Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008036

Physical Location & Seq

Genomic Coordinates Reverse (-)

30167192 .. 30170443

Gene Structure 3252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G310300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCCAGAATACTGTGTAACTGGAGGAACAGGTTTCATAGCTGCCTACTTAGTCAAGGCTTTGCTTGAGAAGGGTCATCTTGTCCGGACCACGGTGCGAGACCCAGAGGATGTGGGGAAGGTTGGCTTTCTGTGGGAATTGAATGGAGCCAAGGAAAGGCTGAAGATGTTCAGAGCTGATTTAATGGAGGAAGGAAGCTTTGACGAGGCTATTCAAGGGGTTGATGGGGTTTTCCACACTGCATCACCTGTGCTTGTTCCATCTGACGACAACGTTCAGGCAACTCTGATTGATCCATGTATAAAGGGCACCTTGAATGTGCTGACTTCCTGCTCAAAAGCACGAGTGAAACGGGTTGTGCTCACCTCTTCTTGCTCTTCGATAAGATATCGTTACGATGCCGAACAAGTCTCTCCGCTCAATGAATCACATTGGAGCGATCCTGAATACTGCAAGAACTACAATCTTTGGTATGCTTATGCAAAGACAACAGCTGAGAAAGAAGCATGGAGAGTGGCCAAGGAGAGCGGAATGGATCTGGTGATGGTAAATCCCTCATTTGTGGTTGGTCCTCTGCTAGCACCACAACCAACCAGCACACTGCTTATGATACTGGCTATAACAAAAGGTGCAAGAGGTGAGTATCCAAATACAACAGTGGGGTTTGTGCACATAGATGATGTGGTATCTGCACACATCTTAGCCATGGAGGAGAGCAAAGCATCAGGCAGGCTTATATGCTCGAGCTCTGTGGCACACTGGTCGCAGATCATTGAGATGCTGAGGGCCAAATATCCATCTTATTCATATGAAAGCAAGTGTAGCAGCCAGAAAGGAGACAATAACCCACACAGCATGGATACCAGTAAAATAGCTCAACTGGGGTTTCCTCCTTTCAAAACGCTTGGAAAGATGTTTGATGACTGCATCACAAGTTTCCAAGAGAAAGGATTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0019438 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0080110 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

320

Amino Acids

35.25

Weight (kDa)

6.01

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25460 AT1G68540 AT1G68540
fragaria_vesca	FvH4_4g27430 FvH4_4g27430
malus_domestica	MD13G1042500.v1.1 MD16G1043400.v1.1
prunus_persica	Prupe.1G310300_v2.0.a1
pyrus_communis	pycom13g03700 pycom13g03710 pycom13g03720 pycom16g03750
rosa_chinensis	RchiOBHm_Chr4g0435251
rosa_laevigata	RLG00000006604
rosa_multiflora	Rmu_sc0002132.1_g000069
rosa_roxburghii	Rroxscaffold_5G00376540
rosa_rugosa	Rorug04G0284000 Rorug04G0284100
rosa_samantha	Rh4AG339300 Rh4BG347700 Rh4CG362300 Rh4CG362400 Rh4DG341800
rosa_wichuraiana	Rw4G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AccBSI	CCGCTC	2 cut(s)	418, 528
AccIII	TCCGGA	1 cut(s)	84
AciI	CCGC	2 cut(s)	416, 528
AclI	AACGTT	1 cut(s)	273
AclWI	GGATC	3 cut(s)	287, 434, 543
AcoI	YGGCCR	1 cut(s)	516
AcuI	CTGAAG	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	91, 156
AgsI	TTSAA	4 cut(s)	142, 215, 316, 898
AluBI	AGCT	6 cut(s)	41, 176, 198, 494, 747, 875
AluI	AGCT	6 cut(s)	41, 176, 198, 494, 747, 875
Alw21I	GWGCWC	3 cut(s)	363, 672, 749
Alw26I	GTCTC	3 cut(s)	93, 415, 831
Alw44I	GTGCAC	1 cut(s)	668
AlwI	GGATC	3 cut(s)	287, 434, 543
Ama87I	CYCGRG	1 cut(s)	742
Aor13HI	TCCGGA	1 cut(s)	84
AoxI	GGCC	2 cut(s)	516, 786
ApaLI	GTGCAC	1 cut(s)	668
ApeKI	GCWGC	2 cut(s)	41, 825
Asp700I	GAANNNNTTC	1 cut(s)	167
AspS9I	GGNCC	3 cut(s)	87, 569, 786
AsuHPI	GGTGA	4 cut(s)	237, 355, 553, 650
AsuNHI	GCTAGC	1 cut(s)	577
AvaI	CYCGRG	1 cut(s)	742
AvaII	GGWCC	2 cut(s)	87, 569
BaeGI	GKGCMC	2 cut(s)	311, 672
BalI	TGGCCA	1 cut(s)	518
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	749
BauI	CACGAG	1 cut(s)	342
Bbv12I	GWGCWC	3 cut(s)	363, 672, 749
BbvCI	CCTCAGC	1 cut(s)	782
BbvI	GCAGC	2 cut(s)	28, 837
BccI	CCATC	4 cut(s)	218, 268, 538, 805
BcgI	CGANNNNNNTGC	2 cut(s)	744, 778
BciVI	GTATCC	2 cut(s)	654, 853
BcoDI	GTCTC	3 cut(s)	93, 415, 831
BfaI	CTAG	1 cut(s)	578
BfuI	GTATCC	2 cut(s)	654, 853
BisI	GCNGC	2 cut(s)	42, 826
BlsI	GCNGC	2 cut(s)	43, 827
Bme18I	GGWCC	2 cut(s)	87, 569
BmeT110I	CYCGRG	1 cut(s)	742
BmgT120I	GGNCC	3 cut(s)	87, 569, 786
BmiI	GGNNCC	2 cut(s)	148, 310
BmrI	ACTGGG	1 cut(s)	890
BmsI	GCATC	5 cut(s)	251, 388, 731, 768, 936
BmtI	GCTAGC	1 cut(s)	581
BmuI	ACTGGG	1 cut(s)	890
BpmI	CTGGAG	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	782
BpuEI	CTTGAG	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	4 cut(s)	90, 150, 519, 705
BsaWI	WCCGGW	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 156
Bse1I	ACTGG	5 cut(s)	25, 618, 764, 864, 885
BseAI	TCCGGA	1 cut(s)	84
BseDI	CCNNGG	4 cut(s)	90, 150, 519, 705
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	2 cut(s)	91, 156
BseMII	CTCAG	2 cut(s)	486, 773
BseNI	ACTGG	5 cut(s)	25, 618, 764, 864, 885
BseRI	GAGGAG	1 cut(s)	725
BseSI	GKGCMC	2 cut(s)	311, 672
BseXI	GCAGC	2 cut(s)	28, 837
BsgI	GTGCAG	1 cut(s)	675
BshFI	GGCC	2 cut(s)	518, 788
BshNI	GGYRCC	1 cut(s)	308
BsiHKAI	GWGCWC	3 cut(s)	363, 672, 749
BsiHKCI	CYCGRG	1 cut(s)	742
BsiSI	CCGG	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	91, 156
BsmAI	GTCTC	3 cut(s)	93, 415, 831
BsnI	GGCC	2 cut(s)	518, 788
Bso31I	GGTCTC	1 cut(s)	93
BsoBI	CYCGRG	1 cut(s)	742
Bsp1286I	GDGCHC	4 cut(s)	311, 363, 672, 749
Bsp13I	TCCGGA	1 cut(s)	84
Bsp143I	GATC	4 cut(s)	292, 439, 535, 768
Bsp19I	CCATGG	1 cut(s)	705
BspACI	CCGC	2 cut(s)	416, 528
BspANI	GGCC	2 cut(s)	518, 788
BspCNI	CTCAG	2 cut(s)	487, 774
BspEI	TCCGGA	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	148, 310
BspOI	GCTAGC	1 cut(s)	581
BspPI	GGATC	3 cut(s)	287, 434, 543
BspQI	GCTCTTC	1 cut(s)	382
BspT107I	GGYRCC	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	93
BsrBI	CCGCTC	2 cut(s)	418, 528
BsrI	ACTGG	5 cut(s)	25, 618, 764, 864, 885
BssECI	CCNNGG	4 cut(s)	90, 150, 519, 705
BssMI	GATC	4 cut(s)	292, 439, 535, 768
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	3 cut(s)	150, 519, 705
Bst2BI	CACGAG	1 cut(s)	342
Bst4CI	ACNGT	3 cut(s)	14, 94, 658
Bst6I	CTCTTC	2 cut(s)	373, 382
BstC8I	GCNNGC	2 cut(s)	579, 731
BstDEI	CTNAG	4 cut(s)	49, 495, 700, 782
BstDSI	CCRYGG	2 cut(s)	90, 705
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	4 cut(s)	295, 442, 538, 771
BstMAI	GTCTC	3 cut(s)	93, 415, 831
BstMBI	GATC	4 cut(s)	292, 439, 535, 768
BstMWI	GCNNNNNNNGC	1 cut(s)	822
BstSLI	GKGCMC	2 cut(s)	311, 672
BstV1I	GCAGC	2 cut(s)	28, 837
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BsuI	GTATCC	2 cut(s)	654, 853
BsuRI	GGCC	2 cut(s)	518, 788
BtgI	CCRYGG	2 cut(s)	90, 705
BtsCI	GGATG	1 cut(s)	115
BtsI	GCAGTG	2 cut(s)	237, 599
BtsIMutI	CAGTG	4 cut(s)	237, 599, 663, 757
Cac8I	GCNNGC	2 cut(s)	579, 731
Cfr13I	GGNCC	3 cut(s)	87, 569, 786
CviAII	CATG	4 cut(s)	297, 507, 706, 856
DdeI	CTNAG	4 cut(s)	49, 495, 700, 782
DpnI	GATC	4 cut(s)	294, 441, 537, 770
DpnII	GATC	4 cut(s)	292, 439, 535, 768
EaeI	YGGCCR	1 cut(s)	516
Eam1104I	CTCTTC	2 cut(s)	373, 382
EarI	CTCTTC	2 cut(s)	373, 382
Ecl136II	GAGCTC	1 cut(s)	747
Eco130I	CCWWGG	3 cut(s)	150, 519, 705
Eco24I	GRGCYC	1 cut(s)	749
Eco31I	GGTCTC	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	389
Eco47I	GGWCC	2 cut(s)	87, 569
Eco53kI	GAGCTC	1 cut(s)	747
Eco57I	CTGAAG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	742
EcoICRI	GAGCTC	1 cut(s)	747
EcoRV	GATATC	1 cut(s)	389
EcoT14I	CCWWGG	3 cut(s)	150, 519, 705
EcoT38I	GRGCYC	1 cut(s)	749
ErhI	CCWWGG	3 cut(s)	150, 519, 705
FaeI	CATG	4 cut(s)	300, 510, 709, 859
FalI	AAGNNNNNCTT	4 cut(s)	110, 142, 296, 328
FatI	CATG	4 cut(s)	296, 506, 705, 855
FauNDI	CATATG	1 cut(s)	808
Fnu4HI	GCNGC	2 cut(s)	42, 826
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	749
Fsp4HI	GCNGC	2 cut(s)	42, 826
FspBI	CTAG	1 cut(s)	578
GluI	GCNGC	2 cut(s)	42, 826
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	518, 788
HapII	CCGG	1 cut(s)	85
Hin1II	CATG	4 cut(s)	300, 510, 709, 859
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	1 cut(s)	425
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	4 cut(s)	237, 355, 553, 650
Hpy166II	GTNNAC	1 cut(s)	670
Hpy188I	TCNGA	3 cut(s)	173, 265, 288
Hpy188III	TCNNGA	2 cut(s)	85, 443
Hpy8I	GTNNAC	1 cut(s)	670
HpyAV	CCTTC	3 cut(s)	64, 112, 185
HpyCH4III	ACNGT	3 cut(s)	14, 94, 658
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	7 cut(s)	242, 453, 482, 632, 670, 692, 927
HpyF10VI	GCNNNNNNNGC	1 cut(s)	822
HpyF3I	CTNAG	4 cut(s)	49, 495, 700, 782
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	4 cut(s)	300, 510, 709, 859
Kpn2I	TCCGGA	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	292, 439, 535, 768
LguI	GCTCTTC	1 cut(s)	382
LmnI	GCTCC	2 cut(s)	146, 435
Lsp1109I	GCAGC	2 cut(s)	28, 837
LweI	GCATC	5 cut(s)	251, 388, 731, 768, 936
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	16, 392
MalI	GATC	4 cut(s)	294, 441, 537, 770
MbiI	CCGCTC	2 cut(s)	418, 528
MboI	GATC	4 cut(s)	292, 439, 535, 768
MboII	GAAGA	3 cut(s)	175, 360, 369
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	4 cut(s)	311, 363, 672, 749
MlsI	TGGCCA	1 cut(s)	518
MluCI	AATT	1 cut(s)	137
MluNI	TGGCCA	1 cut(s)	518
Mox20I	TGGCCA	1 cut(s)	518
MroI	TCCGGA	1 cut(s)	84
MroXI	GAANNNNTTC	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	518
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	2 cut(s)	675, 776
Msp20I	TGGCCA	1 cut(s)	518
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	822
NcoI	CCATGG	1 cut(s)	705
NdeI	CATATG	1 cut(s)	808
NdeII	GATC	4 cut(s)	292, 439, 535, 768
NheI	GCTAGC	1 cut(s)	577
NlaIII	CATG	4 cut(s)	300, 510, 709, 859
NlaIV	GGNNCC	2 cut(s)	148, 310
PaeR7I	CTCGAG	1 cut(s)	742
PciSI	GCTCTTC	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	43, 827
Psp124BI	GAGCTC	1 cut(s)	749
Psp1406I	AACGTT	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	148, 310
PspPI	GGNCC	3 cut(s)	87, 569, 786
PspXI	VCTCGAGB	1 cut(s)	742
PsuI	RGATCY	1 cut(s)	535
PvuII	CAGCTG	1 cut(s)	494
RseI	CAYNNNNRTG	2 cut(s)	675, 776
SacI	GAGCTC	1 cut(s)	749
SapI	GCTCTTC	1 cut(s)	382
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	2 cut(s)	42, 826
Sau3AI	GATC	4 cut(s)	292, 439, 535, 768
Sau96I	GGNCC	3 cut(s)	87, 569, 786
SduI	GDGCHC	4 cut(s)	311, 363, 672, 749
SfaNI	GCATC	5 cut(s)	251, 388, 731, 768, 936
Sfr274I	CTCGAG	1 cut(s)	742
SinI	GGWCC	2 cut(s)	87, 569
SlaI	CTCGAG	1 cut(s)	742
SmiMI	CAYNNNNRTG	2 cut(s)	675, 776
SmlI	CTYRAG	2 cut(s)	65, 742
SmoI	CTYRAG	2 cut(s)	65, 742
Sse9I	AATT	1 cut(s)	137
SsiI	CCGC	2 cut(s)	416, 528
SspMI	CTAG	1 cut(s)	578
SstI	GAGCTC	1 cut(s)	749
StyI	CCWWGG	3 cut(s)	150, 519, 705
TaaI	ACNGT	3 cut(s)	14, 94, 658
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	380, 743
TasI	AATT	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	4 cut(s)	244, 606, 663, 764
TseI	GCWGC	2 cut(s)	41, 825
TspDTI	ATGAA	4 cut(s)	25, 438, 795, 825
TspRI	CASTG	4 cut(s)	244, 606, 663, 764
VneI	GTGCAC	1 cut(s)	668
VpaK11BI	GGWCC	2 cut(s)	87, 569
XhoI	CTCGAG	1 cut(s)	742
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.