Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008036

Physical Location & Seq

Genomic Coordinates Forward (+)

2471080 .. 2471683

Gene Structure 604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03720.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGATACTGGCTATACTGAAAGGTTGTAACGATATTGAATTTGCAATTTCTGAGATAGGTTCAAGAGGGGAGTACCCGAACACGACAGTAGGATTTGTGCACATAGATGATGTGGTAGCTGCGCACATTTTAGCAATGGAGGAAAGCAAAGCGTCGGGAAGGCTGATATGTTCGAGCTCGGTTGCGCACTGGTCGGAGATCATTGAGATGCTGAGGGCCAAATATCCATCCTATCCATATGAAAACAAGTGTAGCAGCGTGGAAGGAGACAGTAATCCACATAGCATGGATACCAGTAAAATTGCTCAACTGGGATTTCCACCTTTCAAAACGCTTGAAACAATGTTCGATGACTGCATCACTAGTTTCCAACAGAAAGGATTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0019438 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0080110 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

130

Amino Acids

14.26

Weight (kDa)

4.93

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25460 AT1G68540 AT1G68540
fragaria_vesca	FvH4_4g27430 FvH4_4g27430
malus_domestica	MD13G1042500.v1.1 MD16G1043400.v1.1
prunus_persica	Prupe.1G310300_v2.0.a1
pyrus_communis	pycom13g03700 pycom13g03710 pycom13g03720 pycom16g03750
rosa_chinensis	RchiOBHm_Chr4g0435251
rosa_laevigata	RLG00000006604
rosa_multiflora	Rmu_sc0002132.1_g000069
rosa_roxburghii	Rroxscaffold_5G00376540
rosa_rugosa	Rorug04G0284000 Rorug04G0284100
rosa_samantha	Rh4AG339300 Rh4BG347700 Rh4CG362300 Rh4CG362400 Rh4DG341800
rosa_wichuraiana	Rw4G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	123, 186
AcsI	RAATTY	1 cut(s)	38
AfaI	GTAC	1 cut(s)	74
AgsI	TTSAA	4 cut(s)	38, 63, 328, 338
AhlI	ACTAGT	1 cut(s)	362
AluBI	AGCT	2 cut(s)	119, 177
AluI	AGCT	2 cut(s)	119, 177
Alw21I	GWGCWC	2 cut(s)	102, 179
Alw26I	GTCTC	1 cut(s)	261
Alw44I	GTGCAC	1 cut(s)	98
AoxI	GGCC	1 cut(s)	216
ApaLI	GTGCAC	1 cut(s)	98
ApeKI	GCWGC	2 cut(s)	119, 255
ApoI	RAATTY	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	124, 187
AspS9I	GGNCC	1 cut(s)	216
BaeGI	GKGCMC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	179
Bbv12I	GWGCWC	2 cut(s)	102, 179
BbvCI	CCTCAGC	1 cut(s)	212
BbvI	GCAGC	2 cut(s)	106, 267
BccI	CCATC	1 cut(s)	235
BciVI	GTATCC	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	261
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	1 cut(s)	363
BfuI	GTATCC	1 cut(s)	283
BisI	GCNGC	2 cut(s)	120, 256
BlsI	GCNGC	2 cut(s)	121, 257
BmgT120I	GGNCC	1 cut(s)	216
BmrI	ACTGGG	1 cut(s)	320
BmsI	GCATC	2 cut(s)	198, 366
BmuI	ACTGGG	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	212
Bse1I	ACTGG	4 cut(s)	12, 194, 294, 315
Bse3DI	GCAATG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	42, 203
BseNI	ACTGG	4 cut(s)	12, 194, 294, 315
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	106, 267
BshFI	GGCC	1 cut(s)	218
BsiHKAI	GWGCWC	2 cut(s)	102, 179
BsmAI	GTCTC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	218
Bsp1286I	GDGCHC	2 cut(s)	102, 179
Bsp143I	GATC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	2 cut(s)	43, 204
BsrDI	GCAATG	1 cut(s)	141
BsrI	ACTGG	4 cut(s)	12, 194, 294, 315
BssMI	GATC	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	88, 272
BstDEI	CTNAG	2 cut(s)	51, 212
BstF5I	GGATG	1 cut(s)	227
BstHHI	GCGC	2 cut(s)	124, 187
BstKTI	GATC	1 cut(s)	201
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	106, 267
BsuI	GTATCC	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	218
BtsCI	GGATG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	187
CfoI	GCGC	2 cut(s)	124, 187
Cfr13I	GGNCC	1 cut(s)	216
CseI	GACGC	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	1 cut(s)	286
CviJI	RGCY	5 cut(s)	11, 119, 163, 177, 218
CviKI_1	RGCY	5 cut(s)	11, 119, 163, 177, 218
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	2 cut(s)	51, 212
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	179
Eco53kI	GAGCTC	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	179
FaeI	CATG	1 cut(s)	289
FaiI	YATR	8 cut(s)	14, 104, 169, 238, 240, 282, 287, 388
FatI	CATG	1 cut(s)	285
FauNDI	CATATG	1 cut(s)	238
Fnu4HI	GCNGC	2 cut(s)	120, 256
FokI	GGATG	1 cut(s)	214
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	2 cut(s)	120, 256
FspBI	CTAG	1 cut(s)	363
FspI	TGCGCA	2 cut(s)	123, 186
GlaI	GCGC	2 cut(s)	123, 186
GluI	GCNGC	2 cut(s)	120, 256
HaeIII	GGCC	1 cut(s)	218
HgaI	GACGC	1 cut(s)	141
HhaI	GCGC	2 cut(s)	124, 187
Hin1II	CATG	1 cut(s)	289
Hin6I	GCGC	2 cut(s)	122, 185
HinP1I	GCGC	2 cut(s)	122, 185
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	52, 196
Hpy188III	TCNNGA	2 cut(s)	63, 156
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	2 cut(s)	153, 257
HpyCH4III	ACNGT	2 cut(s)	88, 272
HpyCH4V	TGCA	3 cut(s)	44, 100, 357
HpyF3I	CTNAG	2 cut(s)	51, 212
Hsp92II	CATG	1 cut(s)	289
HspAI	GCGC	2 cut(s)	122, 185
Kzo9I	GATC	1 cut(s)	198
LpnPI	CCDG	3 cut(s)	175, 296, 307
Lsp1109I	GCAGC	2 cut(s)	106, 267
LweI	GCATC	2 cut(s)	198, 366
MaeI	CTAG	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MhlI	GDGCHC	2 cut(s)	102, 179
MluCI	AATT	3 cut(s)	38, 45, 300
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	3 cut(s)	59, 133, 207
MslI	CAYNNNNRTG	2 cut(s)	105, 206
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	1 cut(s)	198
NlaIII	CATG	1 cut(s)	289
NsbI	TGCGCA	2 cut(s)	123, 186
PkrI	GCNGC	2 cut(s)	121, 257
Psp124BI	GAGCTC	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	216
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
RseI	CAYNNNNRTG	2 cut(s)	105, 206
SacI	GAGCTC	1 cut(s)	179
SatI	GCNGC	2 cut(s)	120, 256
Sau3AI	GATC	1 cut(s)	198
Sau96I	GGNCC	1 cut(s)	216
SduI	GDGCHC	2 cut(s)	102, 179
SetI	ASST	5 cut(s)	25, 61, 121, 179, 325
SfaNI	GCATC	2 cut(s)	198, 366
SmiMI	CAYNNNNRTG	2 cut(s)	105, 206
SpeI	ACTAGT	1 cut(s)	362
Sse9I	AATT	3 cut(s)	38, 45, 300
SspMI	CTAG	1 cut(s)	363
SstI	GAGCTC	1 cut(s)	179
TaaI	ACNGT	2 cut(s)	88, 272
TaqI	TCGA	2 cut(s)	173, 348
TasI	AATT	3 cut(s)	38, 45, 300
TscAI	CASTG	1 cut(s)	194
TseI	GCWGC	2 cut(s)	119, 255
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	194
VneI	GTGCAC	1 cut(s)	98
XapI	RAATTY	1 cut(s)	38
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.