Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008036

Physical Location & Seq

Genomic Coordinates Forward (+)

61911100 .. 61911471

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG362400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGAGGAAAGAAAAGCATCAGGCAGGCTTATATGTTCAAGTTCGGTAGCGCACTGGTCGCAGATCATTGAGATGCTCAAGGCCAAATATCCATCTTATTCATATGAAAGCAAGTGTAGCAGCAAGGAAGGAGACAATAACCCACATAGCATGGACACCACTAAAATTGCTCAACTGGGTTTTCCTCCTTTCAAAACGCTCGAAAAAATGTTTGATGACTGCATCACAAGTTTTCAAGAGAAAGGGTTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0019438 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0080110 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

84

Amino Acids

9.56

Weight (kDa)

6.71

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25460 AT1G68540 AT1G68540
fragaria_vesca	FvH4_4g27430 FvH4_4g27430
malus_domestica	MD13G1042500.v1.1 MD16G1043400.v1.1
prunus_persica	Prupe.1G310300_v2.0.a1
pyrus_communis	pycom13g03700 pycom13g03710 pycom13g03720 pycom16g03750
rosa_chinensis	RchiOBHm_Chr4g0435251
rosa_laevigata	RLG00000006604
rosa_multiflora	Rmu_sc0002132.1_g000069
rosa_roxburghii	Rroxscaffold_5G00376540
rosa_rugosa	Rorug04G0284000 Rorug04G0284100
rosa_samantha	Rh4AG339300 Rh4BG347700 Rh4CG362300 Rh4CG362400 Rh4DG341800
rosa_wichuraiana	Rw4G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	3 cut(s)	39, 193, 236
Alw26I	GTCTC	1 cut(s)	126
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	132
BccI	CCATC	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	126
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
BmrI	ACTGGG	1 cut(s)	185
BmsI	GCATC	3 cut(s)	26, 63, 231
BmuI	ACTGGG	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	59, 180
BseNI	ACTGG	2 cut(s)	59, 180
BseXI	GCAGC	1 cut(s)	132
BshFI	GGCC	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	59, 180
BssMI	GATC	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 117
BstV1I	GCAGC	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	26
CfoI	GCGC	1 cut(s)	52
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	2 cut(s)	28, 83
CviKI_1	RGCY	2 cut(s)	28, 83
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
FaeI	CATG	1 cut(s)	154
FaiI	YATR	6 cut(s)	32, 34, 103, 105, 147, 152
FatI	CATG	1 cut(s)	150
FauNDI	CATATG	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	121
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	1 cut(s)	154
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
Hpy188III	TCNNGA	1 cut(s)	236
HpyAV	CCTTC	1 cut(s)	122
HpyCH4V	TGCA	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 117
Hsp92II	CATG	1 cut(s)	154
HspAI	GCGC	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	63
LpnPI	CCDG	4 cut(s)	6, 10, 40, 161
Lsp1109I	GCAGC	1 cut(s)	132
LweI	GCATC	3 cut(s)	26, 63, 231
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MluCI	AATT	1 cut(s)	165
MnlI	CCTC	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	58, 117
NdeI	CATATG	1 cut(s)	103
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	71
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	1 cut(s)	63
SfaNI	GCATC	3 cut(s)	26, 63, 231
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	165
TscAI	CASTG	1 cut(s)	59
TseI	GCWGC	1 cut(s)	120
TspDTI	ATGAA	2 cut(s)	90, 120
TspRI	CASTG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.