RH4BG395200

Heavy metal-associated isoprenylated plant protein

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0003528
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG395200.1

Sequence Viewer

Length: 342 bp
ATGGATTGTGATGGGTGTGAAAGGAGAGTTAAAAGTGCTGTTTCTAACATGAAAGGTGCTAAACAAGTGGAGGTGAACAGAAAGCAAAGCCGGGTGACGGTGACAGGTTATGTGGAACCAAACAAGGTGTTGAAGAAGGTGAAGAGCACCGGAAAGAAAGCAGAGATTTGGCCCTACGTTCCATACAACCTTGTTGCTTATCCTTACGTTGCCGGAGCTTATGACAAGAAGGCACCGTCCGGTTACGTCAGAAACGTAGCTCAGGCGGTTTCTAGTCCGCCGGACGACAAGTACACCTCCATGTTCAGCGATGAGAATCCTCATGCTTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

113

Amino Acids

12.51

Weight (kDa)

9.36

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 1 - 53 4.7e-14 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 232
AciI CCGC 2 cut(s) 266, 278
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 1 cut(s) 133
AluBI AGCT 2 cut(s) 218, 260
AluI AGCT 2 cut(s) 218, 260
Alw21I GWGCWC 1 cut(s) 149
AoxI GGCC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 171
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 4 cut(s) 85, 106, 112, 151
BanI GGYRCC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 149
BccI CCATC 2 cut(s) 5, 341
BcnI CCSGG 1 cut(s) 92
BfaI CTAG 1 cut(s) 273
Bme1390I CCNGG 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 171
BmiI GGNNCC 2 cut(s) 117, 234
BmrFI CCNGG 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 92
BsaBI GATNNNNATC 1 cut(s) 315
BsaWI WCCGGW 2 cut(s) 149, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse8I GATNNNNATC 1 cut(s) 315
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 275
BshFI GGCC 1 cut(s) 172
BshNI GGYRCC 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 149
BsiSI CCGG 5 cut(s) 91, 150, 213, 240, 281
BslI CCNNNNNNNGG 1 cut(s) 97
BsnI GGCC 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 149
BspACI CCGC 2 cut(s) 266, 278
BspANI GGCC 1 cut(s) 172
BspCNI CTCAG 1 cut(s) 274
BspLI GGNNCC 2 cut(s) 117, 234
BspQI GCTCTTC 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 232
Bst4CI ACNGT 2 cut(s) 100, 237
Bst6I CTCTTC 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 90
BsuRI GGCC 1 cut(s) 172
BtgZI GCGATG 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 328
CfoI GCGC 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 171
Csp6I GTAC 1 cut(s) 292
CviAII CATG 4 cut(s) 49, 301, 323, 337
CviJI RGCY 4 cut(s) 90, 172, 218, 260
CviKI_1 RGCY 4 cut(s) 90, 172, 218, 260
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
EciI GGCGGA 1 cut(s) 267
FaeI CATG 4 cut(s) 52, 304, 326, 340
FaiI YATR 7 cut(s) 50, 111, 184, 222, 302, 324, 338
FatI CATG 4 cut(s) 48, 300, 322, 336
FspBI CTAG 1 cut(s) 273
GlaI GCGC 1 cut(s) 331
HaeIII GGCC 1 cut(s) 172
HapII CCGG 5 cut(s) 91, 150, 213, 240, 281
HhaI GCGC 1 cut(s) 332
Hin1II CATG 4 cut(s) 52, 304, 326, 340
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HinfI GANTC 1 cut(s) 316
HpaII CCGG 5 cut(s) 91, 150, 213, 240, 281
HphI GGTGA 4 cut(s) 85, 106, 112, 151
Hpy166II GTNNAC 2 cut(s) 76, 294
Hpy188I TCNGA 1 cut(s) 251
Hpy8I GTNNAC 2 cut(s) 76, 294
HpyAV CCTTC 2 cut(s) 130, 223
HpyCH4III ACNGT 2 cut(s) 100, 237
HpyCH4IV ACGT 4 cut(s) 177, 207, 246, 255
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 4 cut(s) 177, 207, 246, 255
Hsp92II CATG 4 cut(s) 52, 304, 326, 340
HspAI GCGC 1 cut(s) 330
LguI GCTCTTC 1 cut(s) 137
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 7 cut(s) 90, 104, 163, 226, 248, 253, 294
MaeI CTAG 1 cut(s) 273
MaeII ACGT 4 cut(s) 177, 207, 246, 255
MaeIII GTNAC 3 cut(s) 94, 100, 242
MboII GAAGA 2 cut(s) 145, 154
MhlI GDGCHC 1 cut(s) 149
MnlI CCTC 3 cut(s) 64, 307, 330
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 1 cut(s) 299
MspI CCGG 5 cut(s) 91, 150, 213, 240, 281
MspR9I CCNGG 1 cut(s) 92
NciI CCSGG 1 cut(s) 92
NlaIII CATG 4 cut(s) 52, 304, 326, 340
NlaIV GGNNCC 2 cut(s) 117, 234
NmuCI GTSAC 2 cut(s) 94, 100
PciSI GCTCTTC 1 cut(s) 137
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PfeI GAWTC 1 cut(s) 316
PspN4I GGNNCC 2 cut(s) 117, 234
PspPI GGNCC 1 cut(s) 171
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 299
SapI GCTCTTC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 30
Sau96I GGNCC 1 cut(s) 171
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 299
SsiI CCGC 2 cut(s) 266, 278
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 100, 237
TaiI ACGT 4 cut(s) 180, 210, 249, 258
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TseFI GTSAC 2 cut(s) 94, 100
Tsp45I GTSAC 2 cut(s) 94, 100
TspDTI ATGAA 1 cut(s) 65
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.