Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023254.1

Orthogroup ID

OG0005702

Physical Location & Seq

Genomic Coordinates Forward (+)

6937 .. 9660

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023254.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atggggagatggagagcagcttctcttctcctcaggaacatagccataaccaccacaccacccaaatcttcttctcttcttttcaagcctctcactctctcacgctcttcttcaatccccacttcccaattctacatcttcctcaagtctaggcctctctctgcaatcccatctcgggtctcaattgacccgactgatttcgaatccgggccggcctattgcgctcatgaacaacccaatgaagacgacgaaaccgggaaaatccccattaaggcgtatttcctttgcaccagtatcaatttgaagagcatgcaggccgagtatttaagcaatgtcattcctccttcgtctcgctcaaccaattatattgcactcagattttgtgatttcccttcggaaaatagtagatttggagtatgggagaatccaagctcctggcgctacatggtagtattccagtatggatcaactgttctgtttaatgttgaggagcatgaagttcaggcttacctaaatctagtcataagacatgcttctggaatgctacgagagatggtgaaagacgattatgctgtaaaagagaagcctcagctggtcgacgatatgcagggtgggccagactacatagttcttagaactttggacacggatagtatccgcattattggaagtgtgcttggccaaagtattgctttagattattttgtttcgcaggttgatggtatggttgaagagtttgcagatataaatcgaggaatggaaaaaactggaacttttaccatgcataaaaagaagctccttcaactcgttggaaaggctaactcaactctagctgatgtaattgtcaaagttggtctatttgagagatcagaaattgcttggagggatgcaaagtatgctaaaatacatgaatacctgagggaggagtatgaggttacgcagcgatttggaaacttggatttcaagttaaaatttgtagagcacaacattcatttcttgcaagaagtcctacaaaacagaaagtctgatcttctggaatggtgcatcatcttcctgttgactgtagagaatattatatcactatacgagattgttcgtgattcaggtgcagtttctgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF155

Protein Analysis

373

Amino Acids

42.5

Weight (kDa)

5.89

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69380
fragaria_vesca	FvH4_4g30570 FvH4_4g30570 FvH4_4g30570 FvH4_4g30570 FvH4_4g30570
malus_domestica	MD13G1066700.v1.1 MD16G1065900.v1.1
prunus_persica	Prupe.1G281200_v2.0.a1 Prupe.1G281200_v2.0.a1 Prupe.1G281200_v2.0.a1 Prupe.1G281200_v2.0.a1
pyrus_communis	pycom13g05900 pycom16g05750
rosa_chinensis	RchiOBHm_Chr4g0438971
rosa_laevigata	RLG00000006314
rosa_multiflora	Rmu_sc0005887.1_g000006 Rmu_sc0023005.1_g000004 Rmu_sc0023254.1_g000002 Rmu_sc0030201.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379980
rosa_rugosa	Rorug04G0314800
rosa_samantha	Rh4AG365400 Rh4BG376600 Rh4CG390700 Rh4DG371300
rosa_wichuraiana	Rw0G007370 Rw0G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	703
AccI	GTMKAC	1 cut(s)	597
AciI	CCGC	1 cut(s)	658
AclWI	GGATC	1 cut(s)	472
AcoI	YGGCCR	1 cut(s)	679
AcsI	RAATTY	1 cut(s)	971
AfiI	CCNNNNNNNGG	3 cut(s)	175, 271, 922
AgsI	TTSAA	6 cut(s)	85, 114, 304, 731, 803, 964
AjnI	CCWGG	1 cut(s)	434
AloI	GAACNNNNNNTCC	2 cut(s)	456, 488
AluBI	AGCT	5 cut(s)	20, 432, 592, 796, 833
AluI	AGCT	5 cut(s)	20, 432, 592, 796, 833
Alw21I	GWGCWC	1 cut(s)	984
Alw26I	GTCTC	2 cut(s)	184, 354
AlwI	GGATC	1 cut(s)	472
AlwNI	CAGNNNCTG	1 cut(s)	1115
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	6 cut(s)	152, 209, 213, 315, 614, 679
ApeKI	GCWGC	2 cut(s)	17, 940
ApoI	RAATTY	1 cut(s)	971
AspLEI	GCGC	2 cut(s)	224, 441
AspS9I	GGNCC	2 cut(s)	209, 614
AsuC2I	CCSGG	2 cut(s)	208, 256
AsuHPI	GGTGA	1 cut(s)	568
AsuII	TTCGAA	1 cut(s)	201
AvaI	CYCGRG	1 cut(s)	174
AxyI	CCTNAGG	2 cut(s)	32, 917
BalI	TGGCCA	1 cut(s)	681
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	984
BbvCI	CCTCAGC	1 cut(s)	588
BbvI	GCAGC	2 cut(s)	29, 952
BccI	CCATC	4 cut(s)	3, 178, 547, 713
BciT130I	CCWGG	1 cut(s)	436
BciVI	GTATCC	1 cut(s)	665
BcnI	CCSGG	2 cut(s)	208, 256
BcoDI	GTCTC	2 cut(s)	184, 354
BfaI	CTAG	3 cut(s)	150, 518, 830
BfmI	CTRYAG	1 cut(s)	1062
BfoI	RGCGCY	1 cut(s)	442
BfuAI	ACCTGC	1 cut(s)	703
BfuI	GTATCC	1 cut(s)	665
BisI	GCNGC	2 cut(s)	18, 941
BlsI	GCNGC	2 cut(s)	19, 942
Bme1390I	CCNGG	3 cut(s)	208, 256, 436
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	2 cut(s)	209, 614
BmrFI	CCNGG	3 cut(s)	208, 256, 436
BmsI	GCATC	2 cut(s)	877, 1053
BpiI	GAAGAC	1 cut(s)	249
Bpu10I	CCTNAGC	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	2 cut(s)	208, 256
BsaBI	GATNNNNATC	1 cut(s)	747
BsaI	GGTCTC	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 271, 922
Bse118I	RCCGGY	1 cut(s)	211
Bse1I	ACTGG	3 cut(s)	291, 457, 772
Bse21I	CCTNAGG	2 cut(s)	32, 917
Bse3DI	GCAATG	1 cut(s)	337
Bse8I	GATNNNNATC	1 cut(s)	747
BseBI	CCWGG	1 cut(s)	436
BseGI	GGATG	1 cut(s)	892
BseJI	GATNNNNATC	1 cut(s)	747
BseLI	CCNNNNNNNGG	3 cut(s)	175, 271, 922
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	4 cut(s)	46, 388, 602, 908
BseNI	ACTGG	3 cut(s)	291, 457, 772
BseRI	GAGGAG	3 cut(s)	20, 503, 938
BseXI	GCAGC	2 cut(s)	29, 952
BshFI	GGCC	6 cut(s)	154, 211, 215, 317, 616, 681
BsiHKAI	GWGCWC	1 cut(s)	984
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	3 cut(s)	207, 212, 255
BslI	CCNNNNNNNGG	3 cut(s)	175, 271, 922
BsmAI	GTCTC	2 cut(s)	184, 354
BsmBI	CGTCTC	1 cut(s)	354
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	6 cut(s)	154, 211, 215, 317, 616, 681
Bso31I	GGTCTC	1 cut(s)	184
BsoBI	CYCGRG	1 cut(s)	174
Bsp119I	TTCGAA	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	984
Bsp143I	GATC	3 cut(s)	464, 866, 1027
BspACI	CCGC	1 cut(s)	658
BspANI	GGCC	6 cut(s)	154, 211, 215, 317, 616, 681
BspCNI	CTCAG	4 cut(s)	45, 387, 601, 909
BspHI	TCATGA	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	703
BspPI	GGATC	1 cut(s)	472
BspQI	GCTCTTC	2 cut(s)	112, 299
BspT104I	TTCGAA	1 cut(s)	201
BspTNI	GGTCTC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	211
BsrI	ACTGG	3 cut(s)	291, 457, 772
BssAI	RCCGGY	1 cut(s)	211
BssMI	GATC	3 cut(s)	464, 866, 1027
Bst2UI	CCWGG	1 cut(s)	436
Bst4CI	ACNGT	2 cut(s)	472, 1063
Bst6I	CTCTTC	5 cut(s)	30, 81, 112, 299, 726
BstAPI	GCANNNNNTGC	1 cut(s)	896
BstBI	TTCGAA	1 cut(s)	201
BstC8I	GCNNGC	3 cut(s)	213, 311, 315
BstDEI	CTNAG	5 cut(s)	32, 374, 588, 632, 917
BstENI	CCTNNNNNAGG	1 cut(s)	920
BstF5I	GGATG	1 cut(s)	892
BstH2I	RGCGCY	1 cut(s)	442
BstHHI	GCGC	2 cut(s)	224, 441
BstKTI	GATC	3 cut(s)	467, 869, 1030
BstMAI	GTCTC	2 cut(s)	184, 354
BstMBI	GATC	3 cut(s)	464, 866, 1027
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 438, 613, 896
BstNI	CCWGG	1 cut(s)	436
BstNSI	RCATGY	2 cut(s)	313, 533
BstSCI	CCNGG	3 cut(s)	206, 254, 434
BstSFI	CTRYAG	1 cut(s)	1062
BstV1I	GCAGC	2 cut(s)	29, 952
BstV2I	GAAGAC	1 cut(s)	249
BstXI	CCANNNNNNTGG	1 cut(s)	435
Bsu36I	CCTNAGG	2 cut(s)	32, 917
BsuI	GTATCC	1 cut(s)	665
BsuRI	GGCC	6 cut(s)	154, 211, 215, 317, 616, 681
BtsCI	GGATG	1 cut(s)	892
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	3 cut(s)	213, 311, 315
CaiI	CAGNNNCTG	1 cut(s)	1115
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	2 cut(s)	224, 441
Cfr10I	RCCGGY	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	209, 614
CviAII	CATG	7 cut(s)	227, 310, 445, 494, 530, 781, 908
DdeI	CTNAG	5 cut(s)	32, 374, 588, 632, 917
DpnI	GATC	3 cut(s)	466, 868, 1029
DpnII	GATC	3 cut(s)	464, 866, 1027
EaeI	YGGCCR	1 cut(s)	679
Eam1104I	CTCTTC	5 cut(s)	30, 81, 112, 299, 726
EarI	CTCTTC	5 cut(s)	30, 81, 112, 299, 726
Eco147I	AGGCCT	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	184
Eco81I	CCTNAGG	2 cut(s)	32, 917
Eco88I	CYCGRG	1 cut(s)	174
EcoNI	CCTNNNNNAGG	1 cut(s)	920
EcoRII	CCWGG	1 cut(s)	434
EcoT22I	ATGCAT	1 cut(s)	786
Esp3I	CGTCTC	1 cut(s)	354
FaeI	CATG	7 cut(s)	230, 313, 448, 497, 533, 784, 911
FalI	AAGNNNNNCTT	4 cut(s)	517, 549, 676, 708
FatI	CATG	7 cut(s)	226, 309, 444, 493, 529, 780, 907
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	2 cut(s)	18, 941
FokI	GGATG	1 cut(s)	899
FseI	GGCCGGCC	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	18, 941
FspBI	CTAG	3 cut(s)	150, 518, 830
GlaI	GCGC	2 cut(s)	223, 440
GluI	GCNGC	2 cut(s)	18, 941
HaeII	RGCGCY	1 cut(s)	442
HaeIII	GGCC	6 cut(s)	154, 211, 215, 317, 616, 681
HapII	CCGG	3 cut(s)	207, 212, 255
HhaI	GCGC	2 cut(s)	224, 441
Hin1II	CATG	7 cut(s)	230, 313, 448, 497, 533, 784, 911
Hin6I	GCGC	2 cut(s)	222, 439
HinP1I	GCGC	2 cut(s)	222, 439
HincII	GTYRAC	2 cut(s)	598, 1059
HindII	GTYRAC	2 cut(s)	598, 1059
HinfI	GANTC	3 cut(s)	203, 424, 1100
HpaII	CCGG	3 cut(s)	207, 212, 255
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	2 cut(s)	598, 1059
Hpy188I	TCNGA	4 cut(s)	377, 397, 871, 1027
Hpy188III	TCNNGA	5 cut(s)	34, 227, 537, 1034, 1097
Hpy8I	GTNNAC	2 cut(s)	598, 1059
Hpy99I	CGWCG	2 cut(s)	251, 602
HpyAV	CCTTC	3 cut(s)	354, 402, 809
HpyCH4III	ACNGT	2 cut(s)	472, 1063
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 438, 613, 896
HpyF3I	CTNAG	5 cut(s)	32, 374, 588, 632, 917
Hsp92II	CATG	7 cut(s)	230, 313, 448, 497, 533, 784, 911
HspAI	GCGC	2 cut(s)	222, 439
KroI	GCCGGC	1 cut(s)	211
KroNI	GCCGGC	1 cut(s)	213
Kzo9I	GATC	3 cut(s)	464, 866, 1027
LguI	GCTCTTC	2 cut(s)	112, 299
LmnI	GCTCC	3 cut(s)	437, 490, 801
Lsp1109I	GCAGC	2 cut(s)	29, 952
LweI	GCATC	2 cut(s)	877, 1053
MaeI	CTAG	3 cut(s)	150, 518, 830
MaeIII	GTNAC	1 cut(s)	934
MalI	GATC	3 cut(s)	466, 868, 1029
MboI	GATC	3 cut(s)	464, 866, 1027
MfeI	CAATTG	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	984
MlsI	TGGCCA	1 cut(s)	681
MluCI	AATT	7 cut(s)	128, 183, 298, 361, 840, 873, 971
MluNI	TGGCCA	1 cut(s)	681
MmeI	TCCRAC	1 cut(s)	790
Mox20I	TGGCCA	1 cut(s)	681
Mph1103I	ATGCAT	1 cut(s)	786
MroNI	GCCGGC	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	681
MseI	TTAA	4 cut(s)	270, 326, 480, 968
Msp20I	TGGCCA	1 cut(s)	681
MspA1I	CMGCKG	1 cut(s)	592
MspI	CCGG	3 cut(s)	207, 212, 255
MspR9I	CCNGG	3 cut(s)	208, 256, 436
MunI	CAATTG	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	546
MvaI	CCWGG	1 cut(s)	436
MwoI	GCNNNNNNNGC	4 cut(s)	221, 438, 613, 896
NaeI	GCCGGC	1 cut(s)	213
NciI	CCSGG	2 cut(s)	208, 256
NdeII	GATC	3 cut(s)	464, 866, 1027
NgoMIV	GCCGGC	1 cut(s)	211
NlaIII	CATG	7 cut(s)	230, 313, 448, 497, 533, 784, 911
NmeAIII	GCCGAG	1 cut(s)	343
NsiI	ATGCAT	1 cut(s)	786
NspI	RCATGY	2 cut(s)	313, 533
NspV	TTCGAA	1 cut(s)	201
PaeI	GCATGC	1 cut(s)	313
PagI	TCATGA	1 cut(s)	226
PceI	AGGCCT	1 cut(s)	154
PciSI	GCTCTTC	2 cut(s)	112, 299
PctI	GAATGC	1 cut(s)	546
PdiI	GCCGGC	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	203, 424, 1100
PkrI	GCNGC	2 cut(s)	19, 942
Psp6I	CCWGG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	434
PspPI	GGNCC	2 cut(s)	209, 614
PstNI	CAGNNNCTG	1 cut(s)	1115
PvuII	CAGCTG	1 cut(s)	592
RigI	GGCCGGCC	1 cut(s)	215
SalI	GTCGAC	1 cut(s)	596
SapI	GCTCTTC	2 cut(s)	112, 299
SaqAI	TTAA	4 cut(s)	270, 326, 480, 968
SatI	GCNGC	2 cut(s)	18, 941
Sau3AI	GATC	3 cut(s)	464, 866, 1027
Sau96I	GGNCC	2 cut(s)	209, 614
ScrFI	CCNGG	3 cut(s)	208, 256, 436
SduI	GDGCHC	1 cut(s)	984
SfaNI	GCATC	2 cut(s)	877, 1053
SfcI	CTRYAG	1 cut(s)	1062
SfuI	TTCGAA	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
SphI	GCATGC	1 cut(s)	313
Sse9I	AATT	7 cut(s)	128, 183, 298, 361, 840, 873, 971
SseBI	AGGCCT	1 cut(s)	154
SsiI	CCGC	1 cut(s)	658
SspI	AATATT	1 cut(s)	1072
SspMI	CTAG	3 cut(s)	150, 518, 830
StuI	AGGCCT	1 cut(s)	154
StyD4I	CCNGG	3 cut(s)	206, 254, 434
TaaI	ACNGT	2 cut(s)	472, 1063
TaqI	TCGA	3 cut(s)	201, 597, 751
TasI	AATT	7 cut(s)	128, 183, 298, 361, 840, 873, 971
TfiI	GAWTC	3 cut(s)	203, 424, 1100
Tru1I	TTAA	4 cut(s)	270, 326, 480, 968
Tru9I	TTAA	4 cut(s)	270, 326, 480, 968
TseI	GCWGC	2 cut(s)	17, 940
TspDTI	ATGAA	5 cut(s)	243, 255, 510, 924, 980
TspGWI	ACGGA	1 cut(s)	662
XagI	CCTNNNNNAGG	1 cut(s)	920
XapI	RAATTY	1 cut(s)	971
XceI	RCATGY	2 cut(s)	313, 533
XmiI	GTMKAC	1 cut(s)	597
XspI	CTAG	3 cut(s)	150, 518, 830
Zsp2I	ATGCAT	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.