MD14G1157000.v1.1

f-box protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
25115806 .. 25117344
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1157000.v1.1.491

Sequence Viewer

Length: 1065 bp
ATGGAGGCGGCGACGCTGCAAAGAAAAAAGCTCAGAAGCTCCCGCCGATCAACCGCAGCCGCGAAGTCGGATTTCTTCGACGGCCTGCCCGACGATCTCGTTGTCTTCGTCCTCTGCAAGCTCAGCTCCTCCGCTTCCTCGCCGTCCGATCTTATCAACGTCCTCCTCACGTGTAAGAGATTGAACCGGTTAGGACTCCACTCTCTGGTATTATCAAAGGCCGGTCCAAAAACATTTGCAATCCGGGCCAAGAACTGGTCCGATTCTGCCCACCGGTTTTTCAAACAGTGCGTCACCGCCGGTAACATCGAAGCTTCCTACACTCTCGGAATGATCCGATTTTACTGTTTACAAAACCGAGGGAGCGGGGTGTCGCTCATGGCGAAAGCCGCCATGAGAGCCCACGCGCCGGCGCTGTACTCGCTCGCCGTGATTCAGTTTAACGGCAGCGGCTACTCCAAGAATGATAAGGACCTGCGCGCTGGCGTGGCTCTCTGCGCTCGAGCCGCTTCCCTCGGCCACGTCGACGGGCTTCGCGAGCTCGGCCATTGCCTCCAGGACGGTTACGGAGTCAAGCAGAACGTCACCGAGGGACGCCGCTTGCTTGTCCAGGCCAACGCGCGGGAGCTCGCGTCCGTTCTACGCTCCTCCGCGGCGTGGCGGTCCCACCATTACCAGCACTTCTACGCCTGCCTGACGGGTCTGGTCAGCTGCCCGCTGCTGAGCGACTTCGGGTGCAACGTCCCGCCTCCGGAGCTCCACCCGGCGAACCGGTTTATGAGGGAGTGGTTCGGGTCGGGGCGGTGGATGGCGGGGCAGGGAATGAGGCTGTGCTCGCACGTGGGGTGCGGGCGGCCCGAGACGAGGCCGCACGAGTTTAGGAGGTGCTCGGTTTGCGGGACGGTGAATTATTGCTCGCGTGGGTGTCAAGCGCTGGATTGGAAGCTGCGACACAAAGTCAAGTGTAAGCCGATCGAACGGCGGCTGGCGGTTGACGGTGAGGCAGTGGAGGAGTTGGGGGGACTGGTGGAGGGTGAAGAAGGTGACAATGTGGCCGTTGGTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

355

Amino Acids

38.79

Weight (kDa)

9.43

Isoelectric Point (pI)

50.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_27 PF23310 86 - 155 3.1e-13 Plant tetratrico peptide repeats
zf-MYND PF01753 283 - 322 8.3e-08 MYND finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 483
AccB7I CCANNNNNTGG 2 cut(s) 205, 255
AccBSI CCGCTC 1 cut(s) 366
AccI GTMKAC 1 cut(s) 525
AccII CGCG 9 cut(s) 62, 407, 480, 537, 620, 622, 632, 653, 919
AccIII TCCGGA 1 cut(s) 751
AclWI GGATC 1 cut(s) 328
AcoI YGGCCR 3 cut(s) 517, 544, 1053
AcvI CACGTG 2 cut(s) 171, 841
AcyI GRCGYC 1 cut(s) 595
AfaI GTAC 1 cut(s) 419
AfeI AGCGCT 1 cut(s) 933
AfiI CCNNNNNNNGG 7 cut(s) 205, 255, 409, 621, 657, 751, 864
AflIII ACRYGT 1 cut(s) 170
AgeI ACCGGT 3 cut(s) 186, 273, 771
AgsI TTSAA 2 cut(s) 184, 283
AhdI GACNNNNNGTC 1 cut(s) 956
AjiI CACGTC 1 cut(s) 523
AjnI CCWGG 2 cut(s) 555, 609
Alw21I GWGCWC 5 cut(s) 543, 630, 759, 836, 890
Alw26I GTCTC 1 cut(s) 854
AlwI GGATC 1 cut(s) 328
Ama87I CYCGRG 2 cut(s) 501, 857
Aor13HI TCCGGA 1 cut(s) 751
Aor51HI AGCGCT 1 cut(s) 933
AoxI GGCC 9 cut(s) 82, 219, 246, 517, 544, 612, 854, 866, 1053
ApeKI GCWGC 6 cut(s) 16, 56, 447, 711, 718, 946
ArsI GACNNNNNNTTYG 2 cut(s) 276, 308
AsiGI ACCGGT 3 cut(s) 186, 273, 771
AspLEI GCGC 7 cut(s) 409, 415, 480, 482, 500, 622, 934
AspS9I GGNCC 6 cut(s) 224, 246, 258, 472, 663, 855
AsuC2I CCSGG 2 cut(s) 245, 764
AsuHPI GGTGA 6 cut(s) 286, 577, 916, 1010, 1046, 1055
AvaI CYCGRG 2 cut(s) 501, 857
AvaII GGWCC 4 cut(s) 224, 258, 472, 663
BanII GRGCYC 4 cut(s) 403, 543, 630, 759
BauI CACGAG 1 cut(s) 872
BbrPI CACGTG 2 cut(s) 171, 841
BbsI GAAGAC 1 cut(s) 97
Bbv12I GWGCWC 5 cut(s) 543, 630, 759, 836, 890
BbvI GCAGC 6 cut(s) 3, 68, 459, 698, 705, 933
BccI CCATC 1 cut(s) 802
BceAI ACGGC 6 cut(s) 97, 127, 413, 460, 995, 1040
BciT130I CCWGG 2 cut(s) 557, 611
BcnI CCSGG 2 cut(s) 245, 764
BcoDI GTCTC 1 cut(s) 854
BfoI RGCGCY 2 cut(s) 416, 935
BfuAI ACCTGC 1 cut(s) 483
BlpI GCTNAGC 2 cut(s) 122, 722
Bme1390I CCNGG 4 cut(s) 245, 557, 611, 764
Bme18I GGWCC 4 cut(s) 224, 258, 472, 663
BmeRI GACNNNNNGTC 1 cut(s) 956
BmeT110I CYCGRG 2 cut(s) 501, 857
BmgBI CACGTC 1 cut(s) 523
BmgT120I GGNCC 6 cut(s) 224, 246, 258, 472, 663, 855
BmiI GGNNCC 1 cut(s) 665
BmrFI CCNGG 4 cut(s) 245, 557, 611, 764
BpiI GAAGAC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 539
Bpu1102I GCTNAGC 2 cut(s) 122, 722
BpuMI CCSGG 2 cut(s) 245, 764
BsaAI YACGTR 2 cut(s) 171, 841
BsaHI GRCGYC 1 cut(s) 595
BsaJI CCNNGG 4 cut(s) 358, 514, 588, 651
BsaWI WCCGGW 4 cut(s) 186, 273, 751, 771
BsaXI ACNNNNNCTCC 2 cut(s) 617, 647
Bsc4I CCNNNNNNNGG 7 cut(s) 205, 255, 409, 621, 657, 751, 864
Bse118I RCCGGY 6 cut(s) 186, 221, 273, 299, 409, 771
Bse1I ACTGG 2 cut(s) 260, 1029
Bse3DI GCAATG 1 cut(s) 547
BseAI TCCGGA 1 cut(s) 751
BseBI CCWGG 2 cut(s) 557, 611
BseDI CCNNGG 4 cut(s) 358, 514, 588, 651
BseGI GGATG 1 cut(s) 813
BseLI CCNNNNNNNGG 7 cut(s) 205, 255, 409, 621, 657, 751, 864
BseMI GCAATG 1 cut(s) 547
BseMII CTCAG 3 cut(s) 46, 136, 713
BseNI ACTGG 2 cut(s) 260, 1029
BsePI GCGCGC 1 cut(s) 478
BseRI GAGGAG 4 cut(s) 118, 155, 637, 1025
BseXI GCAGC 6 cut(s) 3, 68, 459, 698, 705, 933
Bsh1236I CGCG 9 cut(s) 62, 407, 480, 537, 620, 622, 632, 653, 919
Bsh1285I CGRYCG 1 cut(s) 975
BshFI GGCC 9 cut(s) 84, 221, 248, 519, 546, 614, 856, 868, 1055
BshTI ACCGGT 3 cut(s) 186, 273, 771
BsiEI CGRYCG 1 cut(s) 975
BsiHKAI GWGCWC 5 cut(s) 543, 630, 759, 836, 890
BsiHKCI CYCGRG 2 cut(s) 501, 857
BsiSI CCGG 9 cut(s) 187, 222, 244, 274, 300, 410, 752, 764, 772
BslFI GGGAC 5 cut(s) 606, 649, 728, 913, 1035
BslI CCNNNNNNNGG 7 cut(s) 205, 255, 409, 621, 657, 751, 864
BsmAI GTCTC 1 cut(s) 854
BsmBI CGTCTC 1 cut(s) 854
BsmFI GGGAC 5 cut(s) 606, 649, 728, 913, 1035
BsnI GGCC 9 cut(s) 84, 221, 248, 519, 546, 614, 856, 868, 1055
BsoBI CYCGRG 2 cut(s) 501, 857
Bsp1286I GDGCHC 6 cut(s) 403, 543, 630, 759, 836, 890
Bsp13I TCCGGA 1 cut(s) 751
Bsp143I GATC 5 cut(s) 47, 94, 148, 333, 972
Bsp1720I GCTNAGC 2 cut(s) 122, 722
Bsp68I TCGCGA 1 cut(s) 537
BspANI GGCC 9 cut(s) 84, 221, 248, 519, 546, 614, 856, 868, 1055
BspCNI CTCAG 3 cut(s) 45, 135, 714
BspEI TCCGGA 1 cut(s) 751
BspFNI CGCG 9 cut(s) 62, 407, 480, 537, 620, 622, 632, 653, 919
BspLI GGNNCC 1 cut(s) 665
BspMI ACCTGC 1 cut(s) 483
BspPI GGATC 1 cut(s) 328
BsrBI CCGCTC 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 547
BsrFI RCCGGY 6 cut(s) 186, 221, 273, 299, 409, 771
BsrI ACTGG 2 cut(s) 260, 1029
BssAI RCCGGY 6 cut(s) 186, 221, 273, 299, 409, 771
BssECI CCNNGG 4 cut(s) 358, 514, 588, 651
BssHII GCGCGC 1 cut(s) 478
BssMI GATC 5 cut(s) 47, 94, 148, 333, 972
BssNI GRCGYC 1 cut(s) 595
BssSI CACGAG 1 cut(s) 872
Bst2BI CACGAG 1 cut(s) 872
Bst2UI CCWGG 2 cut(s) 557, 611
Bst4CI ACNGT 5 cut(s) 288, 347, 563, 904, 998
BstACI GRCGYC 1 cut(s) 595
BstBAI YACGTR 2 cut(s) 171, 841
BstDEI CTNAG 3 cut(s) 32, 122, 722
BstDSI CCRYGG 1 cut(s) 651
BstF5I GGATG 1 cut(s) 813
BstFNI CGCG 9 cut(s) 62, 407, 480, 537, 620, 622, 632, 653, 919
BstH2I RGCGCY 2 cut(s) 416, 935
BstHHI GCGC 7 cut(s) 409, 415, 480, 482, 500, 622, 934
BstKTI GATC 5 cut(s) 50, 97, 151, 336, 975
BstMAI GTCTC 1 cut(s) 854
BstMBI GATC 5 cut(s) 47, 94, 148, 333, 972
BstMCI CGRYCG 1 cut(s) 975
BstNI CCWGG 2 cut(s) 557, 611
BstSCI CCNGG 4 cut(s) 243, 555, 609, 762
BstUI CGCG 9 cut(s) 62, 407, 480, 537, 620, 622, 632, 653, 919
BstV1I GCAGC 6 cut(s) 3, 68, 459, 698, 705, 933
BstV2I GAAGAC 1 cut(s) 97
BsuRI GGCC 9 cut(s) 84, 221, 248, 519, 546, 614, 856, 868, 1055
BtgI CCRYGG 1 cut(s) 651
BtrI CACGTC 1 cut(s) 523
BtsCI GGATG 1 cut(s) 813
BtsI GCAGTG 1 cut(s) 1011
BtsIMutI CAGTG 2 cut(s) 293, 1011
BtuMI TCGCGA 1 cut(s) 537
BveI ACCTGC 1 cut(s) 483
CfoI GCGC 7 cut(s) 409, 415, 480, 482, 500, 622, 934
Cfr10I RCCGGY 6 cut(s) 186, 221, 273, 299, 409, 771
Cfr13I GGNCC 6 cut(s) 224, 246, 258, 472, 663, 855
Cfr42I CCGCGG 1 cut(s) 654
CseI GACGC 4 cut(s) 22, 280, 603, 621
Csp6I GTAC 1 cut(s) 418
CspAI ACCGGT 3 cut(s) 186, 273, 771
CviAII CATG 2 cut(s) 379, 394
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 3 cut(s) 32, 122, 722
DpnI GATC 5 cut(s) 49, 96, 150, 335, 974
DpnII GATC 5 cut(s) 47, 94, 148, 333, 972
DriI GACNNNNNGTC 1 cut(s) 956
EaeI YGGCCR 3 cut(s) 517, 544, 1053
Eam1105I GACNNNNNGTC 1 cut(s) 956
Ecl136II GAGCTC 3 cut(s) 541, 628, 757
Eco24I GRGCYC 4 cut(s) 403, 543, 630, 759
Eco47I GGWCC 4 cut(s) 224, 258, 472, 663
Eco47III AGCGCT 1 cut(s) 933
Eco53kI GAGCTC 3 cut(s) 541, 628, 757
Eco72I CACGTG 2 cut(s) 171, 841
Eco88I CYCGRG 2 cut(s) 501, 857
EcoICRI GAGCTC 3 cut(s) 541, 628, 757
EcoO109I RGGNCCY 1 cut(s) 472
EcoRII CCWGG 2 cut(s) 555, 609
EcoT38I GRGCYC 4 cut(s) 403, 543, 630, 759
Esp3I CGTCTC 1 cut(s) 854
FaeI CATG 2 cut(s) 382, 397
FaiI YATR 3 cut(s) 380, 395, 779
FaqI GGGAC 5 cut(s) 606, 649, 728, 913, 1035
FatI CATG 2 cut(s) 378, 393
FauI CCCGC 8 cut(s) 50, 359, 615, 723, 753, 805, 842, 890
FblI GTMKAC 1 cut(s) 525
FokI GGATG 1 cut(s) 820
FriOI GRGCYC 4 cut(s) 403, 543, 630, 759
GlaI GCGC 7 cut(s) 408, 414, 479, 481, 499, 621, 933
GsuI CTGGAG 1 cut(s) 539
HaeII RGCGCY 2 cut(s) 416, 935
HaeIII GGCC 9 cut(s) 84, 221, 248, 519, 546, 614, 856, 868, 1055
HapII CCGG 9 cut(s) 187, 222, 244, 274, 300, 410, 752, 764, 772
HgaI GACGC 4 cut(s) 22, 280, 603, 621
HhaI GCGC 7 cut(s) 409, 415, 480, 482, 500, 622, 934
Hin1I GRCGYC 1 cut(s) 595
Hin1II CATG 2 cut(s) 382, 397
Hin6I GCGC 7 cut(s) 407, 413, 478, 480, 498, 620, 932
HinP1I GCGC 7 cut(s) 407, 413, 478, 480, 498, 620, 932
HincII GTYRAC 2 cut(s) 526, 994
HindII GTYRAC 2 cut(s) 526, 994
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 4 cut(s) 195, 263, 433, 570
HpaII CCGG 9 cut(s) 187, 222, 244, 274, 300, 410, 752, 764, 772
HphI GGTGA 6 cut(s) 286, 577, 916, 1010, 1046, 1055
Hpy166II GTNNAC 3 cut(s) 350, 526, 994
Hpy188I TCNGA 6 cut(s) 35, 70, 148, 262, 329, 338
Hpy188III TCNNGA 2 cut(s) 536, 752
Hpy8I GTNNAC 3 cut(s) 350, 526, 994
Hpy99I CGWCG 5 cut(s) 16, 83, 95, 527, 530
HpyAV CCTTC 1 cut(s) 1034
HpyCH4III ACNGT 5 cut(s) 288, 347, 563, 904, 998
HpyCH4IV ACGT 6 cut(s) 159, 170, 522, 582, 741, 840
HpyCH4V TGCA 4 cut(s) 19, 117, 239, 738
HpyF3I CTNAG 3 cut(s) 32, 122, 722
HpySE526I ACGT 6 cut(s) 159, 170, 522, 582, 741, 840
Hsp92I GRCGYC 1 cut(s) 595
Hsp92II CATG 2 cut(s) 382, 397
HspAI GCGC 7 cut(s) 407, 413, 478, 480, 498, 620, 932
Kpn2I TCCGGA 1 cut(s) 751
KroI GCCGGC 1 cut(s) 409
KroNI GCCGGC 1 cut(s) 411
KspI CCGCGG 1 cut(s) 654
Kzo9I GATC 5 cut(s) 47, 94, 148, 333, 972
LmnI GCTCC 7 cut(s) 44, 131, 363, 625, 650, 754, 762
Lsp1109I GCAGC 6 cut(s) 3, 68, 459, 698, 705, 933
MaeII ACGT 6 cut(s) 159, 170, 522, 582, 741, 840
MaeIII GTNAC 5 cut(s) 292, 302, 563, 583, 1043
MalI GATC 5 cut(s) 49, 96, 150, 335, 974
MbiI CCGCTC 1 cut(s) 366
MboI GATC 5 cut(s) 47, 94, 148, 333, 972
MboII GAAGA 3 cut(s) 67, 97, 1049
MhlI GDGCHC 6 cut(s) 403, 543, 630, 759, 836, 890
MluCI AATT 1 cut(s) 907
MlyI GAGTC 2 cut(s) 189, 579
MmeI TCCRAC 1 cut(s) 48
MreI CGCCGGCG 1 cut(s) 409
MroI TCCGGA 1 cut(s) 751
MroNI GCCGGC 1 cut(s) 409
MseI TTAA 2 cut(s) 441, 1063
MspA1I CMGCKG 4 cut(s) 450, 653, 711, 718
MspI CCGG 9 cut(s) 187, 222, 244, 274, 300, 410, 752, 764, 772
MspR9I CCNGG 4 cut(s) 245, 557, 611, 764
MvaI CCWGG 2 cut(s) 557, 611
MvnI CGCG 9 cut(s) 62, 407, 480, 537, 620, 622, 632, 653, 919
NaeI GCCGGC 1 cut(s) 411
NciI CCSGG 2 cut(s) 245, 764
NdeII GATC 5 cut(s) 47, 94, 148, 333, 972
NgoMIV GCCGGC 1 cut(s) 409
NlaIII CATG 2 cut(s) 382, 397
NlaIV GGNNCC 1 cut(s) 665
NmeAIII GCCGAG 2 cut(s) 495, 522
NmuCI GTSAC 3 cut(s) 292, 583, 1043
NruI TCGCGA 1 cut(s) 537
PaeR7I CTCGAG 1 cut(s) 501
PauI GCGCGC 1 cut(s) 478
PcsI WCGNNNNNNNCGW 6 cut(s) 87, 105, 380, 522, 534, 738
PdiI GCCGGC 1 cut(s) 411
PfeI GAWTC 2 cut(s) 263, 433
PflMI CCANNNNNTGG 2 cut(s) 205, 255
PfoI TCCNGGA 1 cut(s) 555
PinAI ACCGGT 3 cut(s) 186, 273, 771
Ple19I CGATCG 1 cut(s) 975
PleI GAGTC 2 cut(s) 189, 578
PmaCI CACGTG 2 cut(s) 171, 841
PmlI CACGTG 2 cut(s) 171, 841
PpsI GAGTC 2 cut(s) 189, 578
Ppu21I YACGTR 2 cut(s) 171, 841
PpuMI RGGWCCY 1 cut(s) 472
Psp124BI GAGCTC 3 cut(s) 543, 630, 759
Psp5II RGGWCCY 1 cut(s) 472
Psp6I CCWGG 2 cut(s) 555, 609
PspCI CACGTG 2 cut(s) 171, 841
PspGI CCWGG 2 cut(s) 555, 609
PspN4I GGNNCC 1 cut(s) 665
PspPI GGNCC 6 cut(s) 224, 246, 258, 472, 663, 855
PspPPI RGGWCCY 1 cut(s) 472
PspXI VCTCGAGB 1 cut(s) 501
PteI GCGCGC 1 cut(s) 478
PvuI CGATCG 1 cut(s) 975
PvuII CAGCTG 1 cut(s) 711
RruI TCGCGA 1 cut(s) 537
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
SacI GAGCTC 3 cut(s) 543, 630, 759
SacII CCGCGG 1 cut(s) 654
SalI GTCGAC 1 cut(s) 524
SaqAI TTAA 2 cut(s) 441, 1063
Sau3AI GATC 5 cut(s) 47, 94, 148, 333, 972
Sau96I GGNCC 6 cut(s) 224, 246, 258, 472, 663, 855
SchI GAGTC 2 cut(s) 189, 579
ScrFI CCNGG 4 cut(s) 245, 557, 611, 764
SduI GDGCHC 6 cut(s) 403, 543, 630, 759, 836, 890
Sfr274I CTCGAG 1 cut(s) 501
Sfr303I CCGCGG 1 cut(s) 654
SgrAI CRCCGGYG 1 cut(s) 409
SgrBI CCGCGG 1 cut(s) 654
SgrDI CGTCGACG 1 cut(s) 524
SinI GGWCC 4 cut(s) 224, 258, 472, 663
SlaI CTCGAG 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 501
SmoI CTYRAG 1 cut(s) 501
Sse9I AATT 1 cut(s) 907
SstI GAGCTC 3 cut(s) 543, 630, 759
StyD4I CCNGG 4 cut(s) 243, 555, 609, 762
TaaI ACNGT 5 cut(s) 288, 347, 563, 904, 998
TaiI ACGT 6 cut(s) 162, 173, 525, 585, 744, 843
TaqI TCGA 5 cut(s) 78, 309, 502, 525, 975
TasI AATT 1 cut(s) 907
TatI WGTACW 1 cut(s) 417
TfiI GAWTC 2 cut(s) 263, 433
Tru1I TTAA 2 cut(s) 441, 1063
Tru9I TTAA 2 cut(s) 441, 1063
TscAI CASTG 2 cut(s) 293, 1011
TseFI GTSAC 3 cut(s) 292, 583, 1043
TseI GCWGC 6 cut(s) 16, 56, 447, 711, 718, 946
Tsp45I GTSAC 3 cut(s) 292, 583, 1043
TspGWI ACGGA 2 cut(s) 582, 625
TspRI CASTG 2 cut(s) 293, 1011
Van91I CCANNNNNTGG 2 cut(s) 205, 255
VpaK11BI GGWCC 4 cut(s) 224, 258, 472, 663
XhoI CTCGAG 1 cut(s) 501
XmiI GTMKAC 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.