Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005702

Physical Location & Seq

Genomic Coordinates Reverse (-)

3874401 .. 3877391

Gene Structure 2991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05900.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGGAGGTGGAGAGCCGCTGCTTCTCTTCTCCTCAGCCGCGTAGCCGCCGCCGGAGCTTCTAAATCATCCGTTCCCGCCAAGCCTCCTTTCCATATACACTGCCCTTCAGCCTCCACCTCCTTCCACTTCCGCTTCCTCAATTCACGACCTTTCTCTGCAATCCCGTCTCGGATTTCCTTTGAAGCCAATGATCACGACTCTGAGCCGCCCTGCTACGCTCGGAGTCAGAGCCAAGCTAAGGACGACGAAGAAACGGGAAAAATACCTATTAAAGCCTACTTCCTTTGTACCAGTATCAATTTGAAGAGCATGCAAGCCGAGAATTTAATCAATGTCATTCCTCCTTCTTCTCGCTCATCGAATTACATTGCTCTCAGATTTTGCGATTTCCCTTCAGAAAATACTGAATTTGGAGTCTGGCGTTATATGGTCGTATTTCAGTATGGATCTGCTGTTCTGTTTAATGTTGAGGATCGTGAAGTTGATGGTTATCTGGATCTAGTTACAAGACATGCTTCTGGATTACTTCCAGAGATGAGAAAAGACGATTATGCTGTAAAAGAAAAGCCACAGCTGGATGAGGACATGCAGGGTGGCCCAGACTACATAGTTCTTAAGACTTTGGACACTGATTCTATTCGCATTATTGGCAGTGTGCTTGGCCAAAGTATTGCTTTAGATTATTTTGTTTCGCAGGTTGATGGTATGGTTGAAGAGTTTGCAGATATAAATCGTGGAATGGAGAAAACTGGAACATTCACAATGCACAAAAAGAAGCTCCTTCAACTTGTTGGGAAGGCAAACTCAAACTTAGCCGATGTAATTCTTAAAGTTGGTCTTTTTGAGAGATCAGAAATTGCTTGGAGGGATGCAAAGTACGCTCAAATACATGAGTACCTTCGGGAGGAGTACGAGGTTACACAACGCTTTGGAAACTTGGATTTCAAGTTAAAGTTTGTAGAGCACAACATTCATTTCTTGCAAGAAGTCCTTCAAAACAGAAAGTCGGATCTTCTGGAATGGTGCATCATCTTCCTGTTGAGCATAGAAAACATAATATCACTATACGAGATTGTTCGTGATTCAGCTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF155

Protein Analysis

367

Amino Acids

41.52

Weight (kDa)

5.67

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69380
fragaria_vesca	FvH4_4g30570 FvH4_4g30570 FvH4_4g30570 FvH4_4g30570 FvH4_4g30570
malus_domestica	MD13G1066700.v1.1 MD16G1065900.v1.1
prunus_persica	Prupe.1G281200_v2.0.a1 Prupe.1G281200_v2.0.a1 Prupe.1G281200_v2.0.a1 Prupe.1G281200_v2.0.a1
pyrus_communis	pycom13g05900 pycom16g05750
rosa_chinensis	RchiOBHm_Chr4g0438971
rosa_laevigata	RLG00000006314
rosa_multiflora	Rmu_sc0005887.1_g000006 Rmu_sc0023005.1_g000004 Rmu_sc0023254.1_g000002 Rmu_sc0030201.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379980
rosa_rugosa	Rorug04G0314800
rosa_samantha	Rh4AG365400 Rh4BG376600 Rh4CG390700 Rh4DG371300
rosa_wichuraiana	Rw0G007370 Rw0G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	688
AccII	CGCG	1 cut(s)	42
AciI	CCGC	7 cut(s)	18, 40, 48, 51, 78, 133, 209
AclWI	GGATC	4 cut(s)	457, 483, 507, 1020
AcoI	YGGCCR	1 cut(s)	664
AcsI	RAATTY	2 cut(s)	325, 410
AcuI	CTGAAG	2 cut(s)	93, 381
AfaI	GTAC	4 cut(s)	292, 881, 899, 914
AfiI	CCNNNNNNNGG	2 cut(s)	241, 907
AflII	CTTAAG	1 cut(s)	617
AgsI	TTSAA	6 cut(s)	185, 307, 716, 788, 949, 998
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AloI	GAACNNNNNNTCC	2 cut(s)	441, 473
AluBI	AGCT	6 cut(s)	59, 239, 577, 781, 1091, 1097
AluI	AGCT	6 cut(s)	59, 239, 577, 781, 1091, 1097
Alw21I	GWGCWC	1 cut(s)	969
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	4 cut(s)	457, 483, 507, 1020
AoxI	GGCC	2 cut(s)	598, 664
ApeKI	GCWGC	3 cut(s)	20, 1091, 1094
ApoI	RAATTY	2 cut(s)	325, 410
Asp700I	GAANNNNTTC	1 cut(s)	993
AspS9I	GGNCC	1 cut(s)	599
BaeI	ACNNNNGTAYC	2 cut(s)	881, 914
BalI	TGGCCA	1 cut(s)	666
Bbv12I	GWGCWC	1 cut(s)	969
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	7, 1078
BccI	CCATC	2 cut(s)	482, 698
BclI	TGATCA	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	503
BfmI	CTRYAG	1 cut(s)	1092
BfrI	CTTAAG	1 cut(s)	617
BfuAI	ACCTGC	1 cut(s)	688
BisI	GCNGC	8 cut(s)	18, 21, 40, 48, 51, 209, 1092, 1095
BlsI	GCNGC	8 cut(s)	19, 22, 41, 49, 52, 210, 1093, 1096
BmgT120I	GGNCC	1 cut(s)	599
BmsI	GCATC	2 cut(s)	862, 1038
Bpu10I	CCTNAGC	2 cut(s)	35, 240
BsaBI	GATNNNNATC	2 cut(s)	492, 732
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 907
Bse1I	ACTGG	2 cut(s)	294, 757
Bse3DI	GCAATG	1 cut(s)	369
Bse8I	GATNNNNATC	2 cut(s)	492, 732
BseGI	GGATG	3 cut(s)	68, 586, 877
BseJI	GATNNNNATC	2 cut(s)	492, 732
BseLI	CCNNNNNNNGG	2 cut(s)	241, 907
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	3 cut(s)	49, 195, 391
BseNI	ACTGG	2 cut(s)	294, 757
BseRI	GAGGAG	2 cut(s)	23, 923
BseXI	GCAGC	2 cut(s)	7, 1078
Bsh1236I	CGCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	600, 666
BsiHKAI	GWGCWC	1 cut(s)	969
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	241, 907
BsmAI	GTCTC	1 cut(s)	174
BsmBI	CGTCTC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	600, 666
Bsp1286I	GDGCHC	1 cut(s)	969
Bsp143I	GATC	6 cut(s)	193, 449, 475, 499, 851, 1012
BspACI	CCGC	7 cut(s)	18, 40, 48, 51, 78, 133, 209
BspANI	GGCC	2 cut(s)	600, 666
BspCNI	CTCAG	3 cut(s)	48, 196, 390
BspFNI	CGCG	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	1096
BspMI	ACCTGC	1 cut(s)	688
BspPI	GGATC	4 cut(s)	457, 483, 507, 1020
BspQI	GCTCTTC	1 cut(s)	302
BspTI	CTTAAG	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	294, 757
BssMI	GATC	6 cut(s)	193, 449, 475, 499, 851, 1012
Bst6I	CTCTTC	3 cut(s)	33, 302, 711
BstAFI	CTTAAG	1 cut(s)	617
BstC8I	GCNNGC	2 cut(s)	314, 318
BstDEI	CTNAG	5 cut(s)	35, 204, 240, 377, 814
BstENI	CCTNNNNNAGG	1 cut(s)	905
BstF5I	GGATG	3 cut(s)	68, 586, 877
BstFNI	CGCG	1 cut(s)	42
BstKTI	GATC	6 cut(s)	196, 452, 478, 502, 854, 1015
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	6 cut(s)	193, 449, 475, 499, 851, 1012
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 651, 881
BstNSI	RCATGY	3 cut(s)	316, 518, 592
BstSFI	CTRYAG	1 cut(s)	1092
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	2 cut(s)	7, 1078
BstX2I	RGATCY	3 cut(s)	449, 499, 1012
BstYI	RGATCY	3 cut(s)	449, 499, 1012
BsuRI	GGCC	2 cut(s)	600, 666
BtsCI	GGATG	3 cut(s)	68, 586, 877
BtsI	GCAGTG	2 cut(s)	100, 661
BtsIMutI	CAGTG	3 cut(s)	100, 630, 661
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	2 cut(s)	314, 318
Cfr13I	GGNCC	1 cut(s)	599
Csp6I	GTAC	4 cut(s)	291, 880, 898, 913
CviAII	CATG	4 cut(s)	313, 515, 589, 893
CviQI	GTAC	4 cut(s)	291, 880, 898, 913
DdeI	CTNAG	5 cut(s)	35, 204, 240, 377, 814
DpnI	GATC	6 cut(s)	195, 451, 477, 501, 853, 1014
DpnII	GATC	6 cut(s)	193, 449, 475, 499, 851, 1012
EaeI	YGGCCR	1 cut(s)	664
Eam1104I	CTCTTC	3 cut(s)	33, 302, 711
EarI	CTCTTC	3 cut(s)	33, 302, 711
Eco57I	CTGAAG	2 cut(s)	93, 381
EcoNI	CCTNNNNNAGG	1 cut(s)	905
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	4 cut(s)	316, 518, 592, 896
FalI	AAGNNNNNCTT	8 cut(s)	502, 534, 661, 693, 825, 857, 978, 1010
FatI	CATG	4 cut(s)	312, 514, 588, 892
FauI	CCCGC	1 cut(s)	85
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	8 cut(s)	18, 21, 40, 48, 51, 209, 1092, 1095
FokI	GGATG	3 cut(s)	55, 593, 884
Fsp4HI	GCNGC	8 cut(s)	18, 21, 40, 48, 51, 209, 1092, 1095
FspBI	CTAG	1 cut(s)	503
GluI	GCNGC	8 cut(s)	18, 21, 40, 48, 51, 209, 1092, 1095
HaeIII	GGCC	2 cut(s)	600, 666
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	4 cut(s)	316, 518, 592, 896
HinfI	GANTC	5 cut(s)	200, 226, 417, 635, 1085
HpaII	CCGG	1 cut(s)	54
Hpy188I	TCNGA	8 cut(s)	174, 205, 225, 231, 380, 400, 856, 1012
Hpy188III	TCNNGA	9 cut(s)	147, 197, 479, 497, 522, 533, 905, 1019, 1082
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	8 cut(s)	117, 133, 357, 405, 793, 794, 911, 1004
HpyCH4V	TGCA	9 cut(s)	161, 316, 592, 725, 769, 875, 985, 1029, 1094
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 651, 881
HpyF3I	CTNAG	5 cut(s)	35, 204, 240, 377, 814
Hsp92II	CATG	4 cut(s)	316, 518, 592, 896
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	6 cut(s)	193, 449, 475, 499, 851, 1012
LguI	GCTCTTC	1 cut(s)	302
LmnI	GCTCC	2 cut(s)	56, 786
Lsp1109I	GCAGC	2 cut(s)	7, 1078
LweI	GCATC	2 cut(s)	862, 1038
MaeI	CTAG	1 cut(s)	503
MaeIII	GTNAC	2 cut(s)	505, 919
MalI	GATC	6 cut(s)	195, 451, 477, 501, 853, 1014
MboI	GATC	6 cut(s)	193, 449, 475, 499, 851, 1012
MboII	GAAGA	7 cut(s)	20, 263, 319, 342, 728, 1007, 1027
MflI	RGATCY	3 cut(s)	449, 499, 1012
MhlI	GDGCHC	1 cut(s)	969
MlsI	TGGCCA	1 cut(s)	666
MluCI	AATT	7 cut(s)	142, 301, 325, 364, 410, 825, 858
MluNI	TGGCCA	1 cut(s)	666
MlyI	GAGTC	3 cut(s)	194, 235, 426
MmeI	TCCRAC	1 cut(s)	990
Mox20I	TGGCCA	1 cut(s)	666
MroXI	GAANNNNTTC	1 cut(s)	993
MscI	TGGCCA	1 cut(s)	666
MseI	TTAA	7 cut(s)	273, 329, 465, 618, 831, 953, 1099
Msp20I	TGGCCA	1 cut(s)	666
MspA1I	CMGCKG	3 cut(s)	20, 577, 1091
MspCI	CTTAAG	1 cut(s)	617
MspI	CCGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	3 cut(s)	56, 651, 881
NdeII	GATC	6 cut(s)	193, 449, 475, 499, 851, 1012
NlaIII	CATG	4 cut(s)	316, 518, 592, 896
NmeAIII	GCCGAG	1 cut(s)	346
NspI	RCATGY	3 cut(s)	316, 518, 592
PaeI	GCATGC	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	993
PfeI	GAWTC	2 cut(s)	635, 1085
PkrI	GCNGC	8 cut(s)	19, 22, 41, 49, 52, 210, 1093, 1096
PleI	GAGTC	3 cut(s)	194, 234, 425
PpsI	GAGTC	3 cut(s)	194, 234, 425
PspPI	GGNCC	1 cut(s)	599
PstI	CTGCAG	1 cut(s)	1096
PsuI	RGATCY	3 cut(s)	449, 499, 1012
PvuII	CAGCTG	2 cut(s)	577, 1091
RsaI	GTAC	4 cut(s)	292, 881, 899, 914
RsaNI	GTAC	4 cut(s)	291, 880, 898, 913
SapI	GCTCTTC	1 cut(s)	302
SaqAI	TTAA	7 cut(s)	273, 329, 465, 618, 831, 953, 1099
SatI	GCNGC	8 cut(s)	18, 21, 40, 48, 51, 209, 1092, 1095
Sau3AI	GATC	6 cut(s)	193, 449, 475, 499, 851, 1012
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	3 cut(s)	194, 235, 426
SduI	GDGCHC	1 cut(s)	969
SfaNI	GCATC	2 cut(s)	862, 1038
SfcI	CTRYAG	1 cut(s)	1092
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SphI	GCATGC	1 cut(s)	316
Sse9I	AATT	7 cut(s)	142, 301, 325, 364, 410, 825, 858
SsiI	CCGC	7 cut(s)	18, 40, 48, 51, 78, 133, 209
SspMI	CTAG	1 cut(s)	503
TaqI	TCGA	1 cut(s)	362
TasI	AATT	7 cut(s)	142, 301, 325, 364, 410, 825, 858
TauI	GCSGC	5 cut(s)	20, 42, 50, 53, 211
TfiI	GAWTC	2 cut(s)	635, 1085
Tru1I	TTAA	7 cut(s)	273, 329, 465, 618, 831, 953, 1099
Tru9I	TTAA	7 cut(s)	273, 329, 465, 618, 831, 953, 1099
TscAI	CASTG	3 cut(s)	107, 637, 661
TseI	GCWGC	3 cut(s)	20, 1091, 1094
TspDTI	ATGAA	1 cut(s)	965
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	3 cut(s)	107, 637, 661
Vha464I	CTTAAG	1 cut(s)	617
XagI	CCTNNNNNAGG	1 cut(s)	905
XapI	RAATTY	2 cut(s)	325, 410
XceI	RCATGY	3 cut(s)	316, 518, 592
XmnI	GAANNNNTTC	1 cut(s)	993
XspI	CTAG	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.