pycom13g10380

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0004321
Physical Location & Seq
Reverse (-)
6937926 .. 6939419
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g10380.1

Sequence Viewer

Length: 1212 bp
ATGAGGACCAGGGGCGGCGTTTGTTATCCGACAGTAGGCGGAGGAGTCGTAGGCGGAGGTGATGTGTGTTGTCAGAGGAAGAGGAAGAAGGAATTCGCCGGAGGAGAGCGGACGGTCTGCCGGAAAAGGAATAGATTCTCGCCGGGCACGACGACGACGACGACGACCACGTCGGCTCCCGATTCGTTCGACGCTTTGCCGGACGACCTCCTCATTCTTATCCTCTCGAAACTCAGCGCCACCGCCAACTCGCCGGCCGATTTCATCAACGTCTTGATAACATGCAAGCGGTTGAACGGCTTAGCTCTCCATTCTCCAGTGCTCTCCAAGGCTAATCCGAAAACGTTTATCCTGAAAGCCAAGAACTGGTCCGAGTCGGCTCACCGATTCCTCAAGCTTTGCGCCGACGCCGGCAATACCGAGGCTTGCTACACTCTTGGCATGATTCGCTTCTATTGTTTGCAAAACAGAGGAAGCGGAGCCTCGCTCATGGCCAAGGCGGCGATTGGCTCGCACGCGCCGGCGCTTTACTCTCTCGCCGTGATTCAGTTCAACGGCAGCGGAGGCTCCAAAAACGATAAGGACCTCCGGGCCGGAGTGGCGCTATGCGCGCGTGCCGCCTTTCTCGGCCACATCGACGCGCTGAGAGAGCTTGGGCACTGCCTCCAGGACGGTTACGGAGTGCGTCAGAACATAACGGAAGGGCGACGGTTTCTAGTGCAGGCCAACGCACGTGAACTCGCGGCGGTTCTATCCTCTGCGGCAGTTTCGGGAGTCCCCATGCGCCAGTTACTGACGTGGACTCCACTCCCTCACCCGCACCCTCATCCTCATCCGCAGCTGCGGCACCTGATCGGGTCGGGCTGCCCGCTGCTCAGCGACTTTGGGTGCAACGTTCCCGCCCCAGAGGTGCATCCGGCGAACCGATTTTTGGGAGAGTGGTTCGCTGCTCGGGACGGTTCGCCTGGACCGGGTTTGAGGCTTTGCTCGCACGTGGGATGTGGGAGGCCTGAGACTAGGAGACACGAGTTTCGTCGGTGTTCGGTATGTGGGGCCGTCAATTACTGTTCACGCGCGTGCCAGGCGCTTGATTGGAAGCTAAGCCACAAGGCTGAGTGTACTGCCTTTGAGCGGTGGGTGGATGAGGAGGGTGAGGGTGCGGACGATGACGGAGCTGCCAATGGGGGTGATGACGTTATGGCCGAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like zf-MYND

Protein Analysis

404

Amino Acids

43.2

Weight (kDa)

8.83

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_27 PF23310 122 - 192 5.2e-12 Plant tetratrico peptide repeats
zf-MYND PF01753 334 - 373 4.2e-08 MYND finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 169
AccB1I GGYRCC 1 cut(s) 846
AccB7I CCANNNNNTGG 1 cut(s) 366
AccBSI CCGCTC 2 cut(s) 109, 1132
AccII CGCG 7 cut(s) 518, 611, 613, 641, 743, 1074, 1076
AclI AACGTT 2 cut(s) 344, 894
AcoI YGGCCR 4 cut(s) 255, 492, 628, 1200
AcsI RAATTY 1 cut(s) 92
AcvI CACGTG 2 cut(s) 734, 994
AcyI GRCGYC 1 cut(s) 408
AfaI GTAC 1 cut(s) 1120
AfiI CCNNNNNNNGG 5 cut(s) 35, 366, 931, 971, 1131
AgsI TTSAA 2 cut(s) 295, 553
AjiI CACGTC 2 cut(s) 171, 798
AjnI CCWGG 4 cut(s) 8, 666, 964, 1080
AjuI GAANNNNNNNTTGG 2 cut(s) 914, 946
AleI CACNNNNGTG 1 cut(s) 1075
AluBI AGCT 6 cut(s) 305, 397, 652, 841, 1099, 1175
AluI AGCT 6 cut(s) 305, 397, 652, 841, 1099, 1175
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 2 cut(s) 1007, 1015
AlwNI CAGNNNCTG 1 cut(s) 793
Ama87I CYCGRG 1 cut(s) 951
AoxI GGCC 8 cut(s) 255, 492, 591, 628, 723, 1007, 1053, 1200
ApeKI GCWGC 7 cut(s) 558, 838, 841, 864, 871, 947, 1175
ApoI RAATTY 1 cut(s) 92
ArsI GACNNNNNNTTYG 2 cut(s) 1014, 1046
Asp700I GAANNNNTTC 2 cut(s) 92, 134
AspS9I GGNCC 6 cut(s) 6, 369, 583, 591, 968, 1053
AsuC2I CCSGG 3 cut(s) 144, 590, 972
AsuHPI GGTGA 5 cut(s) 71, 374, 806, 1163, 1199
AvaI CYCGRG 1 cut(s) 951
AvaII GGWCC 4 cut(s) 6, 369, 583, 968
BaeGI GKGCMC 2 cut(s) 149, 660
BalI TGGCCA 1 cut(s) 494
BanI GGYRCC 1 cut(s) 846
BauI CACGAG 1 cut(s) 1025
BbrPI CACGTG 2 cut(s) 734, 994
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 7 cut(s) 570, 828, 850, 851, 858, 934, 1162
BceAI ACGGC 4 cut(s) 313, 524, 571, 1040
BciT130I CCWGG 4 cut(s) 10, 668, 966, 1082
BcnI CCSGG 3 cut(s) 144, 590, 972
BcoDI GTCTC 2 cut(s) 1007, 1015
BfaI CTAG 2 cut(s) 716, 1017
BfoI RGCGCY 4 cut(s) 240, 527, 605, 1088
BglI GCCNNNNNGGC 2 cut(s) 500, 599
BlpI GCTNAGC 3 cut(s) 301, 875, 1100
Bme1390I CCNGG 7 cut(s) 10, 144, 590, 668, 966, 972, 1082
Bme18I GGWCC 4 cut(s) 6, 369, 583, 968
BmeT110I CYCGRG 1 cut(s) 951
BmgBI CACGTC 2 cut(s) 171, 798
BmgT120I GGNCC 6 cut(s) 6, 369, 583, 591, 968, 1053
BmiI GGNNCC 5 cut(s) 177, 481, 568, 848, 1054
BmrFI CCNGG 7 cut(s) 10, 144, 590, 668, 966, 972, 1082
BmsI GCATC 1 cut(s) 922
BplI GAGNNNNNCTC 2 cut(s) 471, 503
BpmI CTGGAG 2 cut(s) 300, 650
Bpu1102I GCTNAGC 3 cut(s) 301, 875, 1100
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 3 cut(s) 144, 590, 972
BsaAI YACGTR 2 cut(s) 734, 994
BsaHI GRCGYC 1 cut(s) 408
BsaJI CCNNGG 4 cut(s) 9, 327, 420, 495
BsaXI ACNNNNNCTCC 8 cut(s) 33, 48, 63, 78, 160, 190, 787, 817
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 366, 931, 971, 1131
Bse118I RCCGGY 3 cut(s) 253, 410, 520
Bse1I ACTGG 3 cut(s) 317, 371, 787
BseBI CCWGG 4 cut(s) 10, 668, 966, 1082
BseDI CCNNGG 4 cut(s) 9, 327, 420, 495
BseGI GGATG 5 cut(s) 826, 832, 913, 1004, 1147
BseLI CCNNNNNNNGG 5 cut(s) 35, 366, 931, 971, 1131
BseMII CTCAG 5 cut(s) 247, 635, 889, 1002, 1104
BseNI ACTGG 3 cut(s) 317, 371, 787
BsePI GCGCGC 1 cut(s) 609
BseRI GAGGAG 4 cut(s) 57, 117, 200, 1160
BseSI GKGCMC 2 cut(s) 149, 660
BseX3I CGGCCG 1 cut(s) 255
BseXI GCAGC 7 cut(s) 570, 828, 850, 851, 858, 934, 1162
BsgI GTGCAG 1 cut(s) 740
Bsh1236I CGCG 7 cut(s) 518, 611, 613, 641, 743, 1074, 1076
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 8 cut(s) 257, 494, 593, 630, 725, 1009, 1055, 1202
BshNI GGYRCC 1 cut(s) 846
BsiEI CGRYCG 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 951
BslFI GGGAC 2 cut(s) 761, 968
BslI CCNNNNNNNGG 5 cut(s) 35, 366, 931, 971, 1131
BsmAI GTCTC 2 cut(s) 1007, 1015
BsmFI GGGAC 2 cut(s) 761, 968
BsnI GGCC 8 cut(s) 257, 494, 593, 630, 725, 1009, 1055, 1202
BsoBI CYCGRG 1 cut(s) 951
Bsp1286I GDGCHC 3 cut(s) 149, 324, 660
Bsp143I GATC 1 cut(s) 852
Bsp1720I GCTNAGC 3 cut(s) 301, 875, 1100
BspANI GGCC 8 cut(s) 257, 494, 593, 630, 725, 1009, 1055, 1202
BspCNI CTCAG 5 cut(s) 246, 636, 888, 1003, 1105
BspFNI CGCG 7 cut(s) 518, 611, 613, 641, 743, 1074, 1076
BspLI GGNNCC 5 cut(s) 177, 481, 568, 848, 1054
BspT107I GGYRCC 1 cut(s) 846
BsrBI CCGCTC 2 cut(s) 109, 1132
BsrFI RCCGGY 3 cut(s) 253, 410, 520
BsrI ACTGG 3 cut(s) 317, 371, 787
BssAI RCCGGY 3 cut(s) 253, 410, 520
BssECI CCNNGG 4 cut(s) 9, 327, 420, 495
BssHII GCGCGC 1 cut(s) 609
BssMI GATC 1 cut(s) 852
BssNI GRCGYC 1 cut(s) 408
BssSI CACGAG 1 cut(s) 1025
BssT1I CCWWGG 2 cut(s) 327, 495
Bst2BI CACGAG 1 cut(s) 1025
Bst2UI CCWGG 4 cut(s) 10, 668, 966, 1082
Bst4CI ACNGT 6 cut(s) 34, 115, 674, 711, 959, 1067
Bst6I CTCTTC 1 cut(s) 74
BstACI GRCGYC 1 cut(s) 408
BstBAI YACGTR 2 cut(s) 734, 994
BstDEI CTNAG 7 cut(s) 233, 301, 644, 875, 1011, 1100, 1113
BstF5I GGATG 5 cut(s) 826, 832, 913, 1004, 1147
BstFNI CGCG 7 cut(s) 518, 611, 613, 641, 743, 1074, 1076
BstH2I RGCGCY 4 cut(s) 240, 527, 605, 1088
BstKTI GATC 1 cut(s) 855
BstMAI GTCTC 2 cut(s) 1007, 1015
BstMBI GATC 1 cut(s) 852
BstMCI CGRYCG 1 cut(s) 258
BstNI CCWGG 4 cut(s) 10, 668, 966, 1082
BstNSI RCATGY 1 cut(s) 285
BstSCI CCNGG 7 cut(s) 8, 142, 588, 666, 964, 970, 1080
BstSLI GKGCMC 2 cut(s) 149, 660
BstUI CGCG 7 cut(s) 518, 611, 613, 641, 743, 1074, 1076
BstV1I GCAGC 7 cut(s) 570, 828, 850, 851, 858, 934, 1162
BstZI CGGCCG 1 cut(s) 255
BsuRI GGCC 8 cut(s) 257, 494, 593, 630, 725, 1009, 1055, 1202
BtrI CACGTC 2 cut(s) 171, 798
BtsCI GGATG 5 cut(s) 826, 832, 913, 1004, 1147
BtsI GCAGTG 1 cut(s) 658
BtsIMutI CAGTG 2 cut(s) 324, 658
CaiI CAGNNNCTG 1 cut(s) 793
Cfr10I RCCGGY 3 cut(s) 253, 410, 520
Cfr13I GGNCC 6 cut(s) 6, 369, 583, 591, 968, 1053
CseI GACGC 4 cut(s) 200, 416, 647, 674
Csp6I GTAC 1 cut(s) 1119
CviAII CATG 4 cut(s) 282, 442, 490, 781
CviQI GTAC 1 cut(s) 1119
DdeI CTNAG 7 cut(s) 233, 301, 644, 875, 1011, 1100, 1113
DpnI GATC 1 cut(s) 854
DpnII GATC 1 cut(s) 852
DrdI GACNNNNNNGTC 1 cut(s) 169
DseDI GACNNNNNNGTC 1 cut(s) 169
EaeI YGGCCR 4 cut(s) 255, 492, 628, 1200
EagI CGGCCG 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 2 cut(s) 54, 69
EclXI CGGCCG 1 cut(s) 255
Eco130I CCWWGG 2 cut(s) 327, 495
Eco147I AGGCCT 1 cut(s) 1009
Eco47I GGWCC 4 cut(s) 6, 369, 583, 968
Eco52I CGGCCG 1 cut(s) 255
Eco72I CACGTG 2 cut(s) 734, 994
Eco88I CYCGRG 1 cut(s) 951
EcoO109I RGGNCCY 1 cut(s) 583
EcoRI GAATTC 1 cut(s) 92
EcoRII CCWGG 4 cut(s) 8, 666, 964, 1080
EcoT14I CCWWGG 2 cut(s) 327, 495
ErhI CCWWGG 2 cut(s) 327, 495
FaeI CATG 4 cut(s) 285, 445, 493, 784
FaiI YATR 8 cut(s) 283, 443, 491, 607, 695, 782, 1048, 1199
FaqI GGGAC 2 cut(s) 761, 968
FatI CATG 4 cut(s) 281, 441, 489, 780
FauI CCCGC 3 cut(s) 825, 876, 907
FokI GGATG 5 cut(s) 813, 819, 900, 1011, 1154
FspBI CTAG 2 cut(s) 716, 1017
GsuI CTGGAG 2 cut(s) 300, 650
HaeII RGCGCY 4 cut(s) 240, 527, 605, 1088
HaeIII GGCC 8 cut(s) 257, 494, 593, 630, 725, 1009, 1055, 1202
HgaI GACGC 4 cut(s) 200, 416, 647, 674
Hin1I GRCGYC 1 cut(s) 408
Hin1II CATG 4 cut(s) 285, 445, 493, 784
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 9 cut(s) 45, 135, 182, 374, 387, 445, 544, 774, 802
HphI GGTGA 5 cut(s) 71, 374, 806, 1163, 1199
Hpy166II GTNNAC 4 cut(s) 737, 801, 1070, 1119
Hpy188I TCNGA 5 cut(s) 30, 75, 339, 373, 690
Hpy188III TCNNGA 6 cut(s) 179, 226, 274, 352, 771, 953
Hpy8I GTNNAC 4 cut(s) 737, 801, 1070, 1119
HpyAV CCTTC 2 cut(s) 82, 695
HpyCH4III ACNGT 6 cut(s) 34, 115, 674, 711, 959, 1067
HpyCH4IV ACGT 8 cut(s) 170, 270, 344, 733, 797, 894, 993, 1194
HpyCH4V TGCA 5 cut(s) 285, 463, 721, 891, 913
HpyF3I CTNAG 7 cut(s) 233, 301, 644, 875, 1011, 1100, 1113
HpySE526I ACGT 8 cut(s) 170, 270, 344, 733, 797, 894, 993, 1194
Hsp92I GRCGYC 1 cut(s) 408
Hsp92II CATG 4 cut(s) 285, 445, 493, 784
KroI GCCGGC 3 cut(s) 253, 410, 520
KroNI GCCGGC 3 cut(s) 255, 412, 522
Kzo9I GATC 1 cut(s) 852
LmnI GCTCC 4 cut(s) 181, 479, 572, 1172
Lsp1109I GCAGC 7 cut(s) 570, 828, 850, 851, 858, 934, 1162
LweI GCATC 1 cut(s) 922
MaeI CTAG 2 cut(s) 716, 1017
MaeII ACGT 8 cut(s) 170, 270, 344, 733, 797, 894, 993, 1194
MaeIII GTNAC 2 cut(s) 674, 789
MalI GATC 1 cut(s) 854
MbiI CCGCTC 2 cut(s) 109, 1132
MboI GATC 1 cut(s) 852
MboII GAAGA 2 cut(s) 91, 97
MhlI GDGCHC 3 cut(s) 149, 324, 660
MlsI TGGCCA 1 cut(s) 494
MluCI AATT 2 cut(s) 92, 1060
MluNI TGGCCA 1 cut(s) 494
MlyI GAGTC 4 cut(s) 54, 383, 783, 796
MmeI TCCRAC 1 cut(s) 53
Mox20I TGGCCA 1 cut(s) 494
MreI CGCCGGCG 1 cut(s) 520
MroNI GCCGGC 3 cut(s) 253, 410, 520
MroXI GAANNNNTTC 2 cut(s) 92, 134
MscI TGGCCA 1 cut(s) 494
MseI TTAA 1 cut(s) 1210
MslI CAYNNNNRTG 1 cut(s) 1075
Msp20I TGGCCA 1 cut(s) 494
MspA1I CMGCKG 3 cut(s) 561, 841, 871
MspR9I CCNGG 7 cut(s) 10, 144, 590, 668, 966, 972, 1082
MvaI CCWGG 4 cut(s) 10, 668, 966, 1082
MvnI CGCG 7 cut(s) 518, 611, 613, 641, 743, 1074, 1076
NaeI GCCGGC 3 cut(s) 255, 412, 522
NciI CCSGG 3 cut(s) 144, 590, 972
NdeII GATC 1 cut(s) 852
NgoMIV GCCGGC 3 cut(s) 253, 410, 520
NlaIII CATG 4 cut(s) 285, 445, 493, 784
NlaIV GGNNCC 5 cut(s) 177, 481, 568, 848, 1054
NmeAIII GCCGAG 1 cut(s) 606
NspI RCATGY 1 cut(s) 285
OliI CACNNNNGTG 1 cut(s) 1075
PauI GCGCGC 1 cut(s) 609
PceI AGGCCT 1 cut(s) 1009
PcsI WCGNNNNNNNCGW 7 cut(s) 146, 155, 158, 161, 167, 633, 1200
PdiI GCCGGC 3 cut(s) 255, 412, 522
PdmI GAANNNNTTC 2 cut(s) 92, 134
PfeI GAWTC 5 cut(s) 135, 182, 387, 445, 544
PflFI GACNNNGTC 1 cut(s) 169
PflMI CCANNNNNTGG 1 cut(s) 366
PfoI TCCNGGA 1 cut(s) 666
PleI GAGTC 4 cut(s) 53, 382, 782, 796
PmaCI CACGTG 2 cut(s) 734, 994
PmlI CACGTG 2 cut(s) 734, 994
PpsI GAGTC 4 cut(s) 53, 382, 782, 796
Ppu21I YACGTR 2 cut(s) 734, 994
PpuMI RGGWCCY 1 cut(s) 583
Psp1406I AACGTT 2 cut(s) 344, 894
Psp5II RGGWCCY 1 cut(s) 583
Psp6I CCWGG 4 cut(s) 8, 666, 964, 1080
PspCI CACGTG 2 cut(s) 734, 994
PspGI CCWGG 4 cut(s) 8, 666, 964, 1080
PspN4I GGNNCC 5 cut(s) 177, 481, 568, 848, 1054
PspPI GGNCC 6 cut(s) 6, 369, 583, 591, 968, 1053
PspPPI RGGWCCY 1 cut(s) 583
PstNI CAGNNNCTG 1 cut(s) 793
PsyI GACNNNGTC 1 cut(s) 169
PteI GCGCGC 1 cut(s) 609
PvuII CAGCTG 1 cut(s) 841
RsaI GTAC 1 cut(s) 1120
RsaNI GTAC 1 cut(s) 1119
RseI CAYNNNNRTG 1 cut(s) 1075
SaqAI TTAA 1 cut(s) 1210
Sau3AI GATC 1 cut(s) 852
Sau96I GGNCC 6 cut(s) 6, 369, 583, 591, 968, 1053
SchI GAGTC 4 cut(s) 54, 383, 783, 796
ScrFI CCNGG 7 cut(s) 10, 144, 590, 668, 966, 972, 1082
SduI GDGCHC 3 cut(s) 149, 324, 660
SfaNI GCATC 1 cut(s) 922
SgrAI CRCCGGYG 1 cut(s) 520
SinI GGWCC 4 cut(s) 6, 369, 583, 968
SmiMI CAYNNNNRTG 1 cut(s) 1075
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 2 cut(s) 92, 1060
SseBI AGGCCT 1 cut(s) 1009
SspMI CTAG 2 cut(s) 716, 1017
StuI AGGCCT 1 cut(s) 1009
StyD4I CCNGG 7 cut(s) 8, 142, 588, 666, 964, 970, 1080
StyI CCWWGG 2 cut(s) 327, 495
TaaI ACNGT 6 cut(s) 34, 115, 674, 711, 959, 1067
TaiI ACGT 8 cut(s) 173, 273, 347, 736, 800, 897, 996, 1197
TaqI TCGA 3 cut(s) 189, 227, 636
TasI AATT 2 cut(s) 92, 1060
TatI WGTACW 1 cut(s) 1118
TauI GCSGC 6 cut(s) 18, 503, 620, 746, 764, 847
TfiI GAWTC 5 cut(s) 135, 182, 387, 445, 544
Tru1I TTAA 1 cut(s) 1210
Tru9I TTAA 1 cut(s) 1210
TscAI CASTG 2 cut(s) 324, 665
TseI GCWGC 7 cut(s) 558, 838, 841, 864, 871, 947, 1175
TspDTI ATGAA 1 cut(s) 253
TspGWI ACGGA 3 cut(s) 693, 713, 1185
TspRI CASTG 2 cut(s) 324, 665
Tth111I GACNNNGTC 1 cut(s) 169
Van91I CCANNNNNTGG 1 cut(s) 366
VpaK11BI GGWCC 4 cut(s) 6, 369, 583, 968
XapI RAATTY 1 cut(s) 92
XceI RCATGY 1 cut(s) 285
XmnI GAANNNNTTC 2 cut(s) 92, 134
XspI CTAG 2 cut(s) 716, 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.