AT1G72275

Nucleolar pre-ribosomal-associated protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009592
Physical Location & Seq
Reverse (-)
27209404 .. 27211500
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72275.2

Sequence Viewer

Length: 1275 bp
ATGGTAGCCGGAAAACGAAAATCCGACAGAAACCCAACAAATGTATCCGACAAACTTGGTCTAAAAGACCCATTACTGCGCCGTCTCTCTTCCGCTGCCGCCGTAACAAACTCTTTTCTCCAAGCCAACGATCTCTTCCTCTCACCATCACAGACCCTCCGCCTTGAATCCCTAATCTCATCTCTCCCAATCTCACCTTCCCCTTCTTCCTCCTCCTCCGCCATCACCACCACCACGTGGTTCAACCGCTTCTTAACCTCCGCCACAGAAGACGAAGATGATCCTCGCTGGTGTCTTTATTTCCGAATGTCAAAATCCACCTTCTTCAGTCTCTACTCTATCCTCTCCCATTCTTCGCTTCCTTCCTTCGCTGCCACAATCTTCCGTCTCGCTCACGGTGCTTCTTACGAGTGTCTCGTTCACAGATTCGGGTTTGATTCCACTTCCCAAGCTTCACGCTCTTTCTTCACTGTCTGCAAACTCATCAATGAGAAATTAAGTCAACAACTTGATGATCCTAAACCCGATTTTTCACCTAATCTGCTTCCGAATTGCTACGGTGTTGTCGGATTCGGGAGGTTTGAGGTTAAAGGAAAGCTTCTTGGTGCTAAAGGTTCGATCTTGGTTCAAGCATTGGTTGATTCCAATGGCAGATTCGTTGATATCTCAGCTGGTTGGCCAAGTACTATGAAACCAGAAGCTATTTTTAGACAGACGAAGCTTTTTTCAATTGCAGAGGAAGTTCTCAGTGGAGCTCCGACTAAACTTGGAAATGGAGTATTGGTTCCTCGTTACATATTGGGAGATTCTTGTCTTCCTTTATTGCCGTGGCTTGTTACACCTTATGATTTGACTTCAGACGAGGAGAGTTTTAGAGAAGAATTCAACAATGTAGTACACACTGGATTGCATAGTGTTGAGATTGCGTTTGCTAAGGTTCGAGCTCGGTGGCGGATTCTTGATAAGAAATGGAAACCAGAGACAATCGAGTTTATGCCGTTTGTCATAACTACGGGTTGCTTGTTGCATAATTTTCTTGTGAATTCTGGTGATGATGATGATTCAGTGGAGGAATGTGTGAATGGTTGTGAAGCTGGTGATAATGGTGAGATGAGAAAAGATGATGATAAGGAGGAGGAGACTCGGAGTTTCGAAGGAGAAGCATATAGAGAGTCGAAGAGGATCAGAGATGCTATCGCTGAGAACCTAAGCCGAGTTCACATGGCCCAATCACAAAAGGTTTCGGCTCGGCCCATTGTGAGAGCACTCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NopRA1 Npa1

Protein Analysis

424

Amino Acids

47.17

Weight (kDa)

6.05

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDE_Tnp_4 PF13359 206 - 344 1.2e-13 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 237
AciI CCGC 7 cut(s) 93, 99, 160, 219, 247, 261, 952
AclWI GGATC 3 cut(s) 275, 509, 1190
AcoI YGGCCR 1 cut(s) 677
AcsI RAATTY 2 cut(s) 881, 1042
AcuI CTGAAG 2 cut(s) 310, 840
AcvI CACGTG 1 cut(s) 237
AdeI CACNNNGTG 1 cut(s) 237
AfaI GTAC 2 cut(s) 685, 897
AfiI CCNNNNNNNGG 1 cut(s) 237
AgsI TTSAA 5 cut(s) 167, 244, 629, 729, 886
AjuI GAANNNNNNNTTGG 6 cut(s) 119, 151, 181, 213, 638, 670
AloI GAACNNNNNNTCC 2 cut(s) 768, 800
AluBI AGCT 8 cut(s) 452, 598, 671, 701, 721, 755, 944, 1094
AluI AGCT 8 cut(s) 452, 598, 671, 701, 721, 755, 944, 1094
Alw21I GWGCWC 3 cut(s) 757, 946, 1267
Alw26I GTCTC 6 cut(s) 89, 335, 392, 419, 974, 1133
AlwI GGATC 3 cut(s) 275, 509, 1190
AoxI GGCC 3 cut(s) 677, 1224, 1250
ApeKI GCWGC 2 cut(s) 95, 371
ApoI RAATTY 2 cut(s) 881, 1042
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 2 cut(s) 1225, 1251
AsuHPI GGTGA 7 cut(s) 135, 186, 217, 525, 1061, 1109, 1118
AsuII TTCGAA 1 cut(s) 1152
BaeI ACNNNNGTAYC 2 cut(s) 27, 60
BalI TGGCCA 1 cut(s) 679
BanII GRGCYC 2 cut(s) 757, 946
BbrPI CACGTG 1 cut(s) 237
BbsI GAAGAC 2 cut(s) 276, 806
Bbv12I GWGCWC 3 cut(s) 757, 946, 1267
BbvI GCAGC 2 cut(s) 82, 358
BccI CCATC 2 cut(s) 154, 230
BceAI ACGGC 4 cut(s) 66, 86, 811, 982
BciVI GTATCC 1 cut(s) 55
BcoDI GTCTC 6 cut(s) 89, 335, 392, 419, 974, 1133
BfuI GTATCC 1 cut(s) 55
BisI GCNGC 3 cut(s) 96, 99, 372
BlsI GCNGC 3 cut(s) 97, 100, 373
BmcAI AGTACT 1 cut(s) 685
BmgT120I GGNCC 2 cut(s) 1225, 1251
BmiI GGNNCC 1 cut(s) 786
BmsI GCATC 1 cut(s) 1180
BpiI GAAGAC 2 cut(s) 276, 806
Bpu10I CCTNAGC 2 cut(s) 933, 1208
Bpu14I TTCGAA 1 cut(s) 1152
BsaAI YACGTR 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 827
BsaXI ACNNNNNCTCC 4 cut(s) 141, 171, 768, 798
Bsc4I CCNNNNNNNGG 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 907
BseDI CCNNGG 1 cut(s) 827
BseLI CCNNNNNNNGG 1 cut(s) 237
BseMII CTCAG 3 cut(s) 681, 760, 1191
BseNI ACTGG 1 cut(s) 907
BseRI GAGGAG 5 cut(s) 202, 205, 878, 1148, 1151
BseXI GCAGC 2 cut(s) 82, 358
BshFI GGCC 3 cut(s) 679, 1226, 1252
BsiHKAI GWGCWC 3 cut(s) 757, 946, 1267
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 237
BsmAI GTCTC 6 cut(s) 89, 335, 392, 419, 974, 1133
BsmBI CGTCTC 2 cut(s) 89, 392
BsnI GGCC 3 cut(s) 679, 1226, 1252
Bsp119I TTCGAA 1 cut(s) 1152
Bsp1286I GDGCHC 3 cut(s) 757, 946, 1267
Bsp143I GATC 5 cut(s) 130, 280, 514, 618, 1182
BspACI CCGC 7 cut(s) 93, 99, 160, 219, 247, 261, 952
BspANI GGCC 3 cut(s) 679, 1226, 1252
BspCNI CTCAG 3 cut(s) 680, 759, 1192
BspLI GGNNCC 1 cut(s) 786
BspPI GGATC 3 cut(s) 275, 509, 1190
BspT104I TTCGAA 1 cut(s) 1152
BsrI ACTGG 1 cut(s) 907
BssECI CCNNGG 1 cut(s) 827
BssMI GATC 5 cut(s) 130, 280, 514, 618, 1182
Bst4CI ACNGT 3 cut(s) 398, 472, 560
Bst6I CTCTTC 3 cut(s) 94, 140, 1172
BstBAI YACGTR 1 cut(s) 237
BstBI TTCGAA 1 cut(s) 1152
BstDEI CTNAG 5 cut(s) 667, 746, 933, 1200, 1208
BstDSI CCRYGG 1 cut(s) 827
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 5 cut(s) 133, 283, 517, 621, 1185
BstMAI GTCTC 6 cut(s) 89, 335, 392, 419, 974, 1133
BstMBI GATC 5 cut(s) 130, 280, 514, 618, 1182
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstV1I GCAGC 2 cut(s) 82, 358
BstV2I GAAGAC 2 cut(s) 276, 806
BsuI GTATCC 1 cut(s) 55
BsuRI GGCC 3 cut(s) 679, 1226, 1252
BtgI CCRYGG 1 cut(s) 827
BtsIMutI CAGTG 4 cut(s) 468, 754, 900, 1071
CfoI GCGC 1 cut(s) 81
Cfr13I GGNCC 2 cut(s) 1225, 1251
Csp6I GTAC 2 cut(s) 684, 896
CviAII CATG 1 cut(s) 1222
CviQI GTAC 2 cut(s) 684, 896
DdeI CTNAG 5 cut(s) 667, 746, 933, 1200, 1208
DpnI GATC 5 cut(s) 132, 282, 516, 620, 1184
DpnII GATC 5 cut(s) 130, 280, 514, 618, 1182
DraIII CACNNNGTG 1 cut(s) 237
EaeI YGGCCR 1 cut(s) 677
Eam1104I CTCTTC 3 cut(s) 94, 140, 1172
EarI CTCTTC 3 cut(s) 94, 140, 1172
EciI GGCGGA 4 cut(s) 149, 208, 250, 967
Ecl136II GAGCTC 2 cut(s) 755, 944
Eco24I GRGCYC 2 cut(s) 757, 946
Eco32I GATATC 1 cut(s) 664
Eco53kI GAGCTC 2 cut(s) 755, 944
Eco57I CTGAAG 2 cut(s) 310, 840
Eco72I CACGTG 1 cut(s) 237
EcoICRI GAGCTC 2 cut(s) 755, 944
EcoRI GAATTC 2 cut(s) 881, 1042
EcoRV GATATC 1 cut(s) 664
EcoT38I GRGCYC 2 cut(s) 757, 946
Esp3I CGTCTC 2 cut(s) 89, 392
FaeI CATG 1 cut(s) 1225
FalI AAGNNNNNCTT 2 cut(s) 582, 614
FatI CATG 1 cut(s) 1221
Fnu4HI GCNGC 3 cut(s) 96, 99, 372
FriOI GRGCYC 2 cut(s) 757, 946
Fsp4HI GCNGC 3 cut(s) 96, 99, 372
GlaI GCGC 1 cut(s) 80
GluI GCNGC 3 cut(s) 96, 99, 372
HaeIII GGCC 3 cut(s) 679, 1226, 1252
HapII CCGG 1 cut(s) 9
HhaI GCGC 1 cut(s) 81
Hin1II CATG 1 cut(s) 1225
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HincII GTYRAC 1 cut(s) 503
HindII GTYRAC 1 cut(s) 503
HindIII AAGCTT 3 cut(s) 450, 596, 719
HpaII CCGG 1 cut(s) 9
HphI GGTGA 7 cut(s) 135, 186, 217, 525, 1061, 1109, 1118
Hpy166II GTNNAC 4 cut(s) 421, 503, 898, 1219
Hpy188I TCNGA 9 cut(s) 25, 49, 305, 549, 569, 759, 859, 1146, 1187
Hpy188III TCNNGA 2 cut(s) 574, 959
Hpy8I GTNNAC 4 cut(s) 421, 503, 898, 1219
HpyAV CCTTC 6 cut(s) 207, 213, 331, 372, 376, 1148
HpyCH4III ACNGT 3 cut(s) 398, 472, 560
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 4 cut(s) 477, 734, 910, 1027
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 5 cut(s) 667, 746, 933, 1200, 1208
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 1 cut(s) 1225
HspAI GCGC 1 cut(s) 79
Kzo9I GATC 5 cut(s) 130, 280, 514, 618, 1182
LmnI GCTCC 2 cut(s) 752, 760
LpnPI CCDG 8 cut(s) 22, 274, 657, 708, 888, 990, 1032, 1080
Lsp1109I GCAGC 2 cut(s) 82, 358
LweI GCATC 1 cut(s) 1180
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 3 cut(s) 103, 791, 835
MalI GATC 5 cut(s) 132, 282, 516, 620, 1184
MboI GATC 5 cut(s) 130, 280, 514, 618, 1182
MfeI CAATTG 1 cut(s) 729
MhlI GDGCHC 3 cut(s) 757, 946, 1267
MlsI TGGCCA 1 cut(s) 679
MluCI AATT 6 cut(s) 494, 550, 729, 881, 1030, 1042
MluNI TGGCCA 1 cut(s) 679
MlyI GAGTC 2 cut(s) 1135, 1181
MmeI TCCRAC 4 cut(s) 48, 72, 547, 782
Mox20I TGGCCA 1 cut(s) 679
MscI TGGCCA 1 cut(s) 679
MseI TTAA 4 cut(s) 254, 497, 588, 1273
Msp20I TGGCCA 1 cut(s) 679
MspA1I CMGCKG 2 cut(s) 95, 671
MspI CCGG 1 cut(s) 9
MunI CAATTG 1 cut(s) 729
MwoI GCNNNNNNNGC 1 cut(s) 398
NdeII GATC 5 cut(s) 130, 280, 514, 618, 1182
NlaIII CATG 1 cut(s) 1225
NlaIV GGNNCC 1 cut(s) 786
NmeAIII GCCGAG 2 cut(s) 1228, 1238
NspV TTCGAA 1 cut(s) 1152
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PfeI GAWTC 9 cut(s) 167, 426, 437, 570, 641, 654, 806, 955, 1061
PflMI CCANNNNNTGG 1 cut(s) 237
PkrI GCNGC 3 cut(s) 97, 100, 373
PleI GAGTC 2 cut(s) 1135, 1180
PmaCI CACGTG 1 cut(s) 237
PmlI CACGTG 1 cut(s) 237
PpsI GAGTC 2 cut(s) 1135, 1180
Ppu21I YACGTR 1 cut(s) 237
Psp124BI GAGCTC 2 cut(s) 757, 946
PspCI CACGTG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 786
PspPI GGNCC 2 cut(s) 1225, 1251
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 2 cut(s) 685, 897
RsaNI GTAC 2 cut(s) 684, 896
SacI GAGCTC 2 cut(s) 757, 946
SaqAI TTAA 4 cut(s) 254, 497, 588, 1273
SatI GCNGC 3 cut(s) 96, 99, 372
Sau3AI GATC 5 cut(s) 130, 280, 514, 618, 1182
Sau96I GGNCC 2 cut(s) 1225, 1251
ScaI AGTACT 1 cut(s) 685
SchI GAGTC 2 cut(s) 1135, 1181
SduI GDGCHC 3 cut(s) 757, 946, 1267
SfaNI GCATC 1 cut(s) 1180
SfuI TTCGAA 1 cut(s) 1152
Sse9I AATT 6 cut(s) 494, 550, 729, 881, 1030, 1042
SsiI CCGC 7 cut(s) 93, 99, 160, 219, 247, 261, 952
SstI GAGCTC 2 cut(s) 757, 946
TaaI ACNGT 3 cut(s) 398, 472, 560
TaiI ACGT 1 cut(s) 239
TaqI TCGA 5 cut(s) 617, 940, 987, 1152, 1175
TasI AATT 6 cut(s) 494, 550, 729, 881, 1030, 1042
TatI WGTACW 2 cut(s) 683, 895
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 9 cut(s) 167, 426, 437, 570, 641, 654, 806, 955, 1061
Tru1I TTAA 4 cut(s) 254, 497, 588, 1273
Tru9I TTAA 4 cut(s) 254, 497, 588, 1273
TscAI CASTG 4 cut(s) 475, 754, 907, 1071
TseI GCWGC 2 cut(s) 95, 371
TspDTI ATGAA 1 cut(s) 704
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 4 cut(s) 475, 754, 907, 1071
Van91I CCANNNNNTGG 1 cut(s) 237
XapI RAATTY 2 cut(s) 881, 1042
ZrmI AGTACT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.