Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008036

Physical Location & Seq

Genomic Coordinates Forward (+)

25719958 .. 25721549

Gene Structure 1592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGTCTGAGTATTTGGTAACTGGAGGAACAGGTTTCATTGCTTCTTACATCATCAAATCACTTCTCGAACTCGGACACACCGTTCGAACAACTGTCCGAAACCCACGTGATGAAGAAAAGGTTGGATTTTTATGGGAATTTCAAGGAGCAAAACAGAGGCTAAAGATTCTCCAAGCTGATCTAACGGTAGAAGGAAGTTTTGATGAAGCAGTGAATGGTGTTGATGGAGTATTCCACACTGCTTCTCCTGTTCTTGTTCCACAGGATCATAACATTCAGGAGACTTTGGTTGATCCTATTATAAAGGGTACAACAAATGTGATGAGCTCTTGTGCCAAGTCTAAAGCCACATTGAAAAGGATTGTTCTTACGTCTTCTTGCTCTTCGATACGCTACCGTTTCGATGCAACTGAAGCTTCTCCTCTCAATGAGTCTCATTGGAGTGATCCTGAATATTGCAAACGTTTCAATCTTTGGTATGGATATGCAAAGACTTTAGGAGAAAGAGAGGCTTGGAGGATAGCTGAAGAGAAAGGATTAGACTTGGTTGTTGTGAATCCTTCGTTTGTGGTTGGTCCATTGCTTGGACCAAAACCAACAAGTACTCTGCTTATGATTCTTGCTATTGCTAAAGGTCTTGCTGGAGAGTATCCAAATTTCACTGTCGGGTTTGTGCATATAGATGATGTTGTTGCTGCACATGTATTGGCTATGGAAGAGCCTAAAGCATCAGGGAGAATCATATGTTCGAGTTCTGTTGCTCATTGGTCTGAGATCATTGAGTTGATGAGAAATAAGTATCCTAATTACCCATTTGAGAACAAGTGTAGTAACAAAGAAGGAGACAATAGTCCACATAGTATGGATACAAGGAAGATACATGAGTTGGGATTTGGATCCTTCAAGTCACTACCTGAGATGTTTGATGATTGCATCATCAGTTTTCAGAAGAAGGGTCTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0019438 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0080110 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

321

Amino Acids

35.67

Weight (kDa)

6.02

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	3 - 130	3.7e-06	KR domain
Epimerase	PF01370	5 - 244	1.6e-27	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	5 - 238	1e-16	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	5 - 267	1.6e-16	GDP-mannose 4,6 dehydratase
NmrA	PF05368	5 - 101	2.2e-09	NmrA-like family
NAD_binding_4	PF07993	6 - 200	6.1e-14	Male sterility protein
NAD_binding_10	PF13460	8 - 130	1.7e-10	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25460 AT1G68540 AT1G68540
fragaria_vesca	FvH4_4g27430 FvH4_4g27430
malus_domestica	MD13G1042500.v1.1 MD16G1043400.v1.1
prunus_persica	Prupe.1G310300_v2.0.a1
pyrus_communis	pycom13g03700 pycom13g03710 pycom13g03720 pycom16g03750
rosa_chinensis	RchiOBHm_Chr4g0435251
rosa_laevigata	RLG00000006604
rosa_multiflora	Rmu_sc0002132.1_g000069
rosa_roxburghii	Rroxscaffold_5G00376540
rosa_rugosa	Rorug04G0284000 Rorug04G0284100
rosa_samantha	Rh4AG339300 Rh4BG347700 Rh4CG362300 Rh4CG362400 Rh4DG341800
rosa_wichuraiana	Rw4G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	584
AclI	AACGTT	1 cut(s)	463
AclWI	GGATC	5 cut(s)	273, 287, 440, 891, 904
AcsI	RAATTY	2 cut(s)	137, 655
AcuI	CTGAAG	2 cut(s)	432, 546
AcvI	CACGTG	1 cut(s)	107
AfaI	GTAC	2 cut(s)	310, 604
AfiI	CCNNNNNNNGG	1 cut(s)	584
AflIII	ACRYGT	1 cut(s)	700
AgsI	TTSAA	4 cut(s)	143, 355, 469, 904
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AloI	GAACNNNNNNTCC	2 cut(s)	66, 98
AluBI	AGCT	4 cut(s)	176, 327, 416, 524
AluI	AGCT	4 cut(s)	176, 327, 416, 524
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	3 cut(s)	275, 438, 837
AlwI	GGATC	5 cut(s)	273, 287, 440, 891, 904
ApeKI	GCWGC	1 cut(s)	695
ApoI	RAATTY	2 cut(s)	137, 655
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
AspS9I	GGNCC	2 cut(s)	575, 587
AsuII	TTCGAA	1 cut(s)	85
AvaII	GGWCC	2 cut(s)	575, 587
BaeI	ACNNNNGTAYC	2 cut(s)	869, 902
BamHI	GGATCC	1 cut(s)	896
BanII	GRGCYC	1 cut(s)	329
BbrPI	CACGTG	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	682
BccI	CCATC	1 cut(s)	218
BciVI	GTATCC	3 cut(s)	660, 810, 859
BcoDI	GTCTC	3 cut(s)	275, 438, 837
BfuI	GTATCC	3 cut(s)	660, 810, 859
BisI	GCNGC	1 cut(s)	696
BlsI	GCNGC	1 cut(s)	697
BmcAI	AGTACT	1 cut(s)	604
Bme18I	GGWCC	2 cut(s)	575, 587
BmgT120I	GGNCC	2 cut(s)	575, 587
BmiI	GGNNCC	1 cut(s)	898
BmsI	GCATC	3 cut(s)	394, 737, 942
BoxI	GACNNNNGTC	1 cut(s)	849
BpiI	GAAGAC	1 cut(s)	366
BpmI	CTGGAG	2 cut(s)	42, 663
Bpu14I	TTCGAA	1 cut(s)	85
BsaAI	YACGTR	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	895
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	584
Bse1I	ACTGG	1 cut(s)	25
Bse3DI	GCAATG	2 cut(s)	36, 578
Bse8I	GATNNNNATC	1 cut(s)	895
BseJI	GATNNNNATC	1 cut(s)	895
BseLI	CCNNNNNNNGG	1 cut(s)	584
BseMI	GCAATG	2 cut(s)	36, 578
BseMII	CTCAG	2 cut(s)	762, 906
BseNI	ACTGG	1 cut(s)	25
BseRI	GAGGAG	1 cut(s)	411
BseXI	GCAGC	1 cut(s)	682
BsgI	GTGCAG	1 cut(s)	681
BsiHKAI	GWGCWC	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	584
BsmAI	GTCTC	3 cut(s)	275, 438, 837
Bsp119I	TTCGAA	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	6 cut(s)	178, 265, 292, 445, 774, 896
BspCNI	CTCAG	2 cut(s)	763, 907
BspLI	GGNNCC	1 cut(s)	898
BspPI	GGATC	5 cut(s)	273, 287, 440, 891, 904
BspQI	GCTCTTC	2 cut(s)	388, 711
BspT104I	TTCGAA	1 cut(s)	85
BsrDI	GCAATG	2 cut(s)	36, 578
BsrI	ACTGG	1 cut(s)	25
BssMI	GATC	6 cut(s)	178, 265, 292, 445, 774, 896
Bst4CI	ACNGT	5 cut(s)	82, 94, 187, 398, 664
Bst6I	CTCTTC	3 cut(s)	388, 522, 711
BstBAI	YACGTR	1 cut(s)	107
BstBI	TTCGAA	1 cut(s)	85
BstDEI	CTNAG	3 cut(s)	6, 771, 915
BstKTI	GATC	6 cut(s)	181, 268, 295, 448, 777, 899
BstMAI	GTCTC	3 cut(s)	275, 438, 837
BstMBI	GATC	6 cut(s)	178, 265, 292, 445, 774, 896
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNSI	RCATGY	1 cut(s)	704
BstPAI	GACNNNNGTC	1 cut(s)	849
BstV1I	GCAGC	1 cut(s)	682
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	896
BstYI	RGATCY	1 cut(s)	896
BsuI	GTATCC	3 cut(s)	660, 810, 859
BtsI	GCAGTG	2 cut(s)	216, 237
BtsIMutI	CAGTG	3 cut(s)	216, 237, 660
Cfr13I	GGNCC	2 cut(s)	575, 587
Csp6I	GTAC	2 cut(s)	309, 603
CviAII	CATG	2 cut(s)	701, 881
CviJI	RGCY	9 cut(s)	160, 176, 327, 347, 416, 512, 524, 710, 721
CviKI_1	RGCY	9 cut(s)	160, 176, 327, 347, 416, 512, 524, 710, 721
CviQI	GTAC	2 cut(s)	309, 603
DdeI	CTNAG	3 cut(s)	6, 771, 915
DpnI	GATC	6 cut(s)	180, 267, 294, 447, 776, 898
DpnII	GATC	6 cut(s)	178, 265, 292, 445, 774, 896
Eam1104I	CTCTTC	3 cut(s)	388, 522, 711
EarI	CTCTTC	3 cut(s)	388, 522, 711
Ecl136II	GAGCTC	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	329
Eco47I	GGWCC	2 cut(s)	575, 587
Eco53kI	GAGCTC	1 cut(s)	327
Eco57I	CTGAAG	2 cut(s)	432, 546
Eco72I	CACGTG	1 cut(s)	107
EcoICRI	GAGCTC	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	329
FaeI	CATG	2 cut(s)	704, 884
FalI	AAGNNNNNCTT	2 cut(s)	496, 528
FatI	CATG	2 cut(s)	700, 880
FauNDI	CATATG	1 cut(s)	743
Fnu4HI	GCNGC	1 cut(s)	696
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	696
GluI	GCNGC	1 cut(s)	696
GsuI	CTGGAG	2 cut(s)	42, 663
Hin1II	CATG	2 cut(s)	704, 884
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	5 cut(s)	166, 431, 556, 616, 738
Hpy166II	GTNNAC	1 cut(s)	854
Hpy188I	TCNGA	5 cut(s)	7, 74, 98, 772, 948
Hpy188III	TCNNGA	3 cut(s)	65, 278, 449
Hpy8I	GTNNAC	1 cut(s)	854
HpyAV	CCTTC	5 cut(s)	185, 570, 833, 910, 946
HpyCH4III	ACNGT	5 cut(s)	82, 94, 187, 398, 664
HpyCH4IV	ACGT	3 cut(s)	106, 371, 463
HpyCH4V	TGCA	6 cut(s)	407, 459, 488, 676, 698, 933
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	3 cut(s)	6, 771, 915
HpySE526I	ACGT	3 cut(s)	106, 371, 463
Hsp92II	CATG	2 cut(s)	704, 884
Kzo9I	GATC	6 cut(s)	178, 265, 292, 445, 774, 896
LguI	GCTCTTC	2 cut(s)	388, 711
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	9 cut(s)	6, 15, 248, 261, 263, 462, 627, 717, 927
Lsp1109I	GCAGC	1 cut(s)	682
LweI	GCATC	3 cut(s)	394, 737, 942
MaeII	ACGT	3 cut(s)	106, 371, 463
MaeIII	GTNAC	3 cut(s)	16, 830, 906
MalI	GATC	6 cut(s)	180, 267, 294, 447, 776, 898
MboI	GATC	6 cut(s)	178, 265, 292, 445, 774, 896
MboII	GAAGA	7 cut(s)	125, 366, 375, 539, 728, 886, 961
MflI	RGATCY	1 cut(s)	896
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	3 cut(s)	137, 655, 805
MlyI	GAGTC	1 cut(s)	440
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	5 cut(s)	17, 150, 432, 502, 510
MslI	CAYNNNNRTG	2 cut(s)	441, 681
MwoI	GCNNNNNNNGC	1 cut(s)	413
NdeI	CATATG	1 cut(s)	743
NdeII	GATC	6 cut(s)	178, 265, 292, 445, 774, 896
NlaIII	CATG	2 cut(s)	704, 884
NlaIV	GGNNCC	1 cut(s)	898
NmuCI	GTSAC	1 cut(s)	906
NspI	RCATGY	1 cut(s)	704
NspV	TTCGAA	1 cut(s)	85
PciI	ACATGT	1 cut(s)	700
PciSI	GCTCTTC	2 cut(s)	388, 711
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	4 cut(s)	166, 556, 616, 738
PflMI	CCANNNNNTGG	1 cut(s)	584
PkrI	GCNGC	1 cut(s)	697
PleI	GAGTC	1 cut(s)	439
PmaCI	CACGTG	1 cut(s)	107
PmlI	CACGTG	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	439
Ppu21I	YACGTR	1 cut(s)	107
PscI	ACATGT	1 cut(s)	700
PshAI	GACNNNNGTC	1 cut(s)	849
PsiI	TTATAA	1 cut(s)	302
Psp124BI	GAGCTC	1 cut(s)	329
Psp1406I	AACGTT	1 cut(s)	463
PspCI	CACGTG	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	898
PspPI	GGNCC	2 cut(s)	575, 587
PsuI	RGATCY	1 cut(s)	896
RsaI	GTAC	2 cut(s)	310, 604
RsaNI	GTAC	2 cut(s)	309, 603
RseI	CAYNNNNRTG	2 cut(s)	441, 681
SacI	GAGCTC	1 cut(s)	329
SapI	GCTCTTC	2 cut(s)	388, 711
SatI	GCNGC	1 cut(s)	696
Sau3AI	GATC	6 cut(s)	178, 265, 292, 445, 774, 896
Sau96I	GGNCC	2 cut(s)	575, 587
ScaI	AGTACT	1 cut(s)	604
SchI	GAGTC	1 cut(s)	440
SduI	GDGCHC	1 cut(s)	329
SfaNI	GCATC	3 cut(s)	394, 737, 942
SfuI	TTCGAA	1 cut(s)	85
SinI	GGWCC	2 cut(s)	575, 587
SmiMI	CAYNNNNRTG	2 cut(s)	441, 681
Sse9I	AATT	3 cut(s)	137, 655, 805
SspI	AATATT	1 cut(s)	455
SstI	GAGCTC	1 cut(s)	329
TaaI	ACNGT	5 cut(s)	82, 94, 187, 398, 664
TaiI	ACGT	3 cut(s)	109, 374, 466
TaqI	TCGA	5 cut(s)	66, 85, 386, 402, 749
TasI	AATT	3 cut(s)	137, 655, 805
TatI	WGTACW	1 cut(s)	602
TfiI	GAWTC	4 cut(s)	166, 556, 616, 738
TscAI	CASTG	3 cut(s)	216, 244, 667
TseFI	GTSAC	1 cut(s)	906
TseI	GCWGC	1 cut(s)	695
Tsp45I	GTSAC	1 cut(s)	906
TspDTI	ATGAA	3 cut(s)	25, 126, 219
TspRI	CASTG	3 cut(s)	216, 244, 667
Van91I	CCANNNNNTGG	1 cut(s)	584
VpaK11BI	GGWCC	2 cut(s)	575, 587
XapI	RAATTY	2 cut(s)	137, 655
XceI	RCATGY	1 cut(s)	704
ZrmI	AGTACT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.