Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005702

Physical Location & Seq

Genomic Coordinates Forward (+)

28443182 .. 28446625

Gene Structure 3444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G281200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGGGAGGTGGAGAGCCGCTTCTCTTCTCCTCAATCACGTAACCACCACAGCTTCCAAATCTTCTGTAGCTGCGAAGCCTCCTTTCCATCTCTCACGTCCTTCAAGCCCCATCTTCTGCTTTCACTTCGTCAATTCAATACCTTTCTCTGCAATCCCATCTCGGGTTTCCATTGATACCAATGATTATGACTCTGAGCCTCCTTATTATGCCCACAGCCAAACTCAAGAAGACGAGGAAACCAAAAAGGTTCCTGTTAAAGCCTACTTTCTTTGTACCAGTATCAATTTGAAGAGCATGCAAGCCGAGAATTTAAGCAATGTCATTCCTCCTTCTTCTCGCTCAACAAATTATATTGCCCTCAGATTTTGCGATTTCCCTTCACAAAATGCTGAACTTGGAGTCTGGGGGAAACCGAGCTACTGTCGTTACATGGTTGTATTCCAGTATGGATCTGCCGTTCTGTTTAATGTTGAGGACCATGAAGTTGGAGCTTACCTTGATATAGTTATAAGGCATGCTTCTGGATTACTTCCAGAGATGAGGAAAGACGATTATGCTGTAAGAGAGAAGCCAAAGCTGGAGGAGGACATGCAGGGTGGCCCAGACTACATAGTTCTTAAAACTTTGGACACTGATGCTATTCGCATTATTGGAAGTGTGCTTGGCCAAAGCATTGCTTTAGATTATTTTGTATCGCAGGTTGATGGTATGGTTGAAGAGTTTGCAGATATAAATCGTGGCATGGAGAAAACTGGGACTTTCACAATGCATAAAAAGAAGCTCCTTCAACTTGTTGGGAAGGCTAACTCAAACCTAGCTGATGTAATTCTTAAAGTTGGTCTTTTTGAGAGATCAGAAATTGCTTGGAGGGATGCAAAATATGCTAAAATACATGAGTACCTTCGGGAAGAGTATGAGGTTACACAACGCTTTGGAAACTTGGATTTCAAATTAAAATTTGTAGAGCACAACATTCATTTCTTGCAAGAAGTCCTTCAAAATAGAAAGTCGGATCTTCTGGAATGGTGCATCATCTTCCTATTGAGTATAGAGAACATTATATCACTATACGAGATTGTTCGTGATTCAACTGCAGCTTCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF155

Protein Analysis

370

Amino Acids

41.97

Weight (kDa)

5.85

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69380
fragaria_vesca	FvH4_4g30570 FvH4_4g30570 FvH4_4g30570 FvH4_4g30570 FvH4_4g30570
malus_domestica	MD13G1066700.v1.1 MD16G1065900.v1.1
prunus_persica	Prupe.1G281200_v2.0.a1 Prupe.1G281200_v2.0.a1 Prupe.1G281200_v2.0.a1 Prupe.1G281200_v2.0.a1
pyrus_communis	pycom13g05900 pycom16g05750
rosa_chinensis	RchiOBHm_Chr4g0438971
rosa_laevigata	RLG00000006314
rosa_multiflora	Rmu_sc0005887.1_g000006 Rmu_sc0023005.1_g000004 Rmu_sc0023254.1_g000002 Rmu_sc0030201.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379980
rosa_rugosa	Rorug04G0314800
rosa_samantha	Rh4AG365400 Rh4BG376600 Rh4CG390700 Rh4DG371300
rosa_wichuraiana	Rw0G007370 Rw0G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	691
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	2 cut(s)	460, 1023
AcoI	YGGCCR	1 cut(s)	667
AcsI	RAATTY	2 cut(s)	310, 959
AfaI	GTAC	2 cut(s)	277, 902
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	8 cut(s)	105, 138, 292, 719, 791, 952, 1001, 1092
AjiI	CACGTC	1 cut(s)	98
AloI	GAACNNNNNNTCC	2 cut(s)	444, 476
AluBI	AGCT	8 cut(s)	53, 71, 420, 494, 580, 784, 821, 1100
AluI	AGCT	8 cut(s)	53, 71, 420, 494, 580, 784, 821, 1100
Alw21I	GWGCWC	1 cut(s)	972
AlwI	GGATC	2 cut(s)	460, 1023
Ama87I	CYCGRG	1 cut(s)	162
AoxI	GGCC	2 cut(s)	601, 667
ApeKI	GCWGC	2 cut(s)	71, 1097
ApoI	RAATTY	2 cut(s)	310, 959
Asp700I	GAANNNNTTC	1 cut(s)	996
AspS9I	GGNCC	2 cut(s)	478, 602
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	478
BaeI	ACNNNNGTAYC	2 cut(s)	884, 917
BalI	TGGCCA	1 cut(s)	669
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	972
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	4 cut(s)	96, 119, 166, 701
BceAI	ACGGC	1 cut(s)	443
BfaI	CTAG	1 cut(s)	818
BfmI	CTRYAG	2 cut(s)	66, 1095
BfuAI	ACCTGC	1 cut(s)	691
BisI	GCNGC	3 cut(s)	18, 72, 1098
BlsI	GCNGC	3 cut(s)	19, 73, 1099
Bme18I	GGWCC	1 cut(s)	478
BmeT110I	CYCGRG	1 cut(s)	162
BmgBI	CACGTC	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	478, 602
BmiI	GGNNCC	1 cut(s)	252
BmrI	ACTGGG	1 cut(s)	765
BmsI	GCATC	3 cut(s)	628, 865, 1041
BmuI	ACTGGG	1 cut(s)	765
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	210
BsaAI	YACGTR	1 cut(s)	40
BsaBI	GATNNNNATC	1 cut(s)	735
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	3 cut(s)	279, 445, 760
Bse3DI	GCAATG	2 cut(s)	325, 675
Bse8I	GATNNNNATC	1 cut(s)	735
BseGI	GGATG	1 cut(s)	880
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMI	GCAATG	2 cut(s)	325, 675
BseMII	CTCAG	2 cut(s)	186, 376
BseNI	ACTGG	3 cut(s)	279, 445, 760
BseRI	GAGGAG	2 cut(s)	20, 599
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	2 cut(s)	603, 669
BsiHKAI	GWGCWC	1 cut(s)	972
BsiHKCI	CYCGRG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	772
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	772
BsnI	GGCC	2 cut(s)	603, 669
BsoBI	CYCGRG	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	972
Bsp143I	GATC	3 cut(s)	452, 854, 1015
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	2 cut(s)	603, 669
BspCNI	CTCAG	2 cut(s)	187, 375
BspLI	GGNNCC	1 cut(s)	252
BspMAI	CTGCAG	1 cut(s)	1099
BspMI	ACCTGC	1 cut(s)	691
BspPI	GGATC	2 cut(s)	460, 1023
BspQI	GCTCTTC	1 cut(s)	287
BsrDI	GCAATG	2 cut(s)	325, 675
BsrI	ACTGG	3 cut(s)	279, 445, 760
BssMI	GATC	3 cut(s)	452, 854, 1015
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	4 cut(s)	30, 287, 714, 906
BstAPI	GCANNNNNTGC	1 cut(s)	884
BstBAI	YACGTR	1 cut(s)	40
BstC8I	GCNNGC	3 cut(s)	299, 303, 519
BstDEI	CTNAG	2 cut(s)	195, 362
BstF5I	GGATG	1 cut(s)	880
BstKTI	GATC	3 cut(s)	455, 857, 1018
BstMBI	GATC	3 cut(s)	452, 854, 1015
BstMWI	GCNNNNNNNGC	1 cut(s)	884
BstNSI	RCATGY	3 cut(s)	301, 521, 595
BstSFI	CTRYAG	2 cut(s)	66, 1095
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	452, 1015
BstXI	CCANNNNNNTGG	1 cut(s)	488
BstYI	RGATCY	2 cut(s)	452, 1015
BsuRI	GGCC	2 cut(s)	603, 669
BtrI	CACGTC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	880
BtsIMutI	CAGTG	1 cut(s)	633
BveI	ACCTGC	1 cut(s)	691
Cac8I	GCNNGC	3 cut(s)	299, 303, 519
Cfr13I	GGNCC	2 cut(s)	478, 602
Csp6I	GTAC	2 cut(s)	276, 901
CviAII	CATG	7 cut(s)	298, 433, 482, 518, 592, 745, 896
CviQI	GTAC	2 cut(s)	276, 901
DdeI	CTNAG	2 cut(s)	195, 362
DpnI	GATC	3 cut(s)	454, 856, 1017
DpnII	GATC	3 cut(s)	452, 854, 1015
EaeI	YGGCCR	1 cut(s)	667
Eam1104I	CTCTTC	4 cut(s)	30, 287, 714, 906
EarI	CTCTTC	4 cut(s)	30, 287, 714, 906
Eco47I	GGWCC	1 cut(s)	478
Eco88I	CYCGRG	1 cut(s)	162
EcoT22I	ATGCAT	1 cut(s)	774
FaeI	CATG	7 cut(s)	301, 436, 485, 521, 595, 748, 899
FalI	AAGNNNNNCTT	8 cut(s)	505, 537, 664, 696, 828, 860, 981, 1013
FaqI	GGGAC	1 cut(s)	772
FatI	CATG	7 cut(s)	297, 432, 481, 517, 591, 744, 895
Fnu4HI	GCNGC	3 cut(s)	18, 72, 1098
FokI	GGATG	1 cut(s)	887
Fsp4HI	GCNGC	3 cut(s)	18, 72, 1098
FspBI	CTAG	1 cut(s)	818
GluI	GCNGC	3 cut(s)	18, 72, 1098
GsuI	CTGGAG	1 cut(s)	602
HaeIII	GGCC	2 cut(s)	603, 669
Hin1II	CATG	7 cut(s)	301, 436, 485, 521, 595, 748, 899
HinfI	GANTC	3 cut(s)	191, 402, 1088
Hpy188I	TCNGA	4 cut(s)	196, 365, 859, 1015
Hpy188III	TCNNGA	6 cut(s)	227, 525, 536, 908, 1022, 1085
HpyAV	CCTTC	7 cut(s)	111, 342, 390, 796, 797, 914, 1007
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	2 cut(s)	39, 97
HpyCH4V	TGCA	9 cut(s)	152, 301, 595, 728, 772, 878, 988, 1032, 1097
HpyF10VI	GCNNNNNNNGC	1 cut(s)	884
HpyF3I	CTNAG	2 cut(s)	195, 362
HpySE526I	ACGT	2 cut(s)	39, 97
Hsp92II	CATG	7 cut(s)	301, 436, 485, 521, 595, 748, 899
Kzo9I	GATC	3 cut(s)	452, 854, 1015
LguI	GCTCTTC	1 cut(s)	287
LmnI	GCTCC	2 cut(s)	491, 789
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	3 cut(s)	628, 865, 1041
MaeI	CTAG	1 cut(s)	818
MaeII	ACGT	2 cut(s)	39, 97
MaeIII	GTNAC	3 cut(s)	40, 428, 922
MalI	GATC	3 cut(s)	454, 856, 1017
MboI	GATC	3 cut(s)	452, 854, 1015
MflI	RGATCY	2 cut(s)	452, 1015
MhlI	GDGCHC	1 cut(s)	972
MlsI	TGGCCA	1 cut(s)	669
MluCI	AATT	8 cut(s)	133, 286, 310, 349, 828, 861, 953, 959
MluNI	TGGCCA	1 cut(s)	669
MlyI	GAGTC	2 cut(s)	185, 411
MmeI	TCCRAC	2 cut(s)	469, 993
Mox20I	TGGCCA	1 cut(s)	669
Mph1103I	ATGCAT	1 cut(s)	774
MroXI	GAANNNNTTC	1 cut(s)	996
MscI	TGGCCA	1 cut(s)	669
MseI	TTAA	6 cut(s)	258, 314, 468, 621, 834, 956
Msp20I	TGGCCA	1 cut(s)	669
MwoI	GCNNNNNNNGC	1 cut(s)	884
NdeII	GATC	3 cut(s)	452, 854, 1015
NlaIII	CATG	7 cut(s)	301, 436, 485, 521, 595, 748, 899
NlaIV	GGNNCC	1 cut(s)	252
NmeAIII	GCCGAG	1 cut(s)	331
NsiI	ATGCAT	1 cut(s)	774
NspI	RCATGY	3 cut(s)	301, 521, 595
PaeI	GCATGC	2 cut(s)	301, 521
PciSI	GCTCTTC	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	996
PfeI	GAWTC	1 cut(s)	1088
PkrI	GCNGC	3 cut(s)	19, 73, 1099
PleI	GAGTC	2 cut(s)	185, 410
PpsI	GAGTC	2 cut(s)	185, 410
Ppu21I	YACGTR	1 cut(s)	40
PsiI	TTATAA	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	2 cut(s)	478, 602
PstI	CTGCAG	1 cut(s)	1099
PsuI	RGATCY	2 cut(s)	452, 1015
RsaI	GTAC	2 cut(s)	277, 902
RsaNI	GTAC	2 cut(s)	276, 901
SapI	GCTCTTC	1 cut(s)	287
SaqAI	TTAA	6 cut(s)	258, 314, 468, 621, 834, 956
SatI	GCNGC	3 cut(s)	18, 72, 1098
Sau3AI	GATC	3 cut(s)	452, 854, 1015
Sau96I	GGNCC	2 cut(s)	478, 602
SchI	GAGTC	2 cut(s)	185, 411
SduI	GDGCHC	1 cut(s)	972
SfaNI	GCATC	3 cut(s)	628, 865, 1041
SfcI	CTRYAG	2 cut(s)	66, 1095
SinI	GGWCC	1 cut(s)	478
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
SphI	GCATGC	2 cut(s)	301, 521
Sse9I	AATT	8 cut(s)	133, 286, 310, 349, 828, 861, 953, 959
SsiI	CCGC	1 cut(s)	18
SspMI	CTAG	1 cut(s)	818
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	2 cut(s)	42, 100
TasI	AATT	8 cut(s)	133, 286, 310, 349, 828, 861, 953, 959
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	1 cut(s)	1088
Tru1I	TTAA	6 cut(s)	258, 314, 468, 621, 834, 956
Tru9I	TTAA	6 cut(s)	258, 314, 468, 621, 834, 956
TscAI	CASTG	1 cut(s)	640
TseI	GCWGC	2 cut(s)	71, 1097
TspDTI	ATGAA	2 cut(s)	498, 968
TspRI	CASTG	1 cut(s)	640
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	2 cut(s)	310, 959
XceI	RCATGY	3 cut(s)	301, 521, 595
XmnI	GAANNNNTTC	1 cut(s)	996
XspI	CTAG	1 cut(s)	818
Zsp2I	ATGCAT	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.