Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008036

Physical Location & Seq

Genomic Coordinates Forward (+)

28432921 .. 28435297

Gene Structure 2377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g27430.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCCTGAATATTGTGTGACTGGAGGTACAGGGTTCATAGCTGCTTACTTGGTGAAGGCTTTGCTAGAAAATGGCCATGTTGTACGGGCTACTGTGCGAGACCCAGAGGATTTGGGGAAGGTTGGTTATCTTTGGGAGTTGAATGGAGCCAAGGACAGGCTTAAGCTGATCAAAGCTGATCTAATGGTGGAAGGAAGCTTTGATGAAGCCATGCAAGGCGTTGATGGGGTTTTCCACACCGCGTCACCGGTGCTTGTTCCATACGATAACAATATTCAGGCGACCTTGATTGATCCATGTATAAAGGGCACTTTGAATGTGCTGAGTTCCTGCTCGAAAGCACGCGTTAAAAGGATTGTGCTCACATCTTCTTGTTCTTCAATAAGATACCGTTACGATGCCCAAGAGGCCTCTCCTCTCAATGAGTCACATTGGAGCGATCCTGAATATTGCAAACACTTCAATCTTTGGTATGCCTATGCTAAGACAACCGCGGAGAAAGATGCGTGGAGAATCGCCGAAGAGAGTGGATTGAATCTAGTGGTGGTGAATCCGTCTTTCGTGGTTGGTCCTCTGCTAGCACCACAACCTACAAGCACACTGCTGATGATACTGGCAATACTTAAAGGTTTAAGAGGTGATTACCCAAATACAACAGTAGGATTTGTGCACATAGATGATGTGGTAGCTGCACACATTTTGGCAATGGAGGAAAGCAAAGCATCAGGTAGGTTTATATGTTCAGGCTCGGTAGCGCACTGGTCGCAGATCATTGAGATTCTCAAGGCCAAATATCCATCCTATCCATATGAAAGCAAGTGTAGCAGCAATGAAGGAGACAATAACCCACATAGCATGGACACCACTAAAATTGCTCAACTGGGTTTTCCTCCTTTCAAAACGCTTGAAGAAATGTTTGATGACTGCATCACAAGTTTTCAAGAGAAAGGGTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0019438 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0080110 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

320

Amino Acids

35.2

Weight (kDa)

5.41

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_4	PF07993	5 - 107	5.2e-06	Male sterility protein
Epimerase	PF01370	10 - 151	1.5e-14	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	10 - 147	9.9e-08	3-beta hydroxysteroid dehydrogenase/isomerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25460 AT1G68540 AT1G68540
fragaria_vesca	FvH4_4g27430 FvH4_4g27430
malus_domestica	MD13G1042500.v1.1 MD16G1043400.v1.1
prunus_persica	Prupe.1G310300_v2.0.a1
pyrus_communis	pycom13g03700 pycom13g03710 pycom13g03720 pycom16g03750
rosa_chinensis	RchiOBHm_Chr4g0435251
rosa_laevigata	RLG00000006604
rosa_multiflora	Rmu_sc0002132.1_g000069
rosa_roxburghii	Rroxscaffold_5G00376540
rosa_rugosa	Rorug04G0284000 Rorug04G0284100
rosa_samantha	Rh4AG339300 Rh4BG347700 Rh4CG362300 Rh4CG362400 Rh4DG341800
rosa_wichuraiana	Rw4G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	242, 345, 494
AciI	CCGC	3 cut(s)	240, 492, 494
AclWI	GGATC	2 cut(s)	287, 434
AcoI	YGGCCR	1 cut(s)	73
AfaI	GTAC	2 cut(s)	28, 84
AfiI	CCNNNNNNNGG	1 cut(s)	156
AflII	CTTAAG	1 cut(s)	161
AflIII	ACRYGT	1 cut(s)	343
AgeI	ACCGGT	1 cut(s)	247
AgsI	TTSAA	8 cut(s)	142, 316, 381, 463, 535, 898, 908, 941
AluBI	AGCT	5 cut(s)	41, 166, 176, 198, 689
AluI	AGCT	5 cut(s)	41, 166, 176, 198, 689
Alw21I	GWGCWC	2 cut(s)	363, 672
Alw26I	GTCTC	2 cut(s)	93, 831
Alw44I	GTGCAC	1 cut(s)	668
AlwI	GGATC	2 cut(s)	287, 434
AoxI	GGCC	3 cut(s)	73, 408, 786
ApaLI	GTGCAC	1 cut(s)	668
ApeKI	GCWGC	3 cut(s)	41, 689, 825
AsiGI	ACCGGT	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	757
AspS9I	GGNCC	1 cut(s)	569
AsuHPI	GGTGA	4 cut(s)	64, 237, 559, 650
AsuNHI	GCTAGC	1 cut(s)	577
AvaII	GGWCC	1 cut(s)	569
BaeGI	GKGCMC	2 cut(s)	311, 672
BalI	TGGCCA	1 cut(s)	75
Bbv12I	GWGCWC	2 cut(s)	363, 672
BbvI	GCAGC	3 cut(s)	28, 676, 837
BccI	CCATC	2 cut(s)	218, 805
BclI	TGATCA	1 cut(s)	168
BcoDI	GTCTC	2 cut(s)	93, 831
BfaI	CTAG	3 cut(s)	65, 539, 578
BfrI	CTTAAG	1 cut(s)	161
BglI	GCCNNNNNGGC	1 cut(s)	407
BisI	GCNGC	3 cut(s)	42, 690, 826
BlsI	GCNGC	3 cut(s)	43, 691, 827
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	569
BmiI	GGNNCC	1 cut(s)	148
BmrI	ACTGGG	1 cut(s)	890
BmsI	GCATC	4 cut(s)	388, 493, 731, 936
BmtI	GCTAGC	1 cut(s)	581
BmuI	ACTGGG	1 cut(s)	890
BpmI	CTGGAG	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	767
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	150, 492
BsaWI	WCCGGW	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	4 cut(s)	25, 618, 764, 885
Bse3DI	GCAATG	2 cut(s)	711, 835
BseDI	CCNNGG	2 cut(s)	150, 492
BseGI	GGATG	1 cut(s)	797
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMI	GCAATG	2 cut(s)	711, 835
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	4 cut(s)	25, 618, 764, 885
BseRI	GAGGAG	1 cut(s)	405
BseSI	GKGCMC	2 cut(s)	311, 672
BseXI	GCAGC	3 cut(s)	28, 676, 837
BsgI	GTGCAG	1 cut(s)	675
Bsh1236I	CGCG	3 cut(s)	242, 345, 494
BshFI	GGCC	3 cut(s)	75, 410, 788
BshTI	ACCGGT	1 cut(s)	247
BsiHKAI	GWGCWC	2 cut(s)	363, 672
BsiSI	CCGG	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	2 cut(s)	93, 831
BsnI	GGCC	3 cut(s)	75, 410, 788
Bso31I	GGTCTC	1 cut(s)	93
Bsp1286I	GDGCHC	3 cut(s)	311, 363, 672
Bsp143I	GATC	5 cut(s)	168, 178, 292, 439, 768
BspACI	CCGC	3 cut(s)	240, 492, 494
BspANI	GGCC	3 cut(s)	75, 410, 788
BspCNI	CTCAG	1 cut(s)	315
BspFNI	CGCG	3 cut(s)	242, 345, 494
BspLI	GGNNCC	1 cut(s)	148
BspOI	GCTAGC	1 cut(s)	581
BspPI	GGATC	2 cut(s)	287, 434
BspTI	CTTAAG	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	93
BsrDI	GCAATG	2 cut(s)	711, 835
BsrFI	RCCGGY	1 cut(s)	247
BsrI	ACTGG	4 cut(s)	25, 618, 764, 885
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	2 cut(s)	150, 492
BssMI	GATC	5 cut(s)	168, 178, 292, 439, 768
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	3 cut(s)	94, 392, 658
Bst6I	CTCTTC	1 cut(s)	516
BstAFI	CTTAAG	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	343, 579
BstDEI	CTNAG	2 cut(s)	323, 483
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	1 cut(s)	797
BstFNI	CGCG	3 cut(s)	242, 345, 494
BstHHI	GCGC	1 cut(s)	757
BstKTI	GATC	5 cut(s)	171, 181, 295, 442, 771
BstMAI	GTCTC	2 cut(s)	93, 831
BstMBI	GATC	5 cut(s)	168, 178, 292, 439, 768
BstMWI	GCNNNNNNNGC	3 cut(s)	407, 763, 822
BstSLI	GKGCMC	2 cut(s)	311, 672
BstUI	CGCG	3 cut(s)	242, 345, 494
BstV1I	GCAGC	3 cut(s)	28, 676, 837
BsuRI	GGCC	3 cut(s)	75, 410, 788
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	797
BtsI	GCAGTG	1 cut(s)	599
BtsIMutI	CAGTG	2 cut(s)	599, 757
Cac8I	GCNNGC	2 cut(s)	343, 579
CfoI	GCGC	1 cut(s)	757
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	569
Cfr42I	CCGCGG	1 cut(s)	495
CseI	GACGC	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	27, 83
CspAI	ACCGGT	1 cut(s)	247
CspCI	CAANNNNNGTGG	2 cut(s)	853, 888
CviAII	CATG	4 cut(s)	77, 211, 297, 856
CviQI	GTAC	2 cut(s)	27, 83
DdeI	CTNAG	2 cut(s)	323, 483
DpnI	GATC	5 cut(s)	170, 180, 294, 441, 770
DpnII	GATC	5 cut(s)	168, 178, 292, 439, 768
EaeI	YGGCCR	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
Eco130I	CCWWGG	1 cut(s)	150
Eco147I	AGGCCT	1 cut(s)	410
Eco31I	GGTCTC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	569
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	4 cut(s)	80, 214, 300, 859
FatI	CATG	4 cut(s)	76, 210, 296, 855
FauNDI	CATATG	1 cut(s)	808
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	3 cut(s)	42, 690, 826
FokI	GGATG	1 cut(s)	784
Fsp4HI	GCNGC	3 cut(s)	42, 690, 826
FspBI	CTAG	3 cut(s)	65, 539, 578
GlaI	GCGC	1 cut(s)	756
GluI	GCNGC	3 cut(s)	42, 690, 826
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	3 cut(s)	75, 410, 788
HapII	CCGG	1 cut(s)	248
HgaI	GACGC	1 cut(s)	231
HhaI	GCGC	1 cut(s)	757
Hin1II	CATG	4 cut(s)	80, 214, 300, 859
Hin6I	GCGC	1 cut(s)	755
HinP1I	GCGC	1 cut(s)	755
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	5 cut(s)	425, 513, 535, 550, 778
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	4 cut(s)	64, 237, 559, 650
Hpy166II	GTNNAC	1 cut(s)	670
Hpy188I	TCNGA	1 cut(s)	959
Hpy188III	TCNNGA	2 cut(s)	443, 941
Hpy8I	GTNNAC	1 cut(s)	670
HpyAV	CCTTC	4 cut(s)	49, 112, 185, 827
HpyCH4III	ACNGT	3 cut(s)	94, 392, 658
HpyCH4V	TGCA	5 cut(s)	214, 453, 670, 692, 927
HpyF10VI	GCNNNNNNNGC	3 cut(s)	407, 763, 822
HpyF3I	CTNAG	2 cut(s)	323, 483
Hsp92II	CATG	4 cut(s)	80, 214, 300, 859
HspAI	GCGC	1 cut(s)	755
Ksp22I	TGATCA	1 cut(s)	168
KspI	CCGCGG	1 cut(s)	495
Kzo9I	GATC	5 cut(s)	168, 178, 292, 439, 768
LmnI	GCTCC	2 cut(s)	146, 435
Lsp1109I	GCAGC	3 cut(s)	28, 676, 837
LweI	GCATC	4 cut(s)	388, 493, 731, 936
MaeI	CTAG	3 cut(s)	65, 539, 578
MaeIII	GTNAC	4 cut(s)	16, 243, 392, 426
MalI	GATC	5 cut(s)	170, 180, 294, 441, 770
MboI	GATC	5 cut(s)	168, 178, 292, 439, 768
MboII	GAAGA	4 cut(s)	360, 369, 533, 920
MhlI	GDGCHC	3 cut(s)	311, 363, 672
MlsI	TGGCCA	1 cut(s)	75
MluCI	AATT	1 cut(s)	870
MluI	ACGCGT	1 cut(s)	343
MluNI	TGGCCA	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	434
MnlI	CCTC	9 cut(s)	17, 100, 400, 421, 426, 582, 629, 703, 900
Mox20I	TGGCCA	1 cut(s)	75
MscI	TGGCCA	1 cut(s)	75
MseI	TTAA	4 cut(s)	162, 348, 624, 632
MslI	CAYNNNNRTG	1 cut(s)	675
Msp20I	TGGCCA	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	494
MspCI	CTTAAG	1 cut(s)	161
MspI	CCGG	1 cut(s)	248
MvnI	CGCG	3 cut(s)	242, 345, 494
MwoI	GCNNNNNNNGC	3 cut(s)	407, 763, 822
NdeI	CATATG	1 cut(s)	808
NdeII	GATC	5 cut(s)	168, 178, 292, 439, 768
NheI	GCTAGC	1 cut(s)	577
NlaIII	CATG	4 cut(s)	80, 214, 300, 859
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	3 cut(s)	16, 243, 426
PceI	AGGCCT	1 cut(s)	410
PfeI	GAWTC	4 cut(s)	513, 535, 550, 778
PinAI	ACCGGT	1 cut(s)	247
PkrI	GCNGC	3 cut(s)	43, 691, 827
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	569
RsaI	GTAC	2 cut(s)	28, 84
RsaNI	GTAC	2 cut(s)	27, 83
RseI	CAYNNNNRTG	1 cut(s)	675
SacII	CCGCGG	1 cut(s)	495
SaqAI	TTAA	4 cut(s)	162, 348, 624, 632
SatI	GCNGC	3 cut(s)	42, 690, 826
Sau3AI	GATC	5 cut(s)	168, 178, 292, 439, 768
Sau96I	GGNCC	1 cut(s)	569
SchI	GAGTC	1 cut(s)	434
SduI	GDGCHC	3 cut(s)	311, 363, 672
SfaNI	GCATC	4 cut(s)	388, 493, 731, 936
Sfr303I	CCGCGG	1 cut(s)	495
SgrAI	CRCCGGYG	1 cut(s)	247
SgrBI	CCGCGG	1 cut(s)	495
SinI	GGWCC	1 cut(s)	569
SmiMI	CAYNNNNRTG	1 cut(s)	675
SmlI	CTYRAG	2 cut(s)	161, 782
SmoI	CTYRAG	2 cut(s)	161, 782
Sse9I	AATT	1 cut(s)	870
SseBI	AGGCCT	1 cut(s)	410
SsiI	CCGC	3 cut(s)	240, 492, 494
SspI	AATATT	3 cut(s)	11, 274, 449
SspMI	CTAG	3 cut(s)	65, 539, 578
StuI	AGGCCT	1 cut(s)	410
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	3 cut(s)	94, 392, 658
TaqI	TCGA	1 cut(s)	335
TasI	AATT	1 cut(s)	870
TfiI	GAWTC	4 cut(s)	513, 535, 550, 778
Tru1I	TTAA	4 cut(s)	162, 348, 624, 632
Tru9I	TTAA	4 cut(s)	162, 348, 624, 632
TscAI	CASTG	2 cut(s)	606, 764
TseFI	GTSAC	3 cut(s)	16, 243, 426
TseI	GCWGC	3 cut(s)	41, 689, 825
Tsp45I	GTSAC	3 cut(s)	16, 243, 426
TspDTI	ATGAA	4 cut(s)	25, 219, 825, 846
TspGWI	ACGGA	1 cut(s)	543
TspRI	CASTG	2 cut(s)	606, 764
Vha464I	CTTAAG	1 cut(s)	161
VneI	GTGCAC	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	569
XspI	CTAG	3 cut(s)	65, 539, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.