Rorug04G0284000

Tetraketide alpha-pyrone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008036
Physical Location & Seq
Reverse (-)
45729062 .. 45730558
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0284000.1

Sequence Viewer

Length: 1086 bp
ATGATTGCTAGCAATGGCAACAAGAAGGTGGAGATAATATTTGACCAAGAGCATTGGGTCCCAAATACTGAGTACAGCAATAAGAAGTTCACTACCGCTATAGGGATTGAGGTTCGAAGTCGAGCTCCGGTATGTTACCGCGGATGGAGTAAGATTCCAGGAAATATTAAGAGGACACTACGAGAGGGATTGACGGTACACTTTGACGTGGAAATAGAACATCCAAAAATTATCTATTTTGTGGATGATAAGATGCGCTCGGCGTATACTCAATTCAAGTGGAAGTTGCATGATCACTACCAAAAATGTGGCACACCTGTTCGGGGACGAGCCACACTTCCTCCACCTGATCTATGGGGTGAGAGATCGACAGAGGAGTGGCATTGGCTATGTGATAAACTCTACACCGATCCAAAATATATTGATAAATGCGAGAAGAATTCAACTAGCCGAACGAGACAAAGGAGTACGCATCGTGGTGGAGCTATGCCTTTCATTCAACATGCTTTGAGGACAGCCAAGGAGGGTAATCCTTTGTCTTTCATAGACAATTGGGCAGCTATGTATCAAGATTCAAATAGCAATTGGGTTAGTGATGCTGCACGTGATAAATATGATCGACTGAAAAATAAGAGAGAAGAGCATAAGGAGAAACTAACCCTGGAGGCACCAGAGGGTACTCCACCAGAATCTGTACAAGTTACTGCGCGTGATGAGATTCCAATCATGGCTGAAGAGTGTGGAAGGAAGGGAAAAAGAGTTCGTGGTTTAGGCTCGTTTCCTCGCATGGAGCTTCCAACTGTTACATCTTCAACAGCTGTGAGTTCTGAGATGAACGTAATGCAAGATAAAGTGAAGAAGCTTGAATCAACTGTGGACACTATGCGGTCACAAAATGCACAGCTAATGACAATGTTGAAGAAGTTCATGATGAATAGCCAAGGTTGCTTTGCTGATACAGAAAACATTGACATGAATATCGTAGTACCCAACAGTGAAGAAGATGATGTCTTTGGAAGAGATGAAGACGGTGTCCAAAACAATGGAGATAATTCTGAAACAGAGGATTTGGAGGAAGATTTGTGA

Protein Analysis

361

Amino Acids

41.51

Weight (kDa)

5.93

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 126 - 262 3.6e-13 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 667
AccI GTMKAC 1 cut(s) 266
AccII CGCG 2 cut(s) 141, 709
AciI CCGC 4 cut(s) 96, 139, 141, 886
AclWI GGATC 1 cut(s) 404
AcsI RAATTY 1 cut(s) 439
AcuI CTGAAG 1 cut(s) 753
AcvI CACGTG 1 cut(s) 605
AfaI GTAC 6 cut(s) 74, 198, 469, 679, 696, 987
AfiI CCNNNNNNNGG 2 cut(s) 102, 323
AgsI TTSAA 7 cut(s) 277, 444, 500, 576, 813, 866, 919
AjiI CACGTC 1 cut(s) 208
AjnI CCWGG 2 cut(s) 157, 660
AloI GAACNNNNNNTCC 2 cut(s) 744, 776
AluBI AGCT 7 cut(s) 125, 485, 560, 793, 818, 862, 904
AluI AGCT 7 cut(s) 125, 485, 560, 793, 818, 862, 904
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 451
AlwI GGATC 1 cut(s) 404
AlwNI CAGNNNCTG 1 cut(s) 692
ApeKI GCWGC 2 cut(s) 557, 599
ApoI RAATTY 1 cut(s) 439
Asp700I GAANNNNTTC 1 cut(s) 923
AspLEI GCGC 2 cut(s) 258, 709
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 371
AsuII TTCGAA 1 cut(s) 115
AsuNHI GCTAGC 1 cut(s) 8
AvaII GGWCC 1 cut(s) 58
BanI GGYRCC 1 cut(s) 667
BanII GRGCYC 1 cut(s) 127
BbrPI CACGTG 1 cut(s) 605
BbsI GAAGAC 1 cut(s) 1032
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 569, 586
BccI CCATC 1 cut(s) 138
BciT130I CCWGG 2 cut(s) 159, 662
BclI TGATCA 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 451
BfaI CTAG 2 cut(s) 9, 447
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 2 cut(s) 558, 600
BlsI GCNGC 2 cut(s) 559, 601
Bme1390I CCNGG 2 cut(s) 159, 662
Bme18I GGWCC 1 cut(s) 58
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 3 cut(s) 59, 60, 669
BmrFI CCNGG 2 cut(s) 159, 662
BmsI GCATC 3 cut(s) 243, 481, 586
BmtI GCTAGC 1 cut(s) 12
BpiI GAAGAC 1 cut(s) 1032
BpmI CTGGAG 1 cut(s) 683
Bpu14I TTCGAA 1 cut(s) 115
BsaAI YACGTR 1 cut(s) 605
BsaBI GATNNNNATC 1 cut(s) 722
BsaJI CCNNGG 4 cut(s) 139, 519, 660, 940
BsaWI WCCGGW 1 cut(s) 127
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 323
Bse3DI GCAATG 1 cut(s) 19
Bse8I GATNNNNATC 1 cut(s) 722
BseBI CCWGG 2 cut(s) 159, 662
BseDI CCNNGG 4 cut(s) 139, 519, 660, 940
BseGI GGATG 3 cut(s) 149, 220, 250
BseJI GATNNNNATC 1 cut(s) 722
BseLI CCNNNNNNNGG 2 cut(s) 102, 323
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 60, 819
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 2 cut(s) 569, 586
BsgI GTGCAG 1 cut(s) 585
Bsh1236I CGCG 2 cut(s) 141, 709
BshNI GGYRCC 1 cut(s) 667
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 2 cut(s) 44, 339
BslI CCNNNNNNNGG 2 cut(s) 102, 323
BsmAI GTCTC 1 cut(s) 451
BsmFI GGGAC 2 cut(s) 44, 339
Bsp119I TTCGAA 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 127
Bsp1407I TGTACA 1 cut(s) 694
Bsp143I GATC 5 cut(s) 292, 349, 365, 409, 616
BspACI CCGC 4 cut(s) 96, 139, 141, 886
BspCNI CTCAG 2 cut(s) 61, 820
BspFNI CGCG 2 cut(s) 141, 709
BspHI TCATGA 1 cut(s) 927
BspLI GGNNCC 3 cut(s) 59, 60, 669
BspOI GCTAGC 1 cut(s) 12
BspPI GGATC 1 cut(s) 404
BspQI GCTCTTC 1 cut(s) 633
BspT104I TTCGAA 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 694
BssECI CCNNGG 4 cut(s) 139, 519, 660, 940
BssMI GATC 5 cut(s) 292, 349, 365, 409, 616
BssNAI GTATAC 1 cut(s) 267
BssT1I CCWWGG 2 cut(s) 519, 940
Bst1107I GTATAC 1 cut(s) 267
Bst2UI CCWGG 2 cut(s) 159, 662
Bst4CI ACNGT 5 cut(s) 196, 802, 874, 995, 1031
Bst6I CTCTTC 3 cut(s) 633, 729, 1012
BstAUI TGTACA 1 cut(s) 694
BstBAI YACGTR 1 cut(s) 605
BstBI TTCGAA 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 69, 828
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 3 cut(s) 149, 220, 250
BstFNI CGCG 2 cut(s) 141, 709
BstHHI GCGC 2 cut(s) 258, 709
BstKTI GATC 5 cut(s) 295, 352, 368, 412, 619
BstMAI GTCTC 1 cut(s) 451
BstMBI GATC 5 cut(s) 292, 349, 365, 409, 616
BstMWI GCNNNNNNNGC 1 cut(s) 945
BstNI CCWGG 2 cut(s) 159, 662
BstNSI RCATGY 1 cut(s) 506
BstSCI CCNGG 2 cut(s) 157, 660
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 2 cut(s) 141, 709
BstV1I GCAGC 2 cut(s) 569, 586
BstV2I GAAGAC 1 cut(s) 1032
BstXI CCANNNNNNTGG 2 cut(s) 308, 1043
BstZ17I GTATAC 1 cut(s) 267
BtgI CCRYGG 1 cut(s) 139
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 3 cut(s) 149, 220, 250
BtsIMutI CAGTG 1 cut(s) 1000
Cac8I GCNNGC 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 692
CciI TCATGA 1 cut(s) 927
CfoI GCGC 2 cut(s) 258, 709
Cfr13I GGNCC 1 cut(s) 58
Cfr42I CCGCGG 1 cut(s) 142
Csp6I GTAC 6 cut(s) 73, 197, 468, 678, 695, 986
CspCI CAANNNNNGTGG 2 cut(s) 260, 295
CviAII CATG 6 cut(s) 290, 503, 727, 787, 928, 973
CviQI GTAC 6 cut(s) 73, 197, 468, 678, 695, 986
DdeI CTNAG 2 cut(s) 69, 828
DpnI GATC 5 cut(s) 294, 351, 367, 411, 618
DpnII GATC 5 cut(s) 292, 349, 365, 409, 616
Eam1104I CTCTTC 3 cut(s) 633, 729, 1012
EarI CTCTTC 3 cut(s) 633, 729, 1012
Ecl136II GAGCTC 1 cut(s) 125
Eco130I CCWWGG 2 cut(s) 519, 940
Eco24I GRGCYC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 753
Eco72I CACGTG 1 cut(s) 605
EcoICRI GAGCTC 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 58
EcoRI GAATTC 1 cut(s) 439
EcoRII CCWGG 2 cut(s) 157, 660
EcoT14I CCWWGG 2 cut(s) 519, 940
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 2 cut(s) 519, 940
FaeI CATG 6 cut(s) 293, 506, 730, 790, 931, 976
FaqI GGGAC 2 cut(s) 44, 339
FatI CATG 6 cut(s) 289, 502, 726, 786, 927, 972
FbaI TGATCA 1 cut(s) 292
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 2 cut(s) 558, 600
FokI GGATG 3 cut(s) 156, 207, 257
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 2 cut(s) 558, 600
FspBI CTAG 2 cut(s) 9, 447
GlaI GCGC 2 cut(s) 257, 708
GluI GCNGC 2 cut(s) 558, 600
GsuI CTGGAG 1 cut(s) 683
HapII CCGG 1 cut(s) 128
HhaI GCGC 2 cut(s) 258, 709
Hin1II CATG 6 cut(s) 293, 506, 730, 790, 931, 976
Hin6I GCGC 2 cut(s) 256, 707
HinP1I GCGC 2 cut(s) 256, 707
HindIII AAGCTT 1 cut(s) 860
HinfI GANTC 5 cut(s) 154, 572, 689, 718, 866
HpaII CCGG 1 cut(s) 128
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 4 cut(s) 90, 199, 267, 877
Hpy188I TCNGA 2 cut(s) 829, 1057
Hpy188III TCNNGA 2 cut(s) 569, 928
Hpy8I GTNNAC 4 cut(s) 90, 199, 267, 877
HpyAV CCTTC 3 cut(s) 19, 738, 742
HpyCH4III ACNGT 5 cut(s) 196, 802, 874, 995, 1031
HpyCH4IV ACGT 3 cut(s) 207, 604, 837
HpyCH4V TGCA 4 cut(s) 289, 602, 844, 899
HpyF10VI GCNNNNNNNGC 1 cut(s) 945
HpyF3I CTNAG 2 cut(s) 69, 828
HpySE526I ACGT 3 cut(s) 207, 604, 837
Hsp92II CATG 6 cut(s) 293, 506, 730, 790, 931, 976
HspAI GCGC 2 cut(s) 256, 707
KflI GGGWCCC 1 cut(s) 58
Ksp22I TGATCA 1 cut(s) 292
KspI CCGCGG 1 cut(s) 142
Kzo9I GATC 5 cut(s) 292, 349, 365, 409, 616
LguI GCTCTTC 1 cut(s) 633
LmnI GCTCC 3 cut(s) 130, 482, 790
LpnPI CCDG 9 cut(s) 141, 144, 171, 330, 360, 647, 674, 684, 699
Lsp1109I GCAGC 2 cut(s) 569, 586
LweI GCATC 3 cut(s) 243, 481, 586
MaeI CTAG 2 cut(s) 9, 447
MaeII ACGT 3 cut(s) 207, 604, 837
MaeIII GTNAC 4 cut(s) 134, 700, 802, 888
MalI GATC 5 cut(s) 294, 351, 367, 411, 618
MboI GATC 5 cut(s) 292, 349, 365, 409, 616
MfeI CAATTG 2 cut(s) 550, 583
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 6 cut(s) 228, 272, 439, 550, 583, 1051
MmeI TCCRAC 1 cut(s) 821
MroXI GAANNNNTTC 1 cut(s) 923
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 2 cut(s) 477, 971
MspA1I CMGCKG 2 cut(s) 141, 818
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 2 cut(s) 159, 662
MunI CAATTG 2 cut(s) 550, 583
MvaI CCWGG 2 cut(s) 159, 662
MvnI CGCG 2 cut(s) 141, 709
MwoI GCNNNNNNNGC 1 cut(s) 945
NdeII GATC 5 cut(s) 292, 349, 365, 409, 616
NheI GCTAGC 1 cut(s) 8
NlaIII CATG 6 cut(s) 293, 506, 730, 790, 931, 976
NlaIV GGNNCC 3 cut(s) 59, 60, 669
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 888
NspI RCATGY 1 cut(s) 506
NspV TTCGAA 1 cut(s) 115
PagI TCATGA 1 cut(s) 927
PciSI GCTCTTC 1 cut(s) 633
PdmI GAANNNNTTC 1 cut(s) 923
PfeI GAWTC 5 cut(s) 154, 572, 689, 718, 866
PflFI GACNNNGTC 1 cut(s) 1031
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 2 cut(s) 559, 601
PmaCI CACGTG 1 cut(s) 605
PmlI CACGTG 1 cut(s) 605
Ppu21I YACGTR 1 cut(s) 605
PpuMI RGGWCCY 1 cut(s) 58
Psp124BI GAGCTC 1 cut(s) 127
Psp5II RGGWCCY 1 cut(s) 58
Psp6I CCWGG 2 cut(s) 157, 660
PspCI CACGTG 1 cut(s) 605
PspGI CCWGG 2 cut(s) 157, 660
PspN4I GGNNCC 3 cut(s) 59, 60, 669
PspPI GGNCC 1 cut(s) 58
PspPPI RGGWCCY 1 cut(s) 58
PstNI CAGNNNCTG 1 cut(s) 692
PsyI GACNNNGTC 1 cut(s) 1031
PvuII CAGCTG 1 cut(s) 818
RsaI GTAC 6 cut(s) 74, 198, 469, 679, 696, 987
RsaNI GTAC 6 cut(s) 73, 197, 468, 678, 695, 986
RseI CAYNNNNRTG 2 cut(s) 477, 971
SacI GAGCTC 1 cut(s) 127
SacII CCGCGG 1 cut(s) 142
SapI GCTCTTC 1 cut(s) 633
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 2 cut(s) 558, 600
Sau3AI GATC 5 cut(s) 292, 349, 365, 409, 616
Sau96I GGNCC 1 cut(s) 58
ScrFI CCNGG 2 cut(s) 159, 662
SduI GDGCHC 1 cut(s) 127
SfaNI GCATC 3 cut(s) 243, 481, 586
SfcI CTRYAG 1 cut(s) 99
Sfr303I CCGCGG 1 cut(s) 142
SfuI TTCGAA 1 cut(s) 115
SgrBI CCGCGG 1 cut(s) 142
SinI GGWCC 1 cut(s) 58
SmiMI CAYNNNNRTG 2 cut(s) 477, 971
Sse9I AATT 6 cut(s) 228, 272, 439, 550, 583, 1051
SsiI CCGC 4 cut(s) 96, 139, 141, 886
SspI AATATT 2 cut(s) 39, 166
SspMI CTAG 2 cut(s) 9, 447
SstI GAGCTC 1 cut(s) 127
StyD4I CCNGG 2 cut(s) 157, 660
StyI CCWWGG 2 cut(s) 519, 940
TaaI ACNGT 5 cut(s) 196, 802, 874, 995, 1031
TaiI ACGT 3 cut(s) 210, 607, 840
TaqI TCGA 4 cut(s) 115, 121, 368, 619
TasI AATT 6 cut(s) 228, 272, 439, 550, 583, 1051
TatI WGTACW 2 cut(s) 72, 694
TfiI GAWTC 5 cut(s) 154, 572, 689, 718, 866
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 1 cut(s) 1000
TseFI GTSAC 1 cut(s) 888
TseI GCWGC 2 cut(s) 557, 599
Tsp45I GTSAC 1 cut(s) 888
TspDTI ATGAA 7 cut(s) 484, 532, 848, 916, 947, 989, 1038
TspRI CASTG 1 cut(s) 1000
Tth111I GACNNNGTC 1 cut(s) 1031
VpaK11BI GGWCC 1 cut(s) 58
XapI RAATTY 1 cut(s) 439
XceI RCATGY 1 cut(s) 506
XcmI CCANNNNNNNNNTGG 1 cut(s) 351
XmiI GTMKAC 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 923
XspI CTAG 2 cut(s) 9, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.