Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008036

Physical Location & Seq

Genomic Coordinates Forward (+)

3052492 .. 3053921

Gene Structure 1430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1043400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGACAGCGGATGTGGGGAAGGTGGGTTGTCTGTGGGAGTTGAATGGAGCCAAGGAAAGGCTCAAGTTGTTGAAAGCTGATTTGATGGTGGAAGGAAGCTTTGATGAGGCTGTACGAGGCGTCGATGGAGTCTTCCACACTGCATCGCCCGAGGCATGGAGAATTGCCGAGGAGAGCAGAATGGATCTCGTGGTGGTGAATCCGTCATTCGTGTTCCCGAACACGACAGTAGGATTTGTGCACATAGATGATGTGGTGGCTGCGCACATTTTAGCAATGGTGCAAAGCAAAGCGTCGGGAAGGCTGATATGTTCGAGCTCGGTTGCGCACTGGTTGGAGATCAATGAGATGTTGAGGGCCAAATATCCATCCTATCCATATGAAAATAAGCGTAGCAGCGTGGAAGGAGATAGTAATCCACATAGCATGGATACCAGTAAAATAGCACCACTGGTATTTCCACCCTTCAAAACGCTTGAAACAACGTTTGATGACTGCATCACTAGTTTCCAACAGAAACGATTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0019438 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0080110 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

177

Amino Acids

19.58

Weight (kDa)

5.52

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25460 AT1G68540 AT1G68540
fragaria_vesca	FvH4_4g27430 FvH4_4g27430
malus_domestica	MD13G1042500.v1.1 MD16G1043400.v1.1
prunus_persica	Prupe.1G310300_v2.0.a1
pyrus_communis	pycom13g03700 pycom13g03710 pycom13g03720 pycom16g03750
rosa_chinensis	RchiOBHm_Chr4g0435251
rosa_laevigata	RLG00000006604
rosa_multiflora	Rmu_sc0002132.1_g000069
rosa_roxburghii	Rroxscaffold_5G00376540
rosa_rugosa	Rorug04G0284000 Rorug04G0284100
rosa_samantha	Rh4AG339300 Rh4BG347700 Rh4CG362300 Rh4CG362400 Rh4DG341800
rosa_wichuraiana	Rw4G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	264, 327
AciI	CCGC	1 cut(s)	8
AclI	AACGTT	1 cut(s)	485
AclWI	GGATC	1 cut(s)	192
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	2 cut(s)	57, 156
AgsI	TTSAA	4 cut(s)	43, 73, 469, 479
AhlI	ACTAGT	1 cut(s)	503
AluBI	AGCT	3 cut(s)	77, 99, 318
AluI	AGCT	3 cut(s)	77, 99, 318
Alw21I	GWGCWC	2 cut(s)	243, 320
Alw44I	GTGCAC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	192
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	357
ApaLI	GTGCAC	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	260, 396
AspLEI	GCGC	2 cut(s)	265, 328
AspS9I	GGNCC	1 cut(s)	357
AsuHPI	GGTGA	1 cut(s)	208
AvaI	CYCGRG	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	320
BauI	CACGAG	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	124
Bbv12I	GWGCWC	2 cut(s)	243, 320
BbvI	GCAGC	2 cut(s)	247, 408
BccI	CCATC	3 cut(s)	79, 119, 376
BciVI	GTATCC	1 cut(s)	424
BcuI	ACTAGT	1 cut(s)	503
BfaI	CTAG	1 cut(s)	504
BfuI	GTATCC	1 cut(s)	424
BisI	GCNGC	2 cut(s)	261, 397
BlsI	GCNGC	2 cut(s)	262, 398
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	1 cut(s)	49
BmsI	GCATC	2 cut(s)	152, 507
BpiI	GAAGAC	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	3 cut(s)	51, 150, 168
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 156
Bse1I	ACTGG	3 cut(s)	335, 435, 456
Bse3DI	GCAATG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	414
BseDI	CCNNGG	3 cut(s)	51, 150, 168
BseGI	GGATG	2 cut(s)	16, 368
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	2 cut(s)	57, 156
BseMI	GCAATG	1 cut(s)	282
BseNI	ACTGG	3 cut(s)	335, 435, 456
BseRI	GAGGAG	1 cut(s)	185
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	247, 408
BshFI	GGCC	1 cut(s)	359
BsiHKAI	GWGCWC	2 cut(s)	243, 320
BsiHKCI	CYCGRG	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	57, 156
BsnI	GGCC	1 cut(s)	359
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	243, 320
Bsp143I	GATC	2 cut(s)	184, 339
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	359
BspLI	GGNNCC	1 cut(s)	49
BspPI	GGATC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	3 cut(s)	335, 435, 456
BssECI	CCNNGG	3 cut(s)	51, 150, 168
BssMI	GATC	2 cut(s)	184, 339
BssNI	GRCGYC	1 cut(s)	120
BssSI	CACGAG	1 cut(s)	188
BssT1I	CCWWGG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	229
BstACI	GRCGYC	1 cut(s)	120
BstF5I	GGATG	2 cut(s)	16, 368
BstHHI	GCGC	2 cut(s)	265, 328
BstKTI	GATC	2 cut(s)	187, 342
BstMBI	GATC	2 cut(s)	184, 339
BstSLI	GKGCMC	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	247, 408
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuI	GTATCC	1 cut(s)	424
BsuRI	GGCC	1 cut(s)	359
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	16, 368
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	3 cut(s)	138, 328, 449
CfoI	GCGC	2 cut(s)	265, 328
Cfr13I	GGNCC	1 cut(s)	357
CseI	GACGC	2 cut(s)	109, 282
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	2 cut(s)	156, 427
CviJI	RGCY	9 cut(s)	50, 61, 77, 99, 110, 260, 304, 318, 359
CviKI_1	RGCY	9 cut(s)	50, 61, 77, 99, 110, 260, 304, 318, 359
CviQI	GTAC	1 cut(s)	113
DpnI	GATC	2 cut(s)	186, 341
DpnII	GATC	2 cut(s)	184, 339
Ecl136II	GAGCTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	320
Eco53kI	GAGCTC	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	2 cut(s)	159, 430
FaiI	YATR	8 cut(s)	157, 245, 310, 379, 381, 423, 428, 529
FatI	CATG	2 cut(s)	155, 426
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	2 cut(s)	261, 397
FokI	GGATG	2 cut(s)	23, 355
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	2 cut(s)	261, 397
FspBI	CTAG	1 cut(s)	504
FspI	TGCGCA	2 cut(s)	264, 327
GlaI	GCGC	2 cut(s)	264, 327
GluI	GCNGC	2 cut(s)	261, 397
HaeIII	GGCC	1 cut(s)	359
HgaI	GACGC	2 cut(s)	109, 282
HhaI	GCGC	2 cut(s)	265, 328
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	159, 430
Hin6I	GCGC	2 cut(s)	263, 326
HinP1I	GCGC	2 cut(s)	263, 326
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	2 cut(s)	129, 199
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188III	TCNNGA	2 cut(s)	217, 297
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	2 cut(s)	125, 298
HpyAV	CCTTC	5 cut(s)	13, 86, 294, 398, 475
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	485
HpyCH4V	TGCA	4 cut(s)	143, 241, 283, 498
HpySE526I	ACGT	1 cut(s)	485
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	159, 430
HspAI	GCGC	2 cut(s)	263, 326
Kzo9I	GATC	2 cut(s)	184, 339
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	3 cut(s)	316, 437, 448
Lsp1109I	GCAGC	2 cut(s)	247, 408
LweI	GCATC	2 cut(s)	152, 507
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	1 cut(s)	485
MalI	GATC	2 cut(s)	186, 341
MboI	GATC	2 cut(s)	184, 339
MboII	GAAGA	1 cut(s)	124
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	2 cut(s)	243, 320
MluCI	AATT	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	5 cut(s)	100, 110, 145, 163, 348
MslI	CAYNNNNRTG	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	8
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	2 cut(s)	184, 339
NlaIII	CATG	2 cut(s)	159, 430
NlaIV	GGNNCC	1 cut(s)	49
NmeAIII	GCCGAG	1 cut(s)	193
NsbI	TGCGCA	2 cut(s)	264, 327
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	2 cut(s)	262, 398
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	320
Psp1406I	AACGTT	1 cut(s)	485
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
RseI	CAYNNNNRTG	1 cut(s)	246
SacI	GAGCTC	1 cut(s)	320
SatI	GCNGC	2 cut(s)	261, 397
Sau3AI	GATC	2 cut(s)	184, 339
Sau96I	GGNCC	1 cut(s)	357
SchI	GAGTC	1 cut(s)	138
SduI	GDGCHC	2 cut(s)	243, 320
SetI	ASST	5 cut(s)	24, 79, 101, 320, 488
SfaNI	GCATC	2 cut(s)	152, 507
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
SpeI	ACTAGT	1 cut(s)	503
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	504
SstI	GAGCTC	1 cut(s)	320
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	1 cut(s)	488
TaqI	TCGA	2 cut(s)	123, 314
TasI	AATT	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	199
TscAI	CASTG	3 cut(s)	145, 335, 456
TseI	GCWGC	2 cut(s)	260, 396
TspDTI	ATGAA	1 cut(s)	396
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	3 cut(s)	145, 335, 456
VneI	GTGCAC	1 cut(s)	239
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.