Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000424.1

Orthogroup ID

OG0003528

Physical Location & Seq

Genomic Coordinates Forward (+)

135347 .. 137729

Gene Structure 2383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000424.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgggtgctctagacactctatcagactatttcacaatgagctccaaacccagaaagaaacgaaagccagtgcagacagttgaaatcaaggtgaaaatggactgtgatggctgtgaaaggagagttaagagtgcagtctctaacatgaaaggtgcaaagcaagtcgaagtgaacagaaagcaaagccgggtgacggtgacaggttatgtggagccaaacaaggtgttaaagaaggtgaagagcaccggaaagaaagcagagatttggccctatgttccatacaatctcgttgcttatccttacgttgccggagcttatgacaagaaggcaccgtccggttacgtcagaaacgtagctcaggcggtttctagtccgccggacgaaaagtacacctccatgttcagcgatgagaatcctcatgcttgcgccatcatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

145

Amino Acids

16.19

Weight (kDa)

9.64

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71050
fragaria_vesca	FvH4_4g32250 FvH4_4g32250 FvH4_4g32251 FvH4_4g32251
malus_domestica	MD13G1026800.v1.1 MD16G1029900.v1.1
prunus_persica	Prupe.1G323000_v2.0.a1
pyrus_communis	pycom13g02540 pycom16g02550
rosa_chinensis	RchiOBHm_Chr4g0440991 RchiOBHm_Chr4g0441001 RchiOBHm_Chr4g0441041
rosa_laevigata	RLG00000006125 RLG00000006131 RLG00000006132
rosa_multiflora	Rmu_sc0000424.1_g000032 Rmu_sc0000424.1_g000033 Rmu_sc0000424.1_g000042
rosa_roxburghii	Rroxscaffold_5G00381860 Rroxscaffold_5G00381880 Rroxscaffold_5G00381960
rosa_rugosa	Rorug04G0330000 Rorug04G0330000
rosa_samantha	Rh4AG381800 Rh4AG382000 Rh4BG395200 Rh4CG410100 Rh4CG410300 Rh4CG410700 Rh4DG388200 Rh4DG388700
rosa_wichuraiana	Rw4G032900 Rw4G032910 Rw4G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AciI	CCGC	2 cut(s)	362, 374
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	83
AluBI	AGCT	3 cut(s)	42, 314, 356
AluI	AGCT	3 cut(s)	42, 314, 356
Alw21I	GWGCWC	3 cut(s)	10, 44, 245
Alw26I	GTCTC	1 cut(s)	142
AoxI	GGCC	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	1 cut(s)	267
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	4 cut(s)	103, 202, 208, 247
BanI	GGYRCC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	44
Bbv12I	GWGCWC	3 cut(s)	10, 44, 245
BccI	CCATC	2 cut(s)	101, 437
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	2 cut(s)	11, 369
Bme1390I	CCNGG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	2 cut(s)	213, 330
BmrFI	CCNGG	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	411
BsaWI	WCCGGW	2 cut(s)	245, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	68
Bse8I	GATNNNNATC	1 cut(s)	411
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	68
BsgI	GTGCAG	2 cut(s)	92, 153
BshFI	GGCC	1 cut(s)	268
BshNI	GGYRCC	1 cut(s)	328
BsiHKAI	GWGCWC	3 cut(s)	10, 44, 245
BsiSI	CCGG	5 cut(s)	187, 246, 309, 336, 377
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	268
Bsp1286I	GDGCHC	3 cut(s)	10, 44, 245
BspACI	CCGC	2 cut(s)	362, 374
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	213, 330
BspQI	GCTCTTC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	68
Bst4CI	ACNGT	4 cut(s)	79, 104, 196, 333
Bst6I	CTCTTC	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	428
BstMAI	GTCTC	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	268
BtgZI	GCGATG	1 cut(s)	420
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	424
CfoI	GCGC	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	4 cut(s)	145, 397, 419, 433
CviJI	RGCY	8 cut(s)	42, 67, 111, 186, 214, 268, 314, 356
CviKI_1	RGCY	8 cut(s)	42, 67, 111, 186, 214, 268, 314, 356
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
EciI	GGCGGA	1 cut(s)	363
Ecl136II	GAGCTC	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	4 cut(s)	148, 400, 422, 436
FaiI	YATR	8 cut(s)	146, 207, 273, 280, 318, 398, 420, 434
FatI	CATG	4 cut(s)	144, 396, 418, 432
FriOI	GRGCYC	1 cut(s)	44
FspBI	CTAG	2 cut(s)	11, 369
GlaI	GCGC	1 cut(s)	427
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	5 cut(s)	187, 246, 309, 336, 377
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	4 cut(s)	148, 400, 422, 436
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HinfI	GANTC	1 cut(s)	412
HpaII	CCGG	5 cut(s)	187, 246, 309, 336, 377
HphI	GGTGA	4 cut(s)	103, 202, 208, 247
Hpy166II	GTNNAC	2 cut(s)	172, 390
Hpy188I	TCNGA	2 cut(s)	25, 347
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	2 cut(s)	172, 390
HpyAV	CCTTC	2 cut(s)	226, 319
HpyCH4III	ACNGT	4 cut(s)	79, 104, 196, 333
HpyCH4IV	ACGT	3 cut(s)	303, 342, 351
HpyCH4V	TGCA	3 cut(s)	73, 134, 155
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	3 cut(s)	303, 342, 351
Hsp92II	CATG	4 cut(s)	148, 400, 422, 436
HspAI	GCGC	1 cut(s)	426
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	3 cut(s)	47, 211, 311
LpnPI	CCDG	9 cut(s)	64, 81, 186, 200, 259, 322, 344, 349, 390
MaeI	CTAG	2 cut(s)	11, 369
MaeII	ACGT	3 cut(s)	303, 342, 351
MaeIII	GTNAC	3 cut(s)	190, 196, 338
MboII	GAAGA	1 cut(s)	250
MhlI	GDGCHC	3 cut(s)	10, 44, 245
MnlI	CCTC	2 cut(s)	403, 426
MseI	TTAA	2 cut(s)	126, 227
MslI	CAYNNNNRTG	1 cut(s)	395
MspI	CCGG	5 cut(s)	187, 246, 309, 336, 377
MspR9I	CCNGG	1 cut(s)	188
NciI	CCSGG	1 cut(s)	188
NlaIII	CATG	4 cut(s)	148, 400, 422, 436
NlaIV	GGNNCC	2 cut(s)	213, 330
NmuCI	GTSAC	2 cut(s)	190, 196
PciSI	GCTCTTC	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	412
Psp124BI	GAGCTC	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	213, 330
PspPI	GGNCC	1 cut(s)	267
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	44
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	2 cut(s)	126, 227
Sau96I	GGNCC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	3 cut(s)	10, 44, 245
SmiMI	CAYNNNNRTG	1 cut(s)	395
SsiI	CCGC	2 cut(s)	362, 374
SspMI	CTAG	2 cut(s)	11, 369
SstI	GAGCTC	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	186
TaaI	ACNGT	4 cut(s)	79, 104, 196, 333
TaiI	ACGT	3 cut(s)	306, 345, 354
TaqI	TCGA	1 cut(s)	165
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	2 cut(s)	126, 227
Tru9I	TTAA	2 cut(s)	126, 227
TscAI	CASTG	1 cut(s)	75
TseFI	GTSAC	2 cut(s)	190, 196
Tsp45I	GTSAC	2 cut(s)	190, 196
TspDTI	ATGAA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	75
XbaI	TCTAGA	1 cut(s)	10
XspI	CTAG	2 cut(s)	11, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.