Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003528

Physical Location & Seq

Genomic Coordinates Reverse (-)

26803097 .. 26804292

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G71050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGAGCTCTTGATTCTCTTTCCGAGTATATCTCCGACTACTTCCGCGTCACCAGAAAAAGGAGGAAGCGGAAAGTCATGCAGACGGTGAATATAAAGGTGAAAATGGACTGCGATGGTTGTGAACGCAGAGTCAAGAACGCGGTTTCCTCCATGAAAGGTGTGAAATCGGTGGAGGTGAATAGAAAGATACATAAAGTGACGGTGAGTGGATACGTGGAACCAAAGAAGGTATTAAAGAGAATCGAAAGGACAGGGAAAAAAGCGGAGATATGGCCGTACGTTCCTTACAACATGGTCGCATATCCATACGCGGTCGGAACTTACGACAAAAAAGCTCCGGCCGGTTATGTCAGGAAATCTGAGCAGTCGCAGTTGCAGCTGTTGCCGGGAGCTCCCGAGAACCACTACATTTCTCTTTTTAGCGACGAGAATCCCAACGCTTGCACCGTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006950 GO:0008150 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0019725 GO:0030001 GO:0030003 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055073 GO:0055076 GO:0055080 GO:0055082 GO:0061687 GO:0065007 GO:0065008 GO:0071585 GO:0072507 GO:0097501 GO:0098754 GO:0098771 GO:1990170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

152

Amino Acids

17.38

Weight (kDa)

9.77

Isoelectric Point (pI)

58.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	33 - 88	4.4e-15	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71050
fragaria_vesca	FvH4_4g32250 FvH4_4g32250 FvH4_4g32251 FvH4_4g32251
malus_domestica	MD13G1026800.v1.1 MD16G1029900.v1.1
prunus_persica	Prupe.1G323000_v2.0.a1
pyrus_communis	pycom13g02540 pycom16g02550
rosa_chinensis	RchiOBHm_Chr4g0440991 RchiOBHm_Chr4g0441001 RchiOBHm_Chr4g0441041
rosa_laevigata	RLG00000006125 RLG00000006131 RLG00000006132
rosa_multiflora	Rmu_sc0000424.1_g000032 Rmu_sc0000424.1_g000033 Rmu_sc0000424.1_g000042
rosa_roxburghii	Rroxscaffold_5G00381860 Rroxscaffold_5G00381880 Rroxscaffold_5G00381960
rosa_rugosa	Rorug04G0330000 Rorug04G0330000
rosa_samantha	Rh4AG381800 Rh4AG382000 Rh4BG395200 Rh4CG410100 Rh4CG410300 Rh4CG410700 Rh4DG388200 Rh4DG388700
rosa_wichuraiana	Rw4G032900 Rw4G032910 Rw4G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	48, 143, 314
AciI	CCGC	5 cut(s)	46, 70, 143, 266, 314
AcoI	YGGCCR	2 cut(s)	275, 342
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	60
AloI	GAACNNNNNNTCC	2 cut(s)	131, 163
AluBI	AGCT	4 cut(s)	8, 338, 382, 395
AluI	AGCT	4 cut(s)	8, 338, 382, 395
Alw21I	GWGCWC	2 cut(s)	10, 397
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	2 cut(s)	275, 342
ApeKI	GCWGC	1 cut(s)	379
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	5 cut(s)	43, 100, 112, 190, 217
AvaI	CYCGRG	1 cut(s)	398
BanII	GRGCYC	2 cut(s)	10, 397
Bbv12I	GWGCWC	2 cut(s)	10, 397
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	262
BciVI	GTATCC	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	390
BfuI	GTATCC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	380
BlsI	GCNGC	1 cut(s)	381
Bme1390I	CCNGG	1 cut(s)	390
BmeT110I	CYCGRG	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	390
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpuMI	CCSGG	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse118I	RCCGGY	1 cut(s)	344
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	354
BseX3I	CGGCCG	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	391
Bsh1236I	CGCG	3 cut(s)	48, 143, 314
Bsh1285I	CGRYCG	2 cut(s)	318, 345
BshFI	GGCC	2 cut(s)	277, 344
BsiEI	CGRYCG	2 cut(s)	318, 345
BsiHKAI	GWGCWC	2 cut(s)	10, 397
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	3 cut(s)	341, 345, 389
BsiWI	CGTACG	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	60
BsnI	GGCC	2 cut(s)	277, 344
BsoBI	CYCGRG	1 cut(s)	398
Bsp1286I	GDGCHC	2 cut(s)	10, 397
BspACI	CCGC	5 cut(s)	46, 70, 143, 266, 314
BspANI	GGCC	2 cut(s)	277, 344
BspCNI	CTCAG	1 cut(s)	355
BspFNI	CGCG	3 cut(s)	48, 143, 314
BspLI	GGNNCC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	344
BssAI	RCCGGY	1 cut(s)	344
Bst4CI	ACNGT	3 cut(s)	88, 205, 451
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstBAI	YACGTR	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	1 cut(s)	363
BstFNI	CGCG	3 cut(s)	48, 143, 314
BstMCI	CGRYCG	2 cut(s)	318, 345
BstMWI	GCNNNNNNNGC	2 cut(s)	379, 385
BstSCI	CCNGG	1 cut(s)	388
BstUI	CGCG	3 cut(s)	48, 143, 314
BstV1I	GCAGC	1 cut(s)	391
BstZI	CGGCCG	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	277, 344
BtgZI	GCGATG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	445
Cfr10I	RCCGGY	1 cut(s)	344
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	3 cut(s)	79, 154, 295
CviJI	RGCY	6 cut(s)	8, 277, 338, 344, 382, 395
CviKI_1	RGCY	6 cut(s)	8, 277, 338, 344, 382, 395
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	1 cut(s)	363
EaeI	YGGCCR	2 cut(s)	275, 342
EagI	CGGCCG	1 cut(s)	342
Ecl136II	GAGCTC	2 cut(s)	8, 395
EclXI	CGGCCG	1 cut(s)	342
Eco24I	GRGCYC	2 cut(s)	10, 397
Eco52I	CGGCCG	1 cut(s)	342
Eco53kI	GAGCTC	2 cut(s)	8, 395
Eco88I	CYCGRG	1 cut(s)	398
EcoICRI	GAGCTC	2 cut(s)	8, 395
EcoT38I	GRGCYC	2 cut(s)	10, 397
FaeI	CATG	3 cut(s)	82, 157, 298
FatI	CATG	3 cut(s)	78, 153, 294
Fnu4HI	GCNGC	1 cut(s)	380
FriOI	GRGCYC	2 cut(s)	10, 397
Fsp4HI	GCNGC	1 cut(s)	380
GluI	GCNGC	1 cut(s)	380
HaeIII	GGCC	2 cut(s)	277, 344
HapII	CCGG	3 cut(s)	341, 345, 389
HgaI	GACGC	1 cut(s)	37
Hin1II	CATG	3 cut(s)	82, 157, 298
HinfI	GANTC	4 cut(s)	14, 132, 243, 433
HpaII	CCGG	3 cut(s)	341, 345, 389
HphI	GGTGA	5 cut(s)	43, 100, 112, 190, 217
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	4 cut(s)	25, 37, 320, 364
Hpy188III	TCNNGA	4 cut(s)	11, 136, 355, 398
Hpy8I	GTNNAC	1 cut(s)	125
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	3 cut(s)	88, 205, 451
HpyCH4IV	ACGT	2 cut(s)	216, 282
HpyCH4V	TGCA	3 cut(s)	82, 379, 447
HpyF10VI	GCNNNNNNNGC	2 cut(s)	379, 385
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	2 cut(s)	216, 282
Hsp92II	CATG	3 cut(s)	82, 157, 298
LmnI	GCTCC	4 cut(s)	5, 343, 392, 400
LpnPI	CCDG	6 cut(s)	67, 240, 340, 354, 358, 402
Lsp1109I	GCAGC	1 cut(s)	391
MaeII	ACGT	2 cut(s)	216, 282
MaeIII	GTNAC	2 cut(s)	49, 199
MhlI	GDGCHC	2 cut(s)	10, 397
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	2 cut(s)	60, 298
MnlI	CCTC	3 cut(s)	57, 160, 169
MseI	TTAA	1 cut(s)	236
MslI	CAYNNNNRTG	1 cut(s)	452
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	3 cut(s)	341, 345, 389
MspR9I	CCNGG	1 cut(s)	390
MvnI	CGCG	3 cut(s)	48, 143, 314
MwoI	GCNNNNNNNGC	2 cut(s)	379, 385
NciI	CCSGG	1 cut(s)	390
NlaIII	CATG	3 cut(s)	82, 157, 298
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	2 cut(s)	49, 199
PcsI	WCGNNNNNNNCGW	2 cut(s)	324, 447
PfeI	GAWTC	3 cut(s)	14, 243, 433
Pfl23II	CGTACG	1 cut(s)	279
PkrI	GCNGC	1 cut(s)	381
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Ppu21I	YACGTR	1 cut(s)	217
Psp124BI	GAGCTC	2 cut(s)	10, 397
PspLI	CGTACG	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	222
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	452
SacI	GAGCTC	2 cut(s)	10, 397
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	1 cut(s)	380
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	2 cut(s)	10, 397
SmiMI	CAYNNNNRTG	1 cut(s)	452
SsiI	CCGC	5 cut(s)	46, 70, 143, 266, 314
SstI	GAGCTC	2 cut(s)	10, 397
StyD4I	CCNGG	1 cut(s)	388
TaaI	ACNGT	3 cut(s)	88, 205, 451
TaiI	ACGT	2 cut(s)	219, 285
TaqI	TCGA	1 cut(s)	246
TfiI	GAWTC	3 cut(s)	14, 243, 433
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TseFI	GTSAC	2 cut(s)	49, 199
TseI	GCWGC	1 cut(s)	379
Tsp45I	GTSAC	2 cut(s)	49, 199
TspDTI	ATGAA	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.