Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008036

Physical Location & Seq

Genomic Coordinates Forward (+)

2470325 .. 2471023

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGTGGAAGGAAGCTTTGATGAGGCTGTACGAGGCGTCGATGGAGTCTTCCACACTGCATCACCCGTTCTTGTTCCATACGACGACAATGTTCAGGCAAATTTGATTGATCCATGTATAAGGGGCACACTGAATGTTCTGAATTCATGCTCAAAAGCACGTGTGAAACGGGTTGTGCTCACCTCTTCTTGCTCTTCAATAAGATATCGTTACGATGCCCAGCAGGCCTCTCCTCTCAACGAATCACATTGGAGTGATGCTGAGTACTGCAAACACTACAATGTAACCACGTACAAAACCCTTCCACTCTGGTATGCTTATGCAAAAACTACAGCAGAGAAGGAGGCCTGGAGAATTGCTGGGGAGAGCGGAATGGATCGATCGTTGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0019438 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0080110 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

131

Amino Acids

14.64

Weight (kDa)

6.27

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25460 AT1G68540 AT1G68540
fragaria_vesca	FvH4_4g27430 FvH4_4g27430
malus_domestica	MD13G1042500.v1.1 MD16G1043400.v1.1
prunus_persica	Prupe.1G310300_v2.0.a1
pyrus_communis	pycom13g03700 pycom13g03710 pycom13g03720 pycom16g03750
rosa_chinensis	RchiOBHm_Chr4g0435251
rosa_laevigata	RLG00000006604
rosa_multiflora	Rmu_sc0002132.1_g000069
rosa_roxburghii	Rroxscaffold_5G00376540
rosa_rugosa	Rorug04G0284000 Rorug04G0284100
rosa_samantha	Rh4AG339300 Rh4BG347700 Rh4CG362300 Rh4CG362400 Rh4DG341800
rosa_wichuraiana	Rw4G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	369
AciI	CCGC	1 cut(s)	369
AclWI	GGATC	2 cut(s)	104, 384
AcsI	RAATTY	2 cut(s)	100, 142
AcvI	CACGTG	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	3 cut(s)	30, 266, 293
AflIII	ACRYGT	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	198
AjnI	CCWGG	1 cut(s)	347
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
Alw21I	GWGCWC	1 cut(s)	180
AlwI	GGATC	2 cut(s)	104, 384
AoxI	GGCC	2 cut(s)	225, 345
ApoI	RAATTY	2 cut(s)	100, 142
AsuHPI	GGTGA	2 cut(s)	54, 172
BaeGI	GKGCMC	1 cut(s)	128
BbrPI	CACGTG	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	180
BccI	CCATC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	349
BfmI	CTRYAG	1 cut(s)	330
BglI	GCCNNNNNGGC	1 cut(s)	224
BmcAI	AGTACT	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	3 cut(s)	68, 205, 247
BpiI	GAAGAC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	370
Bsa29I	ATCGAT	1 cut(s)	379
BsaAI	YACGTR	2 cut(s)	161, 291
BsaHI	GRCGYC	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	349
BseCI	ATCGAT	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	128
BseYI	CCCAGC	2 cut(s)	219, 359
Bsh1285I	CGRYCG	1 cut(s)	383
BshFI	GGCC	2 cut(s)	227, 347
BshVI	ATCGAT	1 cut(s)	379
BsiEI	CGRYCG	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	180
BsnI	GGCC	2 cut(s)	227, 347
Bsp1286I	GDGCHC	2 cut(s)	128, 180
Bsp143I	GATC	3 cut(s)	109, 376, 380
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	2 cut(s)	227, 347
BspCNI	CTCAG	1 cut(s)	253
BspDI	ATCGAT	1 cut(s)	379
BspPI	GGATC	2 cut(s)	104, 384
BspQI	GCTCTTC	1 cut(s)	199
BsrBI	CCGCTC	1 cut(s)	369
BssMI	GATC	3 cut(s)	109, 376, 380
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	190, 199
BstACI	GRCGYC	1 cut(s)	36
BstBAI	YACGTR	2 cut(s)	161, 291
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	261
BstKTI	GATC	3 cut(s)	112, 379, 383
BstMBI	GATC	3 cut(s)	109, 376, 380
BstMCI	CGRYCG	1 cut(s)	383
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	347
BstSFI	CTRYAG	1 cut(s)	330
BstSLI	GKGCMC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	40
Bsu15I	ATCGAT	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	227, 347
BsuTUI	ATCGAT	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	54, 128
Cac8I	GCNNGC	1 cut(s)	225
ClaI	ATCGAT	1 cut(s)	379
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	3 cut(s)	29, 265, 292
CviAII	CATG	2 cut(s)	114, 147
CviJI	RGCY	4 cut(s)	15, 26, 227, 347
CviKI_1	RGCY	4 cut(s)	15, 26, 227, 347
CviQI	GTAC	3 cut(s)	29, 265, 292
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	3 cut(s)	111, 378, 382
DpnII	GATC	3 cut(s)	109, 376, 380
Eam1104I	CTCTTC	2 cut(s)	190, 199
EarI	CTCTTC	2 cut(s)	190, 199
Eco147I	AGGCCT	2 cut(s)	227, 347
Eco32I	GATATC	1 cut(s)	206
Eco72I	CACGTG	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	347
EcoRV	GATATC	1 cut(s)	206
FaeI	CATG	2 cut(s)	117, 150
FaiI	YATR	6 cut(s)	79, 115, 119, 148, 315, 321
FatI	CATG	2 cut(s)	113, 146
GsaI	CCCAGC	2 cut(s)	223, 363
GsuI	CTGGAG	1 cut(s)	370
HaeIII	GGCC	2 cut(s)	227, 347
HgaI	GACGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	117, 150
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	2 cut(s)	45, 242
HphI	GGTGA	2 cut(s)	54, 172
Hpy188I	TCNGA	1 cut(s)	141
Hpy99I	CGWCG	2 cut(s)	41, 86
HpyAV	CCTTC	2 cut(s)	311, 334
HpyCH4IV	ACGT	2 cut(s)	160, 290
HpyCH4V	TGCA	3 cut(s)	59, 270, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	2 cut(s)	160, 290
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	117, 150
Kzo9I	GATC	3 cut(s)	109, 376, 380
LguI	GCTCTTC	1 cut(s)	199
LpnPI	CCDG	7 cut(s)	80, 209, 233, 295, 334, 345, 361
LweI	GCATC	3 cut(s)	68, 205, 247
MaeII	ACGT	2 cut(s)	160, 290
MaeIII	GTNAC	2 cut(s)	209, 283
MalI	GATC	3 cut(s)	111, 378, 382
MbiI	CCGCTC	1 cut(s)	369
MboI	GATC	3 cut(s)	109, 376, 380
MboII	GAAGA	3 cut(s)	40, 177, 186
MhlI	GDGCHC	2 cut(s)	128, 180
MluCI	AATT	3 cut(s)	100, 142, 354
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	6 cut(s)	16, 26, 193, 238, 243, 337
MslI	CAYNNNNRTG	2 cut(s)	252, 279
MspR9I	CCNGG	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	3 cut(s)	109, 376, 380
NlaIII	CATG	2 cut(s)	117, 150
PceI	AGGCCT	2 cut(s)	227, 347
PciSI	GCTCTTC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	242
Ple19I	CGATCG	1 cut(s)	383
PleI	GAGTC	1 cut(s)	53
PmaCI	CACGTG	1 cut(s)	161
PmlI	CACGTG	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	53
Ppu21I	YACGTR	2 cut(s)	161, 291
Psp6I	CCWGG	1 cut(s)	347
PspCI	CACGTG	1 cut(s)	161
PspFI	CCCAGC	2 cut(s)	219, 359
PspGI	CCWGG	1 cut(s)	347
PvuI	CGATCG	1 cut(s)	383
RsaI	GTAC	3 cut(s)	30, 266, 293
RsaNI	GTAC	3 cut(s)	29, 265, 292
RseI	CAYNNNNRTG	2 cut(s)	252, 279
SapI	GCTCTTC	1 cut(s)	199
Sau3AI	GATC	3 cut(s)	109, 376, 380
ScaI	AGTACT	1 cut(s)	266
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	349
SduI	GDGCHC	2 cut(s)	128, 180
SetI	ASST	4 cut(s)	17, 163, 185, 293
SfaNI	GCATC	3 cut(s)	68, 205, 247
SfcI	CTRYAG	1 cut(s)	330
SmiMI	CAYNNNNRTG	2 cut(s)	252, 279
Sse9I	AATT	3 cut(s)	100, 142, 354
SseBI	AGGCCT	2 cut(s)	227, 347
SsiI	CCGC	1 cut(s)	369
StuI	AGGCCT	2 cut(s)	227, 347
StyD4I	CCNGG	1 cut(s)	347
TaiI	ACGT	2 cut(s)	163, 293
TaqI	TCGA	2 cut(s)	39, 379
TasI	AATT	3 cut(s)	100, 142, 354
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	242
TscAI	CASTG	2 cut(s)	61, 135
TspDTI	ATGAA	1 cut(s)	135
TspRI	CASTG	2 cut(s)	61, 135
XapI	RAATTY	2 cut(s)	100, 142
ZrmI	AGTACT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.