RLG00000006132

Heavy metal-associated isoprenylated plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003528
Physical Location & Seq
Reverse (-)
4683622 .. 4685004
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006132

Sequence Viewer

Length: 438 bp
ATGGGTGTGCTAGACTATCTATCAGACTATTTCACAATAAGCTCCAAACCAAAAAAGAAACGCAAGGCAATGCAGACAGTTGAAATCAAGGTGAAAATGGATTGTGATGGGTGTGAAAGGAGAGTTAAAAGTGCTGTTTCTAACATGAAAGGTGCTAAACAAGTGGAGGTGAACAGAAAGCAAAGCCTGGTGACGGTGACAGGTTATGTGGAACCAAACAAGGTGTTGAAGAAGGTGAAGAGCACCGGAAAGAAAGCCGAGATTTGGCCCTACGTTCCATATAACCTCGTTGCATACCCTTACGTTGCCGGAGCTTATGACAAGAAGGCACCGTCTGGCTACGTCAGAAACGTCCCTCAGGCAGTTGCTTTGGCACCGGACGACCAGTACACCTCTCTATTTAGCGATGACAACCCTCATGCTTGTGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

146

Amino Acids

16.16

Weight (kDa)

9.48

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 30 - 85 5.8e-14 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 328, 373
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 2 cut(s) 193, 264
AgsI TTSAA 2 cut(s) 83, 229
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 2 cut(s) 42, 314
AluI AGCT 2 cut(s) 42, 314
Alw21I GWGCWC 1 cut(s) 245
AoxI GGCC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 267
AsuHPI GGTGA 5 cut(s) 103, 181, 202, 208, 247
AxyI CCTNAGG 1 cut(s) 357
BanI GGYRCC 2 cut(s) 328, 373
Bbv12I GWGCWC 1 cut(s) 245
BccI CCATC 2 cut(s) 101, 437
BciT130I CCWGG 1 cut(s) 188
BfaI CTAG 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 3 cut(s) 213, 330, 375
BmrFI CCNGG 1 cut(s) 188
BsaWI WCCGGW 2 cut(s) 245, 376
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 264
Bse1I ACTGG 1 cut(s) 385
Bse21I CCTNAGG 1 cut(s) 357
Bse3DI GCAATG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 188
BseLI CCNNNNNNNGG 2 cut(s) 193, 264
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 371
BseNI ACTGG 1 cut(s) 385
BshFI GGCC 1 cut(s) 268
BshNI GGYRCC 2 cut(s) 328, 373
BsiHKAI GWGCWC 1 cut(s) 245
BsiSI CCGG 3 cut(s) 246, 309, 377
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 2 cut(s) 193, 264
BsmFI GGGAC 1 cut(s) 338
BsnI GGCC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 245
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 1 cut(s) 370
BspLI GGNNCC 3 cut(s) 213, 330, 375
BspQI GCTCTTC 1 cut(s) 233
BspT107I GGYRCC 2 cut(s) 328, 373
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 1 cut(s) 385
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 3 cut(s) 79, 196, 333
Bst6I CTCTTC 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 357
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 186
Bsu36I CCTNAGG 1 cut(s) 357
BsuRI GGCC 1 cut(s) 268
BtgZI GCGATG 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 267
Csp6I GTAC 1 cut(s) 388
CviAII CATG 3 cut(s) 145, 419, 433
CviJI RGCY 6 cut(s) 42, 186, 257, 268, 314, 339
CviKI_1 RGCY 6 cut(s) 42, 186, 257, 268, 314, 339
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 1 cut(s) 357
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Eco81I CCTNAGG 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 186
FaeI CATG 3 cut(s) 148, 422, 436
FaiI YATR 8 cut(s) 146, 207, 280, 282, 295, 318, 420, 434
FaqI GGGAC 1 cut(s) 338
FatI CATG 3 cut(s) 144, 418, 432
FspBI CTAG 1 cut(s) 11
HaeIII GGCC 1 cut(s) 268
HapII CCGG 3 cut(s) 246, 309, 377
Hin1II CATG 3 cut(s) 148, 422, 436
HpaII CCGG 3 cut(s) 246, 309, 377
HphI GGTGA 5 cut(s) 103, 181, 202, 208, 247
Hpy166II GTNNAC 2 cut(s) 172, 390
Hpy188I TCNGA 2 cut(s) 25, 347
Hpy8I GTNNAC 2 cut(s) 172, 390
HpyAV CCTTC 2 cut(s) 226, 319
HpyCH4III ACNGT 3 cut(s) 79, 196, 333
HpyCH4IV ACGT 4 cut(s) 273, 303, 342, 351
HpyCH4V TGCA 2 cut(s) 73, 293
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 4 cut(s) 273, 303, 342, 351
Hsp92II CATG 3 cut(s) 148, 422, 436
LguI GCTCTTC 1 cut(s) 233
LmnI GCTCC 2 cut(s) 47, 311
LpnPI CCDG 9 cut(s) 173, 186, 200, 259, 321, 322, 344, 390, 398
MaeI CTAG 1 cut(s) 11
MaeII ACGT 4 cut(s) 273, 303, 342, 351
MaeIII GTNAC 2 cut(s) 190, 196
MboII GAAGA 2 cut(s) 241, 250
MhlI GDGCHC 1 cut(s) 245
MnlI CCTC 5 cut(s) 160, 296, 366, 403, 426
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 423
MspI CCGG 3 cut(s) 246, 309, 377
MspR9I CCNGG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 188
NlaIII CATG 3 cut(s) 148, 422, 436
NlaIV GGNNCC 3 cut(s) 213, 330, 375
NmeAIII GCCGAG 1 cut(s) 283
NmuCI GTSAC 2 cut(s) 190, 196
PciSI GCTCTTC 1 cut(s) 233
PcsI WCGNNNNNNNCGW 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 3 cut(s) 213, 330, 375
PspPI GGNCC 1 cut(s) 267
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
RseI CAYNNNNRTG 1 cut(s) 423
SapI GCTCTTC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 267
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 423
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 186
TaaI ACNGT 3 cut(s) 79, 196, 333
TaiI ACGT 4 cut(s) 276, 306, 345, 354
TatI WGTACW 1 cut(s) 387
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseFI GTSAC 2 cut(s) 190, 196
Tsp45I GTSAC 2 cut(s) 190, 196
TspDTI ATGAA 1 cut(s) 161
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.