Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008036

Physical Location & Seq

Genomic Coordinates Reverse (-)

45731368 .. 45732006

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0284100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAAGAATTGAACAAATGGTTGTTAGAAAGGGAGCGTGAAAATATGGAAGAGCTCCAGCGGATTCAAGCTAAAAACTCTCAAGCGGCTGCAATGGTGGCGCAATATCAAATATCGGAGACACCTAGAGGGCGTGGTTCAAGACCTGGCTGTGCCCCAAATGATTATTTTATCGAACGTCCAGTGTACGACGAAGCAGGCTTTCGAAGGAGGTACAGAATGCAAACACATGTCTTCCAACGCATAATGGAGGATCTTTGCAACCTCGATAGTTTTTGGGGGCAAAAATCAGATGCCACTGGAAAAATGGGATTGCTTCCCGAACAAAAAATGACAGGTGCCCTGAGAATGCTTGCGTACGGTGCAGCTGCTGATCAATGTGATGAAATCACTAGAATGGGAGCTTCTACGGCACTGAAATGTCTGAAGAAGTTCTGTAGACAAGTCGAGTTTCTTTACGCTGGGTGGTTCCTTCGTCCTCCAAATCCTGCTGACACTACAAGAGAAAATAGCAAAAGCGAGGAATTTCATTGTGACAACCTAAAATTCGTCGCAAAAGCTTGGCAAATACGAGGAAATTTCAGTTGTCGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0019438 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0080110 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

198

Amino Acids

22.94

Weight (kDa)

8.68

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25460 AT1G68540 AT1G68540
fragaria_vesca	FvH4_4g27430 FvH4_4g27430
malus_domestica	MD13G1042500.v1.1 MD16G1043400.v1.1
prunus_persica	Prupe.1G310300_v2.0.a1
pyrus_communis	pycom13g03700 pycom13g03710 pycom13g03720 pycom16g03750
rosa_chinensis	RchiOBHm_Chr4g0435251
rosa_laevigata	RLG00000006604
rosa_multiflora	Rmu_sc0002132.1_g000069
rosa_roxburghii	Rroxscaffold_5G00376540
rosa_rugosa	Rorug04G0284000 Rorug04G0284100
rosa_samantha	Rh4AG339300 Rh4BG347700 Rh4CG362300 Rh4CG362400 Rh4DG341800
rosa_wichuraiana	Rw4G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	439
AciI	CCGC	2 cut(s)	61, 86
AclWI	GGATC	1 cut(s)	261
AcsI	RAATTY	3 cut(s)	524, 545, 577
AcuI	CTGAAG	1 cut(s)	446
AfaI	GTAC	3 cut(s)	188, 215, 359
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	3 cut(s)	13, 68, 141
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	5 cut(s)	55, 71, 368, 404, 560
AluI	AGCT	5 cut(s)	55, 71, 368, 404, 560
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	261
AlwNI	CAGNNNCTG	1 cut(s)	371
ApeKI	GCWGC	3 cut(s)	89, 365, 368
ApoI	RAATTY	3 cut(s)	524, 545, 577
Asp700I	GAANNNNTTC	1 cut(s)	431
AspLEI	GCGC	1 cut(s)	103
AsuII	TTCGAA	1 cut(s)	205
BaeGI	GKGCMC	2 cut(s)	157, 343
BanI	GGYRCC	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	3 cut(s)	76, 355, 377
BceAI	ACGGC	1 cut(s)	426
BciT130I	CCWGG	1 cut(s)	147
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	2 cut(s)	126, 393
BfmI	CTRYAG	1 cut(s)	436
BisI	GCNGC	4 cut(s)	87, 90, 366, 369
BlsI	GCNGC	4 cut(s)	88, 91, 367, 370
Bme1390I	CCNGG	1 cut(s)	147
BmiI	GGNNCC	2 cut(s)	340, 470
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	283
BpiI	GAAGAC	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	66
Bse1I	ACTGG	2 cut(s)	182, 304
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	2 cut(s)	182, 304
BseSI	GKGCMC	2 cut(s)	157, 343
BseXI	GCAGC	3 cut(s)	76, 355, 377
BseYI	CCCAGC	1 cut(s)	461
BsgI	GTGCAG	1 cut(s)	384
BshNI	GGYRCC	1 cut(s)	338
BsiHKAI	GWGCWC	1 cut(s)	57
BsiWI	CGTACG	1 cut(s)	357
BsmAI	GTCTC	1 cut(s)	113
BsmI	GAATGC	2 cut(s)	225, 354
Bsp119I	TTCGAA	1 cut(s)	205
Bsp1286I	GDGCHC	3 cut(s)	57, 157, 343
Bsp143I	GATC	2 cut(s)	253, 373
BspACI	CCGC	2 cut(s)	61, 86
BspCNI	CTCAG	1 cut(s)	336
BspLI	GGNNCC	2 cut(s)	340, 470
BspPI	GGATC	1 cut(s)	261
BspQI	GCTCTTC	1 cut(s)	45
BspT104I	TTCGAA	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	2 cut(s)	182, 304
BssMI	GATC	2 cut(s)	253, 373
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	45
BstBI	TTCGAA	1 cut(s)	205
BstC8I	GCNNGC	2 cut(s)	199, 354
BstDEI	CTNAG	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	2 cut(s)	256, 376
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	2 cut(s)	253, 373
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 362, 410
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	436
BstSLI	GKGCMC	2 cut(s)	157, 343
BstV1I	GCAGC	3 cut(s)	76, 355, 377
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BtsIMutI	CAGTG	3 cut(s)	189, 297, 413
Cac8I	GCNNGC	2 cut(s)	199, 354
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	1 cut(s)	103
Csp6I	GTAC	3 cut(s)	187, 214, 358
CviAII	CATG	2 cut(s)	230, 594
CviJI	RGCY	8 cut(s)	55, 71, 89, 150, 201, 368, 404, 560
CviKI_1	RGCY	8 cut(s)	55, 71, 89, 150, 201, 368, 404, 560
CviQI	GTAC	3 cut(s)	187, 214, 358
DdeI	CTNAG	1 cut(s)	344
DpnI	GATC	2 cut(s)	255, 375
DpnII	GATC	2 cut(s)	253, 373
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	446
EcoICRI	GAGCTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	2 cut(s)	233, 597
FaiI	YATR	4 cut(s)	47, 231, 245, 595
FatI	CATG	2 cut(s)	229, 593
FbaI	TGATCA	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	439
Fnu4HI	GCNGC	4 cut(s)	87, 90, 366, 369
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	4 cut(s)	87, 90, 366, 369
FspBI	CTAG	2 cut(s)	126, 393
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	4 cut(s)	87, 90, 366, 369
GsaI	CCCAGC	1 cut(s)	465
GsuI	CTGGAG	1 cut(s)	41
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	2 cut(s)	233, 597
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	187, 440
Hpy188I	TCNGA	3 cut(s)	118, 292, 426
Hpy188III	TCNNGA	2 cut(s)	141, 320
Hpy8I	GTNNAC	2 cut(s)	187, 440
Hpy99I	CGWCG	2 cut(s)	194, 554
HpyAV	CCTTC	2 cut(s)	201, 482
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	4 cut(s)	92, 223, 261, 365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 362, 410
HpyF3I	CTNAG	1 cut(s)	344
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	2 cut(s)	233, 597
HspAI	GCGC	1 cut(s)	101
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	253, 373
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	3 cut(s)	34, 60, 401
Lsp1109I	GCAGC	3 cut(s)	76, 355, 377
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	2 cut(s)	126, 393
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	2 cut(s)	255, 375
MboI	GATC	2 cut(s)	253, 373
MboII	GAAGA	4 cut(s)	17, 62, 226, 439
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	3 cut(s)	57, 157, 343
MluCI	AATT	4 cut(s)	8, 524, 545, 577
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	7 cut(s)	122, 204, 244, 275, 489, 514, 566
MroXI	GAANNNNTTC	1 cut(s)	431
MslI	CAYNNNNRTG	2 cut(s)	395, 418
MspA1I	CMGCKG	2 cut(s)	61, 368
MspR9I	CCNGG	1 cut(s)	147
Mva1269I	GAATGC	2 cut(s)	225, 354
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	3 cut(s)	98, 362, 410
NdeII	GATC	2 cut(s)	253, 373
NlaIII	CATG	2 cut(s)	233, 597
NlaIV	GGNNCC	2 cut(s)	340, 470
NmuCI	GTSAC	1 cut(s)	533
NspI	RCATGY	1 cut(s)	233
NspV	TTCGAA	1 cut(s)	205
PciI	ACATGT	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	45
PctI	GAATGC	2 cut(s)	225, 354
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	1 cut(s)	64
Pfl23II	CGTACG	1 cut(s)	357
PkrI	GCNGC	4 cut(s)	88, 91, 367, 370
PscI	ACATGT	1 cut(s)	229
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	145
PspLI	CGTACG	1 cut(s)	357
PspN4I	GGNNCC	2 cut(s)	340, 470
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	3 cut(s)	188, 215, 359
RsaNI	GTAC	3 cut(s)	187, 214, 358
RseI	CAYNNNNRTG	2 cut(s)	395, 418
SacI	GAGCTC	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	45
SatI	GCNGC	4 cut(s)	87, 90, 366, 369
Sau3AI	GATC	2 cut(s)	253, 373
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	3 cut(s)	57, 157, 343
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	436
SfuI	TTCGAA	1 cut(s)	205
SmiMI	CAYNNNNRTG	2 cut(s)	395, 418
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	4 cut(s)	8, 524, 545, 577
SsiI	CCGC	2 cut(s)	61, 86
SspMI	CTAG	2 cut(s)	126, 393
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	4 cut(s)	174, 205, 267, 447
TasI	AATT	4 cut(s)	8, 524, 545, 577
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	64
TscAI	CASTG	3 cut(s)	189, 304, 420
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	3 cut(s)	89, 365, 368
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	2 cut(s)	399, 518
TspRI	CASTG	3 cut(s)	189, 304, 420
XapI	RAATTY	3 cut(s)	524, 545, 577
XceI	RCATGY	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	439
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	2 cut(s)	126, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.