FvH4_5g08330

f-box protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
4847346 .. 4849190
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08330.t1

Sequence Viewer

Length: 1134 bp
ATGCAAAAACGAAACGCTCAACCCGACCCGGTAAAACAAACCCGAACGCCCGTACTGACTGTTCGGAAAGCATGTCAAGCCGGTGAGGAAGCCATGACGAACCGGAAAAGGCTCAGAACCTCTCGACGAACCGCCACCGCTGCCAAGTCGGATTTCTTCGACGACTTGCCTGACGATCTCGTCGTCTTCATCCTCTGCAAGCTCAGCTCCTCCGCGTCTTCTCCCTCCGATCTCATTAACGTCCTCATCACATGTAAGAGATTGAACCGGTACGGGCTTCACTCTCTGGTACTATCCAAAGCCGGTCCGGGAGCTTTTGCTATCAAGGCCAAGAACTGGTCCGACTCGGCTCACCGGTTTCTCAAGCTCTGCGTTAGCGCCGGTAACATCGAAGCTTGCTACACTCTCGGAATGATCCGATTTTACTGCTTACAAAACCGAGGCGGTGGCGCGTCGCTCATGGCCAAGGCGGCCATGCGATGCCACACGCGTGCGCTCTACTCGCTCGCCGTGATTCAGTTCAACGGCAGCGGCGGCTCCAAGAAAGAGAAGGACCTACGCGCCGGCGTGGCTCTCTGCGCACGCGCCGCCGGGCTCGGCCACATCGACGCGCTGCGCGAGCTCGGGCATTGCCTCCAGGACGGTTACGGCGTCCGCCAGAACGTCTCGGAGGGACGACGCCTCATAGTCCAGGCCAACGCGCGGGAGCTCGCGTCGGTTATAACCTCCGCCACGTGGCGGGCCCACCAGTACCAGCACTTCTACGCGTGCCTGACGGGGTTGGTTAGTTGCCCGCTGCTGAGCGACTTCGGGTGCAACGTTCCCGGGCCTGAGGTCCACCCGGCGAACCGGTTCATGAAGGAGTGGTTCGGGTCGGGTCGGAGGTTGGAGGGCGTTGGGCTGAGGATGTGCTCGCACGTGGGGTGCGGGAGGCCCGAGACGAGGCCGCACGAGTTTCGGAGGTGCTCGGTGTGTGGTACGGTCAATTATTGCTCGCGTGGTTGTCAAGCGCTGGATTGGAAGCTGAGGCACAAGGTTCAGTGTAAGCCGATTGAACGGTGGTTAGGGGTTGATGGCGGCGGCGCTGGTGAGGGTGTTGAAGGCGGAGAGGGTGAGAATATGGTGGTGGAATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

378

Amino Acids

41.21

Weight (kDa)

9.45

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_27 PF23310 113 - 185 2.5e-12 Plant tetratrico peptide repeats
zf-MYND PF01753 309 - 348 6.4e-08 MYND finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 722
AasI GACNNNNNNGTC 1 cut(s) 179
Acc16I TGCGCA 1 cut(s) 580
AccB7I CCANNNNNTGG 1 cut(s) 336
AclI AACGTT 1 cut(s) 819
AclWI GGATC 1 cut(s) 409
AcoI YGGCCR 3 cut(s) 462, 471, 598
AcvI CACGTG 2 cut(s) 735, 919
AcyI GRCGYC 2 cut(s) 651, 679
AfaI GTAC 5 cut(s) 54, 272, 291, 752, 979
AfeI AGCGCT 1 cut(s) 1011
AfiI CCNNNNNNNGG 5 cut(s) 336, 702, 735, 738, 942
AflIII ACRYGT 3 cut(s) 251, 488, 765
AgeI ACCGGT 3 cut(s) 267, 354, 849
AgsI TTSAA 4 cut(s) 265, 523, 1055, 1100
AjnI CCWGG 2 cut(s) 636, 690
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AleI CACNNNNGTG 1 cut(s) 489
AluBI AGCT 8 cut(s) 202, 207, 314, 367, 395, 622, 709, 1024
AluI AGCT 8 cut(s) 202, 207, 314, 367, 395, 622, 709, 1024
Alw21I GWGCWC 4 cut(s) 624, 711, 914, 968
Alw26I GTCTC 2 cut(s) 670, 932
AlwI GGATC 1 cut(s) 409
Ama87I CYCGRG 3 cut(s) 623, 824, 935
Aor51HI AGCGCT 1 cut(s) 1011
AoxI GGCC 9 cut(s) 327, 462, 471, 598, 693, 741, 827, 932, 944
ApaI GGGCCC 1 cut(s) 745
ApeKI GCWGC 4 cut(s) 140, 528, 613, 796
AsiGI ACCGGT 3 cut(s) 267, 354, 849
Asp700I GAANNNNTTC 1 cut(s) 851
AspS9I GGNCC 8 cut(s) 305, 339, 553, 741, 742, 827, 835, 933
AsuC2I CCSGG 6 cut(s) 29, 309, 592, 825, 826, 842
AsuHPI GGTGA 4 cut(s) 95, 344, 1100, 1124
AvaI CYCGRG 3 cut(s) 623, 824, 935
AvaII GGWCC 4 cut(s) 305, 339, 553, 835
AxyI CCTNAGG 1 cut(s) 831
BaeGI GKGCMC 1 cut(s) 745
BalI TGGCCA 1 cut(s) 464
BanII GRGCYC 4 cut(s) 597, 624, 711, 745
BarI GAAGNNNNNNTAC 2 cut(s) 743, 775
BauI CACGAG 1 cut(s) 950
BbrPI CACGTG 2 cut(s) 735, 919
BbsI GAAGAC 2 cut(s) 178, 210
Bbv12I GWGCWC 4 cut(s) 624, 711, 914, 968
BbvCI CCTCAGC 2 cut(s) 902, 1025
BbvI GCAGC 4 cut(s) 127, 540, 600, 783
BccI CCATC 1 cut(s) 1067
BceAI ACGGC 3 cut(s) 494, 541, 664
BcgI CGANNNNNNTGC 4 cut(s) 408, 442, 938, 972
BciT130I CCWGG 2 cut(s) 638, 692
BcnI CCSGG 6 cut(s) 29, 309, 592, 825, 826, 842
BcoDI GTCTC 2 cut(s) 670, 932
BfoI RGCGCY 3 cut(s) 381, 1013, 1086
BglI GCCNNNNNGGC 2 cut(s) 470, 569
BlpI GCTNAGC 2 cut(s) 203, 800
Bme1390I CCNGG 8 cut(s) 29, 309, 592, 638, 692, 825, 826, 842
Bme18I GGWCC 4 cut(s) 305, 339, 553, 835
BmeT110I CYCGRG 3 cut(s) 623, 824, 935
BmgT120I GGNCC 8 cut(s) 305, 339, 553, 741, 742, 827, 835, 933
BmiI GGNNCC 2 cut(s) 538, 743
BmrFI CCNGG 8 cut(s) 29, 309, 592, 638, 692, 825, 826, 842
BmsI GCATC 1 cut(s) 470
BpiI GAAGAC 2 cut(s) 178, 210
BpmI CTGGAG 1 cut(s) 620
Bpu10I CCTNAGC 2 cut(s) 902, 1025
Bpu1102I GCTNAGC 2 cut(s) 203, 800
BpuEI CTTGAG 1 cut(s) 347
BpuMI CCSGG 6 cut(s) 29, 309, 592, 825, 826, 842
BsaAI YACGTR 2 cut(s) 735, 919
BsaHI GRCGYC 2 cut(s) 651, 679
BsaJI CCNNGG 3 cut(s) 439, 465, 824
BsaWI WCCGGW 4 cut(s) 102, 267, 354, 849
BsaXI ACNNNNNCTCC 2 cut(s) 698, 728
Bsc4I CCNNNNNNNGG 5 cut(s) 336, 702, 735, 738, 942
Bse118I RCCGGY 7 cut(s) 80, 267, 302, 354, 380, 563, 849
Bse1I ACTGG 2 cut(s) 341, 748
Bse21I CCTNAGG 1 cut(s) 831
Bse3DI GCAATG 1 cut(s) 628
BseBI CCWGG 2 cut(s) 638, 692
BseDI CCNNGG 3 cut(s) 439, 465, 824
BseGI GGATG 2 cut(s) 189, 912
BseLI CCNNNNNNNGG 5 cut(s) 336, 702, 735, 738, 942
BseMI GCAATG 1 cut(s) 628
BseMII CTCAG 6 cut(s) 127, 217, 791, 822, 893, 1016
BseNI ACTGG 2 cut(s) 341, 748
BseRI GAGGAG 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 745
BseXI GCAGC 4 cut(s) 127, 540, 600, 783
BshFI GGCC 9 cut(s) 329, 464, 473, 600, 695, 743, 829, 934, 946
BshTI ACCGGT 3 cut(s) 267, 354, 849
BsiHKAI GWGCWC 4 cut(s) 624, 711, 914, 968
BsiHKCI CYCGRG 3 cut(s) 623, 824, 935
BslFI GGGAC 1 cut(s) 687
BslI CCNNNNNNNGG 5 cut(s) 336, 702, 735, 738, 942
BsmAI GTCTC 2 cut(s) 670, 932
BsmBI CGTCTC 2 cut(s) 670, 932
BsmFI GGGAC 1 cut(s) 687
BsnI GGCC 9 cut(s) 329, 464, 473, 600, 695, 743, 829, 934, 946
BsoBI CYCGRG 3 cut(s) 623, 824, 935
Bsp120I GGGCCC 1 cut(s) 741
Bsp1286I GDGCHC 6 cut(s) 597, 624, 711, 745, 914, 968
Bsp143I GATC 3 cut(s) 175, 229, 414
Bsp1720I GCTNAGC 2 cut(s) 203, 800
BspANI GGCC 9 cut(s) 329, 464, 473, 600, 695, 743, 829, 934, 946
BspCNI CTCAG 6 cut(s) 126, 216, 792, 823, 894, 1017
BspHI TCATGA 1 cut(s) 855
BspLI GGNNCC 2 cut(s) 538, 743
BspPI GGATC 1 cut(s) 409
BsrDI GCAATG 1 cut(s) 628
BsrFI RCCGGY 7 cut(s) 80, 267, 302, 354, 380, 563, 849
BsrI ACTGG 2 cut(s) 341, 748
BssAI RCCGGY 7 cut(s) 80, 267, 302, 354, 380, 563, 849
BssECI CCNNGG 3 cut(s) 439, 465, 824
BssMI GATC 3 cut(s) 175, 229, 414
BssNI GRCGYC 2 cut(s) 651, 679
BssSI CACGAG 1 cut(s) 950
BssT1I CCWWGG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 950
Bst2UI CCWGG 2 cut(s) 638, 692
Bst4CI ACNGT 4 cut(s) 61, 644, 982, 1059
BstACI GRCGYC 2 cut(s) 651, 679
BstBAI YACGTR 2 cut(s) 735, 919
BstDEI CTNAG 6 cut(s) 113, 203, 800, 831, 902, 1025
BstF5I GGATG 2 cut(s) 189, 912
BstH2I RGCGCY 3 cut(s) 381, 1013, 1086
BstKTI GATC 3 cut(s) 178, 232, 417
BstMAI GTCTC 2 cut(s) 670, 932
BstMBI GATC 3 cut(s) 175, 229, 414
BstNI CCWGG 2 cut(s) 638, 692
BstNSI RCATGY 2 cut(s) 75, 255
BstSCI CCNGG 8 cut(s) 27, 307, 590, 636, 690, 823, 824, 840
BstSLI GKGCMC 1 cut(s) 745
BstV1I GCAGC 4 cut(s) 127, 540, 600, 783
BstV2I GAAGAC 2 cut(s) 178, 210
Bsu36I CCTNAGG 1 cut(s) 831
BsuRI GGCC 9 cut(s) 329, 464, 473, 600, 695, 743, 829, 934, 946
BtgZI GCGATG 1 cut(s) 493
BtsCI GGATG 2 cut(s) 189, 912
BtsIMutI CAGTG 1 cut(s) 1046
CciI TCATGA 1 cut(s) 855
Cfr10I RCCGGY 7 cut(s) 80, 267, 302, 354, 380, 563, 849
Cfr13I GGNCC 8 cut(s) 305, 339, 553, 741, 742, 827, 835, 933
Cfr9I CCCGGG 1 cut(s) 824
CpoI CGGWCCG 1 cut(s) 305
CseI GACGC 6 cut(s) 204, 441, 617, 640, 687, 702
Csp6I GTAC 5 cut(s) 53, 271, 290, 751, 978
CspAI ACCGGT 3 cut(s) 267, 354, 849
CspI CGGWCCG 1 cut(s) 305
CviAII CATG 6 cut(s) 72, 94, 252, 460, 475, 856
CviQI GTAC 5 cut(s) 53, 271, 290, 751, 978
DdeI CTNAG 6 cut(s) 113, 203, 800, 831, 902, 1025
DpnI GATC 3 cut(s) 177, 231, 416
DpnII GATC 3 cut(s) 175, 229, 414
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 3 cut(s) 462, 471, 598
EciI GGCGGA 3 cut(s) 644, 718, 1119
Ecl136II GAGCTC 2 cut(s) 622, 709
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 4 cut(s) 597, 624, 711, 745
Eco47I GGWCC 4 cut(s) 305, 339, 553, 835
Eco47III AGCGCT 1 cut(s) 1011
Eco53kI GAGCTC 2 cut(s) 622, 709
Eco72I CACGTG 2 cut(s) 735, 919
Eco81I CCTNAGG 1 cut(s) 831
Eco88I CYCGRG 3 cut(s) 623, 824, 935
EcoICRI GAGCTC 2 cut(s) 622, 709
EcoO109I RGGNCCY 1 cut(s) 553
EcoRII CCWGG 2 cut(s) 636, 690
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 4 cut(s) 597, 624, 711, 745
ErhI CCWWGG 1 cut(s) 465
Esp3I CGTCTC 2 cut(s) 670, 932
FaeI CATG 6 cut(s) 75, 97, 255, 463, 478, 859
FaiI YATR 9 cut(s) 73, 95, 253, 461, 476, 686, 722, 857, 1121
FaqI GGGAC 1 cut(s) 687
FatI CATG 6 cut(s) 71, 93, 251, 459, 474, 855
FauI CCCGC 4 cut(s) 696, 732, 801, 920
FokI GGATG 2 cut(s) 176, 919
FriOI GRGCYC 4 cut(s) 597, 624, 711, 745
FspI TGCGCA 1 cut(s) 580
GsuI CTGGAG 1 cut(s) 620
HaeII RGCGCY 3 cut(s) 381, 1013, 1086
HaeIII GGCC 9 cut(s) 329, 464, 473, 600, 695, 743, 829, 934, 946
HgaI GACGC 6 cut(s) 204, 441, 617, 640, 687, 702
Hin1I GRCGYC 2 cut(s) 651, 679
Hin1II CATG 6 cut(s) 75, 97, 255, 463, 478, 859
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 2 cut(s) 344, 514
HphI GGTGA 4 cut(s) 95, 344, 1100, 1124
Hpy166II GTNNAC 1 cut(s) 838
Hpy188III TCNNGA 2 cut(s) 123, 856
Hpy8I GTNNAC 1 cut(s) 838
Hpy99I CGWCG 7 cut(s) 129, 164, 185, 457, 611, 681, 718
HpyAV CCTTC 3 cut(s) 544, 853, 1094
HpyCH4III ACNGT 4 cut(s) 61, 644, 982, 1059
HpyCH4IV ACGT 5 cut(s) 240, 663, 734, 819, 918
HpyCH4V TGCA 3 cut(s) 4, 198, 816
HpyF3I CTNAG 6 cut(s) 113, 203, 800, 831, 902, 1025
HpySE526I ACGT 5 cut(s) 240, 663, 734, 819, 918
Hsp92I GRCGYC 2 cut(s) 651, 679
Hsp92II CATG 6 cut(s) 75, 97, 255, 463, 478, 859
KroI GCCGGC 1 cut(s) 563
KroNI GCCGGC 1 cut(s) 565
Kzo9I GATC 3 cut(s) 175, 229, 414
LmnI GCTCC 4 cut(s) 212, 311, 542, 706
Lsp1109I GCAGC 4 cut(s) 127, 540, 600, 783
LweI GCATC 1 cut(s) 470
MaeII ACGT 5 cut(s) 240, 663, 734, 819, 918
MaeIII GTNAC 2 cut(s) 383, 644
MalI GATC 3 cut(s) 177, 231, 416
MboI GATC 3 cut(s) 175, 229, 414
MboII GAAGA 3 cut(s) 148, 178, 210
MhlI GDGCHC 6 cut(s) 597, 624, 711, 745, 914, 968
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 1 cut(s) 985
MluI ACGCGT 2 cut(s) 488, 765
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 4 cut(s) 129, 366, 860, 867
Mox20I TGGCCA 1 cut(s) 464
MreI CGCCGGCG 1 cut(s) 563
MroNI GCCGGC 1 cut(s) 563
MroXI GAANNNNTTC 1 cut(s) 851
MscI TGGCCA 1 cut(s) 464
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 489
Msp20I TGGCCA 1 cut(s) 464
MspA1I CMGCKG 3 cut(s) 140, 531, 796
MspR9I CCNGG 8 cut(s) 29, 309, 592, 638, 692, 825, 826, 842
MteI GCGCNGCGC 1 cut(s) 614
MvaI CCWGG 2 cut(s) 638, 692
NaeI GCCGGC 1 cut(s) 565
NciI CCSGG 6 cut(s) 29, 309, 592, 825, 826, 842
NdeII GATC 3 cut(s) 175, 229, 414
NgoMIV GCCGGC 1 cut(s) 563
NlaIII CATG 6 cut(s) 75, 97, 255, 463, 478, 859
NlaIV GGNNCC 2 cut(s) 538, 743
NmeAIII GCCGAG 2 cut(s) 326, 576
NsbI TGCGCA 1 cut(s) 580
NspI RCATGY 2 cut(s) 75, 255
OliI CACNNNNGTG 1 cut(s) 489
PagI TCATGA 1 cut(s) 855
PciI ACATGT 1 cut(s) 251
PcsI WCGNNNNNNNCGW 6 cut(s) 21, 180, 603, 615, 648, 816
PdiI GCCGGC 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 851
PfeI GAWTC 1 cut(s) 514
PflMI CCANNNNNTGG 1 cut(s) 336
PfoI TCCNGGA 2 cut(s) 307, 636
PinAI ACCGGT 3 cut(s) 267, 354, 849
PleI GAGTC 1 cut(s) 338
PmaCI CACGTG 2 cut(s) 735, 919
PmlI CACGTG 2 cut(s) 735, 919
PpsI GAGTC 1 cut(s) 338
Ppu21I YACGTR 2 cut(s) 735, 919
PpuMI RGGWCCY 1 cut(s) 553
PscI ACATGT 1 cut(s) 251
PsiI TTATAA 1 cut(s) 722
Psp124BI GAGCTC 2 cut(s) 624, 711
Psp1406I AACGTT 1 cut(s) 819
Psp5II RGGWCCY 1 cut(s) 553
Psp6I CCWGG 2 cut(s) 636, 690
PspCI CACGTG 2 cut(s) 735, 919
PspGI CCWGG 2 cut(s) 636, 690
PspN4I GGNNCC 2 cut(s) 538, 743
PspOMI GGGCCC 1 cut(s) 741
PspPI GGNCC 8 cut(s) 305, 339, 553, 741, 742, 827, 835, 933
PspPPI RGGWCCY 1 cut(s) 553
PsrI GAACNNNNNNTAC 2 cut(s) 45, 77
RsaI GTAC 5 cut(s) 54, 272, 291, 752, 979
RsaNI GTAC 5 cut(s) 53, 271, 290, 751, 978
RseI CAYNNNNRTG 1 cut(s) 489
Rsr2I CGGWCCG 1 cut(s) 305
RsrII CGGWCCG 1 cut(s) 305
SacI GAGCTC 2 cut(s) 624, 711
SaqAI TTAA 1 cut(s) 237
Sau3AI GATC 3 cut(s) 175, 229, 414
Sau96I GGNCC 8 cut(s) 305, 339, 553, 741, 742, 827, 835, 933
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 8 cut(s) 29, 309, 592, 638, 692, 825, 826, 842
SduI GDGCHC 6 cut(s) 597, 624, 711, 745, 914, 968
SfaNI GCATC 1 cut(s) 470
SfiI GGCCNNNNNGGCC 1 cut(s) 470
SgrAI CRCCGGYG 1 cut(s) 563
SinI GGWCC 4 cut(s) 305, 339, 553, 835
SmaI CCCGGG 1 cut(s) 826
SmiMI CAYNNNNRTG 1 cut(s) 489
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 1 cut(s) 985
SstI GAGCTC 2 cut(s) 624, 711
StyD4I CCNGG 8 cut(s) 27, 307, 590, 636, 690, 823, 824, 840
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 4 cut(s) 61, 644, 982, 1059
TaiI ACGT 5 cut(s) 243, 666, 737, 822, 921
TaqI TCGA 4 cut(s) 124, 159, 390, 606
TasI AATT 1 cut(s) 985
TauI GCSGC 7 cut(s) 473, 534, 537, 590, 949, 1080, 1083
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 1046
TseI GCWGC 4 cut(s) 140, 528, 613, 796
TspDTI ATGAA 3 cut(s) 178, 844, 872
TspMI CCCGGG 1 cut(s) 824
TspRI CASTG 1 cut(s) 1046
Van91I CCANNNNNTGG 1 cut(s) 336
VpaK11BI GGWCC 4 cut(s) 305, 339, 553, 835
XceI RCATGY 2 cut(s) 75, 255
XmaI CCCGGG 1 cut(s) 824
XmnI GAANNNNTTC 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.