCTGCTGAGCGACTACGGATGCAACGTCCCCGTACCGGAGTTCCACCCCGCAAACCGGTTCATGAGGGAGTGGTTCGGGTCGGGGCGGTGGACGGCGGGGCAGGGTATGAGGCTGTGCTCTCACATGGGGTGCGGGCGGCCGGAGACGAGGCCGCACGAGTTTAGGAGGTGCTCGGTTTGCGGGACGGTGAATTATTGCTCGCGTGGGTGCCAAGCGCTGGACTGGAAGCTGAGACACAAAATGAAGTGTAAGCCGATGGAACGGTGGCTGGCGGTTGACGGTGAGGCAGAGGAGGAGTTGGGGGGACTGGTGCAGGGTGGGGAAGGTGAGAATGTGGCAGTTGGATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

355

Amino Acids

38.58

Weight (kDa)

9.4

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_27 PF23310 86 - 155 1.1e-12 Plant tetratrico peptide repeats
zf-MYND PF01753 283 - 322 9.7e-08 MYND finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
AccB1I GGYRCC 2 cut(s) 296, 924
AccB7I CCANNNNNTGG 3 cut(s) 205, 255, 934
AccBSI CCGCTC 1 cut(s) 366
AccI GTMKAC 1 cut(s) 525
AclWI GGATC 2 cut(s) 328, 393
AcoI YGGCCR 2 cut(s) 544, 854
AcvI CACGTG 1 cut(s) 171
AcyI GRCGYC 2 cut(s) 297, 595
AfaI GTAC 2 cut(s) 419, 750
AfeI AGCGCT 1 cut(s) 933
AfiI CCNNNNNNNGG 9 cut(s) 205, 255, 409, 604, 621, 657, 751, 771, 934
AflII CTTAAG 1 cut(s) 475
AflIII ACRYGT 2 cut(s) 170, 687
AgeI ACCGGT 3 cut(s) 186, 273, 771
AgsI TTSAA 1 cut(s) 184
AjnI CCWGG 2 cut(s) 555, 609
AluBI AGCT 7 cut(s) 39, 121, 126, 541, 628, 711, 946
AluI AGCT 7 cut(s) 39, 121, 126, 541, 628, 711, 946
Alw21I GWGCWC 4 cut(s) 543, 630, 836, 890
Alw26I GTCTC 2 cut(s) 854, 943
AlwI GGATC 2 cut(s) 328, 393
AlwNI CAGNNNCTG 1 cut(s) 453
Aor51HI AGCGCT 1 cut(s) 933
AoxI GGCC 7 cut(s) 246, 369, 517, 544, 612, 854, 866
ApeKI GCWGC 3 cut(s) 16, 447, 711
ArsI GACNNNNNNTTYG 2 cut(s) 276, 308
AsiGI ACCGGT 3 cut(s) 186, 273, 771
AspLEI GCGC 8 cut(s) 48, 161, 299, 409, 415, 500, 502, 934
AspS9I GGNCC 6 cut(s) 224, 246, 258, 369, 607, 663
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 5 cut(s) 263, 442, 916, 1010, 1055
AsuII TTCGAA 1 cut(s) 458
AvaII GGWCC 4 cut(s) 224, 258, 607, 663
BanI GGYRCC 2 cut(s) 296, 924
BanII GRGCYC 2 cut(s) 543, 630
BauI CACGAG 1 cut(s) 872
BbrPI CACGTG 1 cut(s) 171
Bbv12I GWGCWC 4 cut(s) 543, 630, 836, 890
BbvI GCAGC 3 cut(s) 3, 459, 698
BccI CCATC 1 cut(s) 967
BceAI ACGGC 3 cut(s) 97, 460, 825
BciT130I CCWGG 2 cut(s) 557, 611
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 2 cut(s) 854, 943
BfoI RGCGCY 5 cut(s) 49, 162, 300, 416, 935
BfrI CTTAAG 1 cut(s) 475
BglI GCCNNNNNGGC 1 cut(s) 488
BlpI GCTNAGC 2 cut(s) 122, 722
Bme1390I CCNGG 3 cut(s) 43, 557, 611
Bme18I GGWCC 4 cut(s) 224, 258, 607, 663
BmgT120I GGNCC 6 cut(s) 224, 246, 258, 369, 607, 663
BmiI GGNNCC 4 cut(s) 298, 370, 665, 926
BmrFI CCNGG 3 cut(s) 43, 557, 611
BmsI GCATC 1 cut(s) 725
BpmI CTGGAG 1 cut(s) 539
Bpu1102I GCTNAGC 2 cut(s) 122, 722
Bpu14I TTCGAA 1 cut(s) 458
BpuMI CCSGG 1 cut(s) 43
BsaAI YACGTR 1 cut(s) 171
BsaHI GRCGYC 2 cut(s) 297, 595
BsaJI CCNNGG 3 cut(s) 358, 588, 651
BsaWI WCCGGW 4 cut(s) 186, 273, 751, 771
BsaXI ACNNNNNCTCC 2 cut(s) 617, 647
Bsc4I CCNNNNNNNGG 9 cut(s) 205, 255, 409, 604, 621, 657, 751, 771, 934
Bse118I RCCGGY 7 cut(s) 186, 221, 273, 299, 409, 482, 771
Bse1I ACTGG 3 cut(s) 260, 944, 1029
Bse3DI GCAATG 1 cut(s) 547
BseBI CCWGG 2 cut(s) 557, 611
BseDI CCNNGG 3 cut(s) 358, 588, 651
BseGI GGATG 2 cut(s) 108, 740
BseLI CCNNNNNNNGG 9 cut(s) 205, 255, 409, 604, 621, 657, 751, 771, 934
BseMI GCAATG 1 cut(s) 547
BseMII CTCAG 4 cut(s) 46, 136, 713, 938
BseNI ACTGG 3 cut(s) 260, 944, 1029
BsePI GCGCGC 1 cut(s) 498
BseRI GAGGAG 3 cut(s) 118, 1022, 1025
BseX3I CGGCCG 1 cut(s) 854
BseXI GCAGC 3 cut(s) 3, 459, 698
BsgI GTGCAG 1 cut(s) 1049
Bsh1285I CGRYCG 1 cut(s) 857
BshFI GGCC 7 cut(s) 248, 371, 519, 546, 614, 856, 868
BshNI GGYRCC 2 cut(s) 296, 924
BshTI ACCGGT 3 cut(s) 186, 273, 771
BsiEI CGRYCG 1 cut(s) 857
BsiHKAI GWGCWC 4 cut(s) 543, 630, 836, 890
BslFI GGGAC 5 cut(s) 606, 649, 728, 913, 1035
BslI CCNNNNNNNGG 9 cut(s) 205, 255, 409, 604, 621, 657, 751, 771, 934
BsmAI GTCTC 2 cut(s) 854, 943
BsmBI CGTCTC 1 cut(s) 854
BsmFI GGGAC 5 cut(s) 606, 649, 728, 913, 1035
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 7 cut(s) 248, 371, 519, 546, 614, 856, 868
Bsp119I TTCGAA 1 cut(s) 458
Bsp1286I GDGCHC 4 cut(s) 543, 630, 836, 890
Bsp143I GATC 4 cut(s) 94, 148, 333, 398
Bsp1720I GCTNAGC 2 cut(s) 122, 722
BspANI GGCC 7 cut(s) 248, 371, 519, 546, 614, 856, 868
BspCNI CTCAG 4 cut(s) 45, 135, 714, 939
BspHI TCATGA 1 cut(s) 777
BspLI GGNNCC 4 cut(s) 298, 370, 665, 926
BspPI GGATC 2 cut(s) 328, 393
BspT104I TTCGAA 1 cut(s) 458
BspT107I GGYRCC 2 cut(s) 296, 924
BspTI CTTAAG 1 cut(s) 475
BsrBI CCGCTC 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 547
BsrFI RCCGGY 7 cut(s) 186, 221, 273, 299, 409, 482, 771
BsrI ACTGG 3 cut(s) 260, 944, 1029
BssAI RCCGGY 7 cut(s) 186, 221, 273, 299, 409, 482, 771
BssECI CCNNGG 3 cut(s) 358, 588, 651
BssHII GCGCGC 1 cut(s) 498
BssMI GATC 4 cut(s) 94, 148, 333, 398
BssNI GRCGYC 2 cut(s) 297, 595
BssSI CACGAG 1 cut(s) 872
Bst2BI CACGAG 1 cut(s) 872
Bst2UI CCWGG 2 cut(s) 557, 611
Bst4CI ACNGT 6 cut(s) 288, 347, 563, 904, 981, 998
BstACI GRCGYC 2 cut(s) 297, 595
BstAFI CTTAAG 1 cut(s) 475
BstBAI YACGTR 1 cut(s) 171
BstBI TTCGAA 1 cut(s) 458
BstDEI CTNAG 4 cut(s) 32, 122, 722, 947
BstDSI CCRYGG 1 cut(s) 651
BstF5I GGATG 2 cut(s) 108, 740
BstH2I RGCGCY 5 cut(s) 49, 162, 300, 416, 935
BstHHI GCGC 8 cut(s) 48, 161, 299, 409, 415, 500, 502, 934
BstKTI GATC 4 cut(s) 97, 151, 336, 401
BstMAI GTCTC 2 cut(s) 854, 943
BstMBI GATC 4 cut(s) 94, 148, 333, 398
BstMCI CGRYCG 1 cut(s) 857
BstNI CCWGG 2 cut(s) 557, 611
BstSCI CCNGG 3 cut(s) 41, 555, 609
BstV1I GCAGC 3 cut(s) 3, 459, 698
BstX2I RGATCY 1 cut(s) 398
BstYI RGATCY 1 cut(s) 398
BstZI CGGCCG 1 cut(s) 854
BsuRI GGCC 7 cut(s) 248, 371, 519, 546, 614, 856, 868
BtgI CCRYGG 1 cut(s) 651
BtsCI GGATG 2 cut(s) 108, 740
BtsIMutI CAGTG 1 cut(s) 293
CaiI CAGNNNCTG 1 cut(s) 453
CciI TCATGA 1 cut(s) 777
CfoI GCGC 8 cut(s) 48, 161, 299, 409, 415, 500, 502, 934
Cfr10I RCCGGY 7 cut(s) 186, 221, 273, 299, 409, 482, 771
Cfr13I GGNCC 6 cut(s) 224, 246, 258, 369, 607, 663
Cfr42I CCGCGG 1 cut(s) 654
CseI GACGC 5 cut(s) 22, 280, 536, 603, 621
Csp6I GTAC 2 cut(s) 418, 749
CspAI ACCGGT 3 cut(s) 186, 273, 771
CviAII CATG 4 cut(s) 379, 394, 778, 841
CviQI GTAC 2 cut(s) 418, 749
DdeI CTNAG 4 cut(s) 32, 122, 722, 947
DinI GGCGCC 1 cut(s) 298
DpnI GATC 4 cut(s) 96, 150, 335, 400
DpnII GATC 4 cut(s) 94, 148, 333, 398
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 2 cut(s) 544, 854
EagI CGGCCG 1 cut(s) 854
Ecl136II GAGCTC 2 cut(s) 541, 628
EclXI CGGCCG 1 cut(s) 854
Eco24I GRGCYC 2 cut(s) 543, 630
Eco47I GGWCC 4 cut(s) 224, 258, 607, 663
Eco47III AGCGCT 1 cut(s) 933
Eco52I CGGCCG 1 cut(s) 854
Eco53kI GAGCTC 2 cut(s) 541, 628
Eco72I CACGTG 1 cut(s) 171
EcoICRI GAGCTC 2 cut(s) 541, 628
EcoO109I RGGNCCY 1 cut(s) 369
EcoRII CCWGG 2 cut(s) 555, 609
EcoT38I GRGCYC 2 cut(s) 543, 630
EgeI GGCGCC 1 cut(s) 298
EheI GGCGCC 1 cut(s) 298
Esp3I CGTCTC 1 cut(s) 854
FaeI CATG 4 cut(s) 382, 397, 781, 844
FaiI YATR 5 cut(s) 380, 395, 779, 824, 842
FaqI GGGAC 5 cut(s) 606, 649, 728, 913, 1035
FatI CATG 4 cut(s) 378, 393, 777, 840
FauI CCCGC 5 cut(s) 359, 772, 805, 842, 890
FblI GTMKAC 1 cut(s) 525
FokI GGATG 2 cut(s) 95, 747
FriOI GRGCYC 2 cut(s) 543, 630
GlaI GCGC 8 cut(s) 47, 160, 298, 408, 414, 499, 501, 933
GsuI CTGGAG 1 cut(s) 539
HaeII RGCGCY 5 cut(s) 49, 162, 300, 416, 935
HaeIII GGCC 7 cut(s) 248, 371, 519, 546, 614, 856, 868
HgaI GACGC 5 cut(s) 22, 280, 536, 603, 621
HhaI GCGC 8 cut(s) 48, 161, 299, 409, 415, 500, 502, 934
Hin1I GRCGYC 2 cut(s) 297, 595
Hin1II CATG 4 cut(s) 382, 397, 781, 844
Hin6I GCGC 8 cut(s) 46, 159, 297, 407, 413, 498, 500, 932
HinP1I GCGC 8 cut(s) 46, 159, 297, 407, 413, 498, 500, 932
HincII GTYRAC 2 cut(s) 526, 994
HindII GTYRAC 2 cut(s) 526, 994
HinfI GANTC 4 cut(s) 195, 263, 433, 570
HphI GGTGA 5 cut(s) 263, 442, 916, 1010, 1055
Hpy166II GTNNAC 4 cut(s) 350, 526, 807, 994
Hpy188I TCNGA 6 cut(s) 35, 70, 148, 262, 329, 338
Hpy188III TCNNGA 1 cut(s) 778
Hpy8I GTNNAC 4 cut(s) 350, 526, 807, 994
Hpy99I CGWCG 9 cut(s) 16, 83, 95, 104, 296, 311, 527, 530, 587
HpyAV CCTTC 2 cut(s) 153, 1034
HpyCH4III ACNGT 6 cut(s) 288, 347, 563, 904, 981, 998
HpyCH4IV ACGT 5 cut(s) 170, 306, 582, 643, 741
HpyCH4V TGCA 4 cut(s) 19, 117, 738, 1030
HpyF3I CTNAG 4 cut(s) 32, 122, 722, 947
HpySE526I ACGT 5 cut(s) 170, 306, 582, 643, 741
Hsp92I GRCGYC 2 cut(s) 297, 595
Hsp92II CATG 4 cut(s) 382, 397, 781, 844
HspAI GCGC 8 cut(s) 46, 159, 297, 407, 413, 498, 500, 932
KasI GGCGCC 1 cut(s) 296
KroI GCCGGC 2 cut(s) 409, 482
KroNI GCCGGC 2 cut(s) 411, 484
KspI CCGCGG 1 cut(s) 654
Kzo9I GATC 4 cut(s) 94, 148, 333, 398
LmnI GCTCC 4 cut(s) 44, 131, 363, 625
Lsp1109I GCAGC 3 cut(s) 3, 459, 698
LweI GCATC 1 cut(s) 725
MaeII ACGT 5 cut(s) 170, 306, 582, 643, 741
MaeIII GTNAC 2 cut(s) 302, 563
MalI GATC 4 cut(s) 96, 150, 335, 400
MbiI CCGCTC 1 cut(s) 366
MboI GATC 4 cut(s) 94, 148, 333, 398
MboII GAAGA 3 cut(s) 67, 472, 639
MflI RGATCY 1 cut(s) 398
MhlI GDGCHC 4 cut(s) 543, 630, 836, 890
MluCI AATT 1 cut(s) 907
MluI ACGCGT 1 cut(s) 687
Mly113I GGCGCC 1 cut(s) 297
MlyI GAGTC 2 cut(s) 189, 579
MmeI TCCRAC 2 cut(s) 48, 1039
MreI CGCCGGCG 1 cut(s) 409
MroNI GCCGGC 2 cut(s) 409, 482
MseI TTAA 2 cut(s) 441, 476
MspA1I CMGCKG 3 cut(s) 450, 653, 711
MspCI CTTAAG 1 cut(s) 475
MspR9I CCNGG 3 cut(s) 43, 557, 611
Mva1269I GAATGC 1 cut(s) 233
MvaI CCWGG 2 cut(s) 557, 611
NaeI GCCGGC 2 cut(s) 411, 484
NarI GGCGCC 1 cut(s) 297
NciI CCSGG 1 cut(s) 43
NdeII GATC 4 cut(s) 94, 148, 333, 398
NgoMIV GCCGGC 2 cut(s) 409, 482
NlaIII CATG 4 cut(s) 382, 397, 781, 844
NlaIV GGNNCC 4 cut(s) 298, 370, 665, 926
NmeAIII GCCGAG 3 cut(s) 495, 522, 613
NspV TTCGAA 1 cut(s) 458
PagI TCATGA 1 cut(s) 777
PauI GCGCGC 1 cut(s) 498
PcsI WCGNNNNNNNCGW 6 cut(s) 87, 99, 380, 522, 534, 738
PctI GAATGC 1 cut(s) 233
PdiI GCCGGC 2 cut(s) 411, 484
PfeI GAWTC 2 cut(s) 263, 433
PflMI CCANNNNNTGG 3 cut(s) 205, 255, 934
PfoI TCCNGGA 1 cut(s) 555
PinAI ACCGGT 3 cut(s) 186, 273, 771
PleI GAGTC 2 cut(s) 189, 578
PluTI GGCGCC 1 cut(s) 300
PmaCI CACGTG 1 cut(s) 171
PmlI CACGTG 1 cut(s) 171
PpsI GAGTC 2 cut(s) 189, 578
Ppu21I YACGTR 1 cut(s) 171
Psp124BI GAGCTC 2 cut(s) 543, 630
Psp6I CCWGG 2 cut(s) 555, 609
PspCI CACGTG 1 cut(s) 171
PspGI CCWGG 2 cut(s) 555, 609
PspN4I GGNNCC 4 cut(s) 298, 370, 665, 926
PspPI GGNCC 6 cut(s) 224, 246, 258, 369, 607, 663
PstNI CAGNNNCTG 1 cut(s) 453
PsuI RGATCY 1 cut(s) 398
PteI GCGCGC 1 cut(s) 498
PvuII CAGCTG 1 cut(s) 711
RsaI GTAC 2 cut(s) 419, 750
RsaNI GTAC 2 cut(s) 418, 749
SacI GAGCTC 2 cut(s) 543, 630
SacII CCGCGG 1 cut(s) 654
SalI GTCGAC 1 cut(s) 524
SaqAI TTAA 2 cut(s) 441, 476
Sau3AI GATC 4 cut(s) 94, 148, 333, 398
Sau96I GGNCC 6 cut(s) 224, 246, 258, 369, 607, 663
SchI GAGTC 2 cut(s) 189, 579
ScrFI CCNGG 3 cut(s) 43, 557, 611
SduI GDGCHC 4 cut(s) 543, 630, 836, 890
SfaNI GCATC 1 cut(s) 725
SfoI GGCGCC 1 cut(s) 298
Sfr303I CCGCGG 1 cut(s) 654
SfuI TTCGAA 1 cut(s) 458
SgrAI CRCCGGYG 1 cut(s) 409
SgrBI CCGCGG 1 cut(s) 654
SgrDI CGTCGACG 1 cut(s) 524
SinI GGWCC 4 cut(s) 224, 258, 607, 663
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
Sse9I AATT 1 cut(s) 907
SspDI GGCGCC 1 cut(s) 296
SstI GAGCTC 2 cut(s) 543, 630
StyD4I CCNGG 3 cut(s) 41, 555, 609
TaaI ACNGT 6 cut(s) 288, 347, 563, 904, 981, 998
TaiI ACGT 5 cut(s) 173, 309, 585, 646, 744
TaqI TCGA 5 cut(s) 50, 78, 309, 458, 525
TasI AATT 1 cut(s) 907
TatI WGTACW 1 cut(s) 417
TauI GCSGC 8 cut(s) 11, 62, 392, 453, 509, 656, 856, 871
TfiI GAWTC 2 cut(s) 263, 433
Tru1I TTAA 2 cut(s) 441, 476
Tru9I TTAA 2 cut(s) 441, 476
TscAI CASTG 1 cut(s) 293
TseI GCWGC 3 cut(s) 16, 447, 711
TspDTI ATGAA 3 cut(s) 97, 766, 974
TspGWI ACGGA 3 cut(s) 582, 625, 747
TspRI CASTG 1 cut(s) 293
Van91I CCANNNNNTGG 3 cut(s) 205, 255, 934
Vha464I CTTAAG 1 cut(s) 475
VpaK11BI GGWCC 4 cut(s) 224, 258, 607, 663
XmiI GTMKAC 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.