AT1G69380

Uncharacterised ACR, YagE family COG1723

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005702
Physical Location & Seq
Reverse (-)
26081566 .. 26083606
2041 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G69380.1

Sequence Viewer

Length: 1122 bp
ATGGGTAAATGGAGAGCAGTAGCTGCTCTTCTTCTTCGTAATCAATTACTCAATTCTTCAAAAAGACTAAACCTTTCTTCTTCTCCATGTGTTTCGAAACACCCAACGATTGGTTTAGCTTCTCGCTTTCTCAATTTCCGACACTTTTCAGCGTTCCCTTCTCCGATTTCGATTTACAACAATGACTCTGATTCTGGGTCGAATGATGCATATCAAAACTATGAATTTGGAACAGAGGCAGAGGAAGCACTAGGCAAAATCCCTATCAAAGCCTATTTTCTCAGTACTAGTATTGATTTGAAGGCAATGCAAGCTGAGAACTTATGCAATGTTGTTCCTCCTACTTCACGTTCTACTAATTATATTGCCCTCAAATTTTCGGATTTTACCCCTTCTGGAATCTATAGTTTGGACGAGAGGGAGAGTGTAAGCAACTGCAAGTTCATGGTTGTCTTTCAATATGGTTCTGCTATTCTTTTCAATGTTGATGATAATGATGTTGACCGTTATCTCGACATTGTTCGTAGACATGCTTCTGGATTGCTTACAGAAATGAGAAAAGATGATTATGCTGTGAAGGAGAAGCCTTTGCTGATTGAGGAAATGAAAGGTGGCCCTGACTACATTGTTCTCAAAACTTTGGATACTAATAGCATCCGTATAATTGGGAGTGTGCTCGGACAAAGTATTGCTTTGGATTACTCTGTTTCTCAGGTTAACAAGTTGGTGGAAGAGTTTGCTGATATAAACCGTTCAATGGCGAAAACCGGAACATTCACAATGACCAGGAAAAAGCTCTTCCAACTTGTAGGGAAGGCGAATTCTAATATAGCCGATGTGATTCTCAAAGTTGGTTTGTTTGAGAGATCCGAGATTGCTTGGAGAGAAGCTAGATATGCTCAGATATACGAGTACCTAAGAGAAGAGTACGAGATCTCTCAGAGATTTGGGGATCTAGACTATAAGCTAAAGTTTATAGAGCACAACATTCATTTCCTCCAAGAGGTGATGCAGAACCGACAATCAGATCTTTTAGAATGGTGCATTATCTTTTTACTGGCCATTGAAAACGCAATAGGCATTTACGAGATTGTTCGAGAATCCGCAGGAGCTTCACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF155

Protein Analysis

373

Amino Acids

42.34

Weight (kDa)

5.71

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF155 PF02582 149 - 317 6.8e-34 RMND1/Sif2-Sif3/Mrx10, DUF155
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 110
AccI GTMKAC 1 cut(s) 526
AciI CCGC 1 cut(s) 1104
AclWI GGATC 2 cut(s) 861, 960
AcoI YGGCCR 1 cut(s) 1059
AcsI RAATTY 3 cut(s) 224, 374, 820
AfaI GTAC 3 cut(s) 286, 914, 929
AfiI CCNNNNNNNGG 3 cut(s) 110, 757, 1003
AgsI TTSAA 6 cut(s) 60, 301, 458, 481, 756, 1067
AhlI ACTAGT 1 cut(s) 287
AjnI CCWGG 1 cut(s) 785
AluBI AGCT 7 cut(s) 23, 119, 314, 796, 890, 967, 1112
AluI AGCT 7 cut(s) 23, 119, 314, 796, 890, 967, 1112
Alw21I GWGCWC 2 cut(s) 678, 984
AlwI GGATC 2 cut(s) 861, 960
AlwNI CAGNNNCTG 1 cut(s) 23
AoxI GGCC 2 cut(s) 613, 1059
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 3 cut(s) 224, 374, 820
AspS9I GGNCC 1 cut(s) 614
AsuHPI GGTGA 1 cut(s) 1018
AsuII TTCGAA 1 cut(s) 95
BalI TGGCCA 1 cut(s) 1061
BarI GAAGNNNNNNTAC 4 cut(s) 12, 44, 517, 549
Bbv12I GWGCWC 2 cut(s) 678, 984
BbvI GCAGC 1 cut(s) 10
BciT130I CCWGG 1 cut(s) 787
BciVI GTATCC 1 cut(s) 637
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 4 cut(s) 251, 288, 891, 956
BfmI CTRYAG 1 cut(s) 403
BfuI GTATCC 1 cut(s) 637
BglII AGATCT 2 cut(s) 933, 1027
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
BmcAI AGTACT 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 787
BmgT120I GGNCC 1 cut(s) 614
BmrFI CCNGG 1 cut(s) 787
BmsI GCATC 3 cut(s) 196, 663, 999
BplI GAGNNNNNCTC 1 cut(s) 1101
Bpu14I TTCGAA 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 767
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 757, 1003
Bse1I ACTGG 1 cut(s) 1062
Bse3DI GCAATG 2 cut(s) 312, 334
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 1 cut(s) 787
BseGI GGATG 1 cut(s) 654
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 3 cut(s) 110, 757, 1003
BseMI GCAATG 2 cut(s) 312, 334
BseMII CTCAG 5 cut(s) 295, 306, 725, 914, 953
BseNI ACTGG 1 cut(s) 1062
BseXI GCAGC 1 cut(s) 10
BshFI GGCC 2 cut(s) 615, 1061
BsiHKAI GWGCWC 2 cut(s) 678, 984
BsiSI CCGG 1 cut(s) 768
BslI CCNNNNNNNGG 3 cut(s) 110, 757, 1003
BsnI GGCC 2 cut(s) 615, 1061
Bsp119I TTCGAA 1 cut(s) 95
Bsp1286I GDGCHC 2 cut(s) 678, 984
Bsp143I GATC 4 cut(s) 866, 933, 952, 1027
BspACI CCGC 1 cut(s) 1104
BspANI GGCC 2 cut(s) 615, 1061
BspCNI CTCAG 5 cut(s) 294, 307, 724, 913, 952
BspPI GGATC 2 cut(s) 861, 960
BspQI GCTCTTC 2 cut(s) 33, 803
BspT104I TTCGAA 1 cut(s) 95
BsrDI GCAATG 2 cut(s) 312, 334
BsrI ACTGG 1 cut(s) 1062
BssMI GATC 4 cut(s) 866, 933, 952, 1027
Bst2UI CCWGG 1 cut(s) 787
Bst4CI ACNGT 2 cut(s) 506, 752
Bst6I CTCTTC 4 cut(s) 33, 726, 803, 918
BstAPI GCANNNNNTGC 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 6 cut(s) 281, 315, 711, 900, 917, 939
BstENI CCTNNNNNAGG 1 cut(s) 1001
BstF5I GGATG 1 cut(s) 654
BstKTI GATC 4 cut(s) 869, 936, 955, 1030
BstMBI GATC 4 cut(s) 866, 933, 952, 1027
BstMWI GCNNNNNNNGC 4 cut(s) 23, 245, 311, 896
BstNI CCWGG 1 cut(s) 787
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 1 cut(s) 785
BstSFI CTRYAG 1 cut(s) 403
BstV1I GCAGC 1 cut(s) 10
BstX2I RGATCY 4 cut(s) 866, 933, 952, 1027
BstYI RGATCY 4 cut(s) 866, 933, 952, 1027
BsuI GTATCC 1 cut(s) 637
BsuRI GGCC 2 cut(s) 615, 1061
BtsCI GGATG 1 cut(s) 654
Cac8I GCNNGC 1 cut(s) 312
CaiI CAGNNNCTG 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 614
Csp6I GTAC 3 cut(s) 285, 913, 928
CviAII CATG 3 cut(s) 87, 445, 530
CviQI GTAC 3 cut(s) 285, 913, 928
DdeI CTNAG 6 cut(s) 281, 315, 711, 900, 917, 939
DpnI GATC 4 cut(s) 868, 935, 954, 1029
DpnII GATC 4 cut(s) 866, 933, 952, 1027
EaeI YGGCCR 1 cut(s) 1059
Eam1104I CTCTTC 4 cut(s) 33, 726, 803, 918
EarI CTCTTC 4 cut(s) 33, 726, 803, 918
EcoNI CCTNNNNNAGG 1 cut(s) 1001
EcoRI GAATTC 1 cut(s) 820
EcoRII CCWGG 1 cut(s) 785
EcoT22I ATGCAT 1 cut(s) 211
FaeI CATG 3 cut(s) 90, 448, 533
FalI AAGNNNNNCTT 2 cut(s) 676, 708
FatI CATG 3 cut(s) 86, 444, 529
FblI GTMKAC 1 cut(s) 526
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 1 cut(s) 641
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 4 cut(s) 251, 288, 891, 956
GluI GCNGC 1 cut(s) 24
HaeIII GGCC 2 cut(s) 615, 1061
HapII CCGG 1 cut(s) 768
Hin1II CATG 3 cut(s) 90, 448, 533
HincII GTYRAC 2 cut(s) 502, 718
HindII GTYRAC 2 cut(s) 502, 718
HinfI GANTC 5 cut(s) 185, 191, 399, 841, 1100
HpaI GTTAAC 1 cut(s) 718
HpaII CCGG 1 cut(s) 768
HphI GGTGA 1 cut(s) 1018
Hpy166II GTNNAC 3 cut(s) 502, 527, 718
Hpy188III TCNNGA 5 cut(s) 396, 512, 537, 956, 1097
Hpy8I GTNNAC 3 cut(s) 502, 527, 718
HpyAV CCTTC 5 cut(s) 168, 295, 402, 571, 808
HpyCH4III ACNGT 2 cut(s) 506, 752
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 6 cut(s) 209, 310, 327, 438, 1012, 1044
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 245, 311, 896
HpyF3I CTNAG 6 cut(s) 281, 315, 711, 900, 917, 939
HpySE526I ACGT 1 cut(s) 349
Hsp92II CATG 3 cut(s) 90, 448, 533
KspAI GTTAAC 1 cut(s) 718
Kzo9I GATC 4 cut(s) 866, 933, 952, 1027
LguI GCTCTTC 2 cut(s) 33, 803
LmnI GCTCC 1 cut(s) 1109
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 3 cut(s) 196, 663, 999
MaeI CTAG 4 cut(s) 251, 288, 891, 956
MaeII ACGT 1 cut(s) 349
MalI GATC 4 cut(s) 868, 935, 954, 1029
MboI GATC 4 cut(s) 866, 933, 952, 1027
MboII GAAGA 9 cut(s) 20, 23, 26, 48, 69, 72, 743, 790, 935
MflI RGATCY 4 cut(s) 866, 933, 952, 1027
MhlI GDGCHC 2 cut(s) 678, 984
MlsI TGGCCA 1 cut(s) 1061
MluCI AATT 8 cut(s) 44, 52, 133, 224, 358, 374, 663, 820
MluNI TGGCCA 1 cut(s) 1061
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 2 cut(s) 163, 826
MnlI CCTC 8 cut(s) 229, 235, 348, 380, 411, 592, 997, 1007
Mox20I TGGCCA 1 cut(s) 1061
Mph1103I ATGCAT 1 cut(s) 211
MscI TGGCCA 1 cut(s) 1061
MseI TTAA 1 cut(s) 717
Msp20I TGGCCA 1 cut(s) 1061
MspI CCGG 1 cut(s) 768
MspR9I CCNGG 1 cut(s) 787
MvaI CCWGG 1 cut(s) 787
MwoI GCNNNNNNNGC 4 cut(s) 23, 245, 311, 896
NdeII GATC 4 cut(s) 866, 933, 952, 1027
NlaIII CATG 3 cut(s) 90, 448, 533
NsiI ATGCAT 1 cut(s) 211
NspI RCATGY 1 cut(s) 533
NspV TTCGAA 1 cut(s) 95
PciSI GCTCTTC 2 cut(s) 33, 803
PfeI GAWTC 4 cut(s) 191, 399, 841, 1100
PflMI CCANNNNNTGG 1 cut(s) 110
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 785
PspGI CCWGG 1 cut(s) 785
PspPI GGNCC 1 cut(s) 614
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 4 cut(s) 866, 933, 952, 1027
RsaI GTAC 3 cut(s) 286, 914, 929
RsaNI GTAC 3 cut(s) 285, 913, 928
SapI GCTCTTC 2 cut(s) 33, 803
SaqAI TTAA 1 cut(s) 717
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 4 cut(s) 866, 933, 952, 1027
Sau96I GGNCC 1 cut(s) 614
ScaI AGTACT 1 cut(s) 286
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 787
SduI GDGCHC 2 cut(s) 678, 984
SfaNI GCATC 3 cut(s) 196, 663, 999
SfcI CTRYAG 1 cut(s) 403
SfuI TTCGAA 1 cut(s) 95
SpeI ACTAGT 1 cut(s) 287
Sse9I AATT 8 cut(s) 44, 52, 133, 224, 358, 374, 663, 820
SsiI CCGC 1 cut(s) 1104
SspMI CTAG 4 cut(s) 251, 288, 891, 956
StyD4I CCNGG 1 cut(s) 785
TaaI ACNGT 2 cut(s) 506, 752
TaiI ACGT 1 cut(s) 352
TaqI TCGA 5 cut(s) 95, 170, 200, 513, 1096
TasI AATT 8 cut(s) 44, 52, 133, 224, 358, 374, 663, 820
TatI WGTACW 1 cut(s) 284
TfiI GAWTC 4 cut(s) 191, 399, 841, 1100
Tru1I TTAA 1 cut(s) 717
Tru9I TTAA 1 cut(s) 717
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 4 cut(s) 237, 433, 620, 980
TspGWI ACGGA 1 cut(s) 647
Van91I CCANNNNNTGG 1 cut(s) 110
XagI CCTNNNNNAGG 1 cut(s) 1001
XapI RAATTY 3 cut(s) 224, 374, 820
XbaI TCTAGA 1 cut(s) 955
XceI RCATGY 1 cut(s) 533
XmiI GTMKAC 1 cut(s) 526
XspI CTAG 4 cut(s) 251, 288, 891, 956
ZrmI AGTACT 1 cut(s) 286
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.