Rh4CG410700

Heavy metal-associated isoprenylated plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0003528
Physical Location & Seq
Forward (+)
65566409 .. 65567523
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG410700.1

Sequence Viewer

Length: 441 bp
ATGGGCGTTCTAGACTCTCTATCAGACTATTTCACAATGAGTTCCAGACTCAGAAAGAAACGAAAGCCAATGCAGACAGTTGACATCGAGGTGAAAATGGACTGTGATGGCTGTGAAAGGAGAGTTAAGAATACAGTCTCTCACATGAAAGGTGCAAAGCAAGTTGAAGTGAACAGAGAGCAAAGCCGGGTGACGGTGACAGGTTATGTGGAGCCAAAAAAGGTGCTAAAGAGGGTTAAGAGGACCGGAAAGAGAGCTGAGATTTGGCCTTACGTTCCATACAACGTCGTTATTGCTTATCCTTACGTTGCCGGAGCTTATGACAAGAAGGCACCGTCCGGTTACATCAGGAACGTACCTCAGGCGGTTTCTACTGCGCAGGACGACGAGTACACCTCCATGTTCAGTGATGAGAATCCTCATGCTTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

146

Amino Acids

16.63

Weight (kDa)

9.42

Isoelectric Point (pI)

49.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 31 - 84 7.5e-13 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 378
AccB1I GGYRCC 1 cut(s) 331
AciI CCGC 1 cut(s) 365
AfaI GTAC 2 cut(s) 357, 392
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 1 cut(s) 167
AluBI AGCT 2 cut(s) 257, 317
AluI AGCT 2 cut(s) 257, 317
Alw26I GTCTC 1 cut(s) 142
AoxI GGCC 1 cut(s) 266
AspLEI GCGC 2 cut(s) 379, 431
AspS9I GGNCC 1 cut(s) 243
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 3 cut(s) 103, 202, 208
AvaII GGWCC 1 cut(s) 243
AxyI CCTNAGG 1 cut(s) 360
BanI GGYRCC 1 cut(s) 331
BccI CCATC 2 cut(s) 101, 440
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 188
Bme18I GGWCC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 2 cut(s) 213, 333
BmrFI CCNGG 1 cut(s) 188
BplI GAGNNNNNCTC 2 cut(s) 380, 412
BpuMI CCSGG 1 cut(s) 188
BsaBI GATNNNNATC 1 cut(s) 414
BsaWI WCCGGW 2 cut(s) 245, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse21I CCTNAGG 1 cut(s) 360
Bse8I GATNNNNATC 1 cut(s) 414
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMII CTCAG 3 cut(s) 64, 249, 374
BshFI GGCC 1 cut(s) 268
BshNI GGYRCC 1 cut(s) 331
BsiSI CCGG 4 cut(s) 187, 246, 312, 339
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 142
BsnI GGCC 1 cut(s) 268
BspACI CCGC 1 cut(s) 365
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 3 cut(s) 63, 250, 373
BspLI GGNNCC 2 cut(s) 213, 333
BspT107I GGYRCC 1 cut(s) 331
Bst4CI ACNGT 5 cut(s) 79, 104, 136, 196, 336
BstC8I GCNNGC 1 cut(s) 427
BstDEI CTNAG 3 cut(s) 50, 258, 360
BstHHI GCGC 2 cut(s) 379, 431
BstMAI GTCTC 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 186
Bsu36I CCTNAGG 1 cut(s) 360
BsuRI GGCC 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 412
Cac8I GCNNGC 1 cut(s) 427
CfoI GCGC 2 cut(s) 379, 431
Cfr13I GGNCC 1 cut(s) 243
Csp6I GTAC 2 cut(s) 356, 391
CviAII CATG 4 cut(s) 145, 400, 422, 436
CviJI RGCY 7 cut(s) 67, 111, 186, 214, 257, 268, 317
CviKI_1 RGCY 7 cut(s) 67, 111, 186, 214, 257, 268, 317
CviQI GTAC 2 cut(s) 356, 391
DdeI CTNAG 3 cut(s) 50, 258, 360
Eco47I GGWCC 1 cut(s) 243
Eco81I CCTNAGG 1 cut(s) 360
FaeI CATG 4 cut(s) 148, 403, 425, 439
FaiI YATR 7 cut(s) 146, 207, 280, 321, 401, 423, 437
FatI CATG 4 cut(s) 144, 399, 421, 435
FspBI CTAG 1 cut(s) 11
FspI TGCGCA 1 cut(s) 378
GlaI GCGC 2 cut(s) 378, 430
HaeIII GGCC 1 cut(s) 268
HapII CCGG 4 cut(s) 187, 246, 312, 339
HhaI GCGC 2 cut(s) 379, 431
Hin1II CATG 4 cut(s) 148, 403, 425, 439
Hin6I GCGC 2 cut(s) 377, 429
HinP1I GCGC 2 cut(s) 377, 429
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 3 cut(s) 14, 48, 415
HpaII CCGG 4 cut(s) 187, 246, 312, 339
HphI GGTGA 3 cut(s) 103, 202, 208
Hpy166II GTNNAC 3 cut(s) 82, 172, 393
Hpy188I TCNGA 2 cut(s) 25, 53
Hpy188III TCNNGA 3 cut(s) 11, 45, 349
Hpy8I GTNNAC 3 cut(s) 82, 172, 393
Hpy99I CGWCG 2 cut(s) 290, 389
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 5 cut(s) 79, 104, 136, 196, 336
HpyCH4IV ACGT 4 cut(s) 273, 285, 306, 354
HpyCH4V TGCA 2 cut(s) 73, 155
HpyF3I CTNAG 3 cut(s) 50, 258, 360
HpySE526I ACGT 4 cut(s) 273, 285, 306, 354
Hsp92II CATG 4 cut(s) 148, 403, 425, 439
HspAI GCGC 2 cut(s) 377, 429
LmnI GCTCC 2 cut(s) 211, 314
LpnPI CCDG 9 cut(s) 58, 186, 200, 259, 325, 334, 347, 352, 365
MaeI CTAG 1 cut(s) 11
MaeII ACGT 4 cut(s) 273, 285, 306, 354
MaeIII GTNAC 3 cut(s) 190, 196, 341
MlyI GAGTC 2 cut(s) 8, 42
MnlI CCTC 6 cut(s) 82, 225, 234, 369, 406, 429
MseI TTAA 2 cut(s) 126, 237
MslI CAYNNNNRTG 2 cut(s) 89, 398
MspI CCGG 4 cut(s) 187, 246, 312, 339
MspR9I CCNGG 1 cut(s) 188
NciI CCSGG 1 cut(s) 188
NlaIII CATG 4 cut(s) 148, 403, 425, 439
NlaIV GGNNCC 2 cut(s) 213, 333
NmuCI GTSAC 2 cut(s) 190, 196
NsbI TGCGCA 1 cut(s) 378
PfeI GAWTC 1 cut(s) 415
PleI GAGTC 2 cut(s) 8, 42
PpsI GAGTC 2 cut(s) 8, 42
PspN4I GGNNCC 2 cut(s) 213, 333
PspPI GGNCC 1 cut(s) 243
RsaI GTAC 2 cut(s) 357, 392
RsaNI GTAC 2 cut(s) 356, 391
RseI CAYNNNNRTG 2 cut(s) 89, 398
SaqAI TTAA 2 cut(s) 126, 237
Sau96I GGNCC 1 cut(s) 243
SchI GAGTC 2 cut(s) 8, 42
ScrFI CCNGG 1 cut(s) 188
SinI GGWCC 1 cut(s) 243
SmiMI CAYNNNNRTG 2 cut(s) 89, 398
SsiI CCGC 1 cut(s) 365
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 186
TaaI ACNGT 5 cut(s) 79, 104, 136, 196, 336
TaiI ACGT 4 cut(s) 276, 288, 309, 357
TaqI TCGA 1 cut(s) 87
TatI WGTACW 1 cut(s) 390
TfiI GAWTC 1 cut(s) 415
Tru1I TTAA 2 cut(s) 126, 237
Tru9I TTAA 2 cut(s) 126, 237
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 2 cut(s) 190, 196
Tsp45I GTSAC 2 cut(s) 190, 196
TspDTI ATGAA 1 cut(s) 161
TspRI CASTG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 243
XbaI TCTAGA 1 cut(s) 10
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.