RLG00000006125

Heavy metal-associated isoprenylated plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003528
Physical Location & Seq
Reverse (-)
4619192 .. 4620336
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006125

Sequence Viewer

Length: 456 bp
ATGGGCGTTCTAGACGCTCTATCAGACTATTTCACAATGAGTCGTTCGACTCGTTCCAGACTCATGATGAGAAAGAAACGAAAGCCAATGCAGACAGTTGACATCAAGGTGAAAATGGACTGTGATGGCTGTGAAAGGAGAGTTAAGAATGCAGTCTCTCACATGAAAGGTGCAAAGCAAGTTGAAGTAAATAGAAAGCAAAGCCGGGTGACGGTGACAGGTTATGTGGAGCCAAACAAGGTGCTAAAGAGAGTTAGGAGGACCGGAAAAAGAGCTGAGATATGGCCTTACGTTCCATACAACGTCGTTGCTTATCCTTACGTTGCCGGAGCTTATGACAAGAAGGCACCGTCCGGTTACGTCAGGAACGTACCTCAGGCGGTTTCTACTGCGCAGGACGACGAGTACACCTCCATGTTCAGTGATGAGAATCCTCATGCCTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

152

Amino Acids

17.23

Weight (kDa)

9.83

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 36 - 90 9.6e-14 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 393
AccB1I GGYRCC 1 cut(s) 346
AciI CCGC 1 cut(s) 380
AfaI GTAC 2 cut(s) 372, 407
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 1 cut(s) 185
AluBI AGCT 2 cut(s) 275, 332
AluI AGCT 2 cut(s) 275, 332
Alw26I GTCTC 1 cut(s) 160
AoxI GGCC 1 cut(s) 284
AspLEI GCGC 2 cut(s) 394, 446
AspS9I GGNCC 1 cut(s) 261
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 3 cut(s) 121, 220, 226
AvaII GGWCC 1 cut(s) 261
AxyI CCTNAGG 1 cut(s) 375
BanI GGYRCC 1 cut(s) 346
BccI CCATC 2 cut(s) 119, 455
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 160
BfaI CTAG 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 2 cut(s) 231, 348
BmrFI CCNGG 1 cut(s) 206
BplI GAGNNNNNCTC 2 cut(s) 395, 427
BpuMI CCSGG 1 cut(s) 206
BsaBI GATNNNNATC 1 cut(s) 429
BsaWI WCCGGW 2 cut(s) 263, 353
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse21I CCTNAGG 1 cut(s) 375
Bse8I GATNNNNATC 1 cut(s) 429
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 2 cut(s) 267, 389
BshFI GGCC 1 cut(s) 286
BshNI GGYRCC 1 cut(s) 346
BsiSI CCGG 4 cut(s) 205, 264, 327, 354
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 154
BsnI GGCC 1 cut(s) 286
BspACI CCGC 1 cut(s) 380
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 2 cut(s) 268, 388
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 231, 348
BspT107I GGYRCC 1 cut(s) 346
Bst4CI ACNGT 4 cut(s) 97, 122, 214, 351
BstC8I GCNNGC 1 cut(s) 442
BstDEI CTNAG 2 cut(s) 276, 375
BstHHI GCGC 2 cut(s) 394, 446
BstMAI GTCTC 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 204
Bsu36I CCTNAGG 1 cut(s) 375
BsuRI GGCC 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 427
Cac8I GCNNGC 1 cut(s) 442
CciI TCATGA 1 cut(s) 63
CfoI GCGC 2 cut(s) 394, 446
Cfr13I GGNCC 1 cut(s) 261
CseI GACGC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 371, 406
CviAII CATG 5 cut(s) 64, 163, 415, 437, 451
CviJI RGCY 7 cut(s) 85, 129, 204, 232, 275, 286, 332
CviKI_1 RGCY 7 cut(s) 85, 129, 204, 232, 275, 286, 332
CviQI GTAC 2 cut(s) 371, 406
DdeI CTNAG 2 cut(s) 276, 375
Eco47I GGWCC 1 cut(s) 261
Eco81I CCTNAGG 1 cut(s) 375
FaeI CATG 5 cut(s) 67, 166, 418, 440, 454
FaiI YATR 9 cut(s) 65, 164, 225, 283, 298, 336, 416, 438, 452
FatI CATG 5 cut(s) 63, 162, 414, 436, 450
FspBI CTAG 1 cut(s) 11
FspI TGCGCA 1 cut(s) 393
GlaI GCGC 2 cut(s) 393, 445
HaeIII GGCC 1 cut(s) 286
HapII CCGG 4 cut(s) 205, 264, 327, 354
HgaI GACGC 1 cut(s) 23
HhaI GCGC 2 cut(s) 394, 446
Hin1II CATG 5 cut(s) 67, 166, 418, 440, 454
Hin6I GCGC 2 cut(s) 392, 444
HinP1I GCGC 2 cut(s) 392, 444
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 4 cut(s) 40, 49, 60, 430
HpaII CCGG 4 cut(s) 205, 264, 327, 354
HphI GGTGA 3 cut(s) 121, 220, 226
Hpy166II GTNNAC 2 cut(s) 100, 408
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 4 cut(s) 11, 57, 64, 364
Hpy8I GTNNAC 2 cut(s) 100, 408
Hpy99I CGWCG 2 cut(s) 308, 404
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 4 cut(s) 97, 122, 214, 351
HpyCH4IV ACGT 5 cut(s) 291, 303, 321, 360, 369
HpyCH4V TGCA 3 cut(s) 91, 152, 173
HpyF3I CTNAG 2 cut(s) 276, 375
HpySE526I ACGT 5 cut(s) 291, 303, 321, 360, 369
Hsp92II CATG 5 cut(s) 67, 166, 418, 440, 454
HspAI GCGC 2 cut(s) 392, 444
LmnI GCTCC 2 cut(s) 229, 329
LpnPI CCDG 9 cut(s) 70, 204, 218, 277, 340, 349, 362, 367, 380
MaeI CTAG 1 cut(s) 11
MaeII ACGT 5 cut(s) 291, 303, 321, 360, 369
MaeIII GTNAC 3 cut(s) 208, 214, 356
MlyI GAGTC 3 cut(s) 43, 49, 54
MnlI CCTC 4 cut(s) 252, 384, 421, 444
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 2 cut(s) 107, 413
MspI CCGG 4 cut(s) 205, 264, 327, 354
MspR9I CCNGG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 154
NciI CCSGG 1 cut(s) 206
NlaIII CATG 5 cut(s) 67, 166, 418, 440, 454
NlaIV GGNNCC 2 cut(s) 231, 348
NmuCI GTSAC 2 cut(s) 208, 214
NsbI TGCGCA 1 cut(s) 393
PagI TCATGA 1 cut(s) 63
PcsI WCGNNNNNNNCGW 2 cut(s) 49, 366
PctI GAATGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 430
PleI GAGTC 3 cut(s) 43, 48, 54
PpsI GAGTC 3 cut(s) 43, 48, 54
PspN4I GGNNCC 2 cut(s) 231, 348
PspPI GGNCC 1 cut(s) 261
RsaI GTAC 2 cut(s) 372, 407
RsaNI GTAC 2 cut(s) 371, 406
RseI CAYNNNNRTG 2 cut(s) 107, 413
SaqAI TTAA 1 cut(s) 144
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 3 cut(s) 43, 49, 54
ScrFI CCNGG 1 cut(s) 206
SinI GGWCC 1 cut(s) 261
SmiMI CAYNNNNRTG 2 cut(s) 107, 413
SsiI CCGC 1 cut(s) 380
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 4 cut(s) 97, 122, 214, 351
TaiI ACGT 5 cut(s) 294, 306, 324, 363, 372
TaqI TCGA 1 cut(s) 47
TatI WGTACW 1 cut(s) 405
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 2 cut(s) 208, 214
Tsp45I GTSAC 2 cut(s) 208, 214
TspDTI ATGAA 1 cut(s) 179
TspRI CASTG 1 cut(s) 427
VpaK11BI GGWCC 1 cut(s) 261
XbaI TCTAGA 1 cut(s) 10
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.