Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8191818.1

Orthogroup ID

OG0009592

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 700

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8191818.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

tttctgacctccgcaatcccttcgattccgcccaactacgccctcgccgccgcgatttaccgcctcgcccacggcgccacctacaaggcggtcggccggcgcttcgggatggactcggcggaggcctgccgggctttctacgccgtctgcaagtcggtcaatgataaattagggaccttgtttgagctccggtccgatatggctcggattgttgggggtttcgggtggatttcgctgccgaattgctgtggggtgttggggtttgggagatttggggttagtggtgaaatgctggggccaaatgggtccctgttggttcaggcattggtggattctgaagggaggtttctggatgtttcggctggctggccgagcacagtgaaaccggaagcgattttccggcagagtaagctgtatttgggtgtggaggagtccggggagttgttgaatggtcctgtttatgagctcagtgatggcaatgcgcttcctcagtacatactgggggactcttgctttcctctgctgccttggcttttgactccgtatgtgagatcaaatgaggaagaggagagtttcggtacactggagaaggcgtttaactcggcgcatggtcgcgcgatggggctggttgggacggcgtttgcgagggtgagggctcggtggcagctgctgagtagggagtggaaggaagagtgtgtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

233

Amino Acids

25.39

Weight (kDa)

5.81

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72275 AT1G72275
fragaria_vesca	FvH4_1g01971 FvH4_1g01971 FvH4_1g01971 FvH4_1g01971
prunus_persica	Prupe.7G257400_v2.0.a1
pyrus_communis	pycom02g01620 pycom15g14570
rosa_chinensis	RchiOBHm_Chr2g0087021
rosa_laevigata	RLG00000002276 RLG00000015823
rosa_multiflora	Rmu_co8191818.1_g000001 Rmu_sc0010698.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153950
rosa_rugosa	Rorug01G0471600
rosa_samantha	Rh2AG024400 Rh2BG024900 Rh2CG025000 Rh2DG024900
rosa_wichuraiana	Rw2G001920 Rw2G001970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AccII	CGCG	3 cut(s)	53, 615, 617
AciI	CCGC	7 cut(s)	12, 29, 48, 51, 61, 89, 119
AcoI	YGGCCR	2 cut(s)	94, 368
AcuI	CTGAAG	1 cut(s)	357
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	2 cut(s)	494, 580
AgsI	TTSAA	1 cut(s)	448
AluBI	AGCT	4 cut(s)	187, 412, 466, 667
AluI	AGCT	4 cut(s)	187, 412, 466, 667
Alw21I	GWGCWC	3 cut(s)	189, 377, 468
AlwNI	CAGNNNCTG	1 cut(s)	670
AoxI	GGCC	4 cut(s)	94, 123, 296, 368
ApeKI	GCWGC	4 cut(s)	235, 523, 664, 667
AspLEI	GCGC	5 cut(s)	77, 102, 484, 607, 617
AspS9I	GGNCC	5 cut(s)	174, 192, 296, 306, 452
AsuC2I	CCSGG	2 cut(s)	131, 436
AsuHPI	GGTGA	2 cut(s)	296, 661
AvaII	GGWCC	4 cut(s)	174, 192, 306, 452
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	3 cut(s)	189, 468, 658
Bbv12I	GWGCWC	3 cut(s)	189, 377, 468
BbvI	GCAGC	4 cut(s)	222, 510, 654, 676
BccI	CCATC	3 cut(s)	103, 467, 613
BceAI	ACGGC	3 cut(s)	88, 128, 651
BcgI	CGANNNNNNTGC	1 cut(s)	37
BcnI	CCSGG	2 cut(s)	131, 436
BfoI	RGCGCY	2 cut(s)	78, 103
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	6 cut(s)	48, 51, 236, 524, 665, 668
BlsI	GCNGC	6 cut(s)	49, 52, 237, 525, 666, 669
Bme1390I	CCNGG	2 cut(s)	131, 436
Bme18I	GGWCC	4 cut(s)	174, 192, 306, 452
BmgT120I	GGNCC	5 cut(s)	174, 192, 296, 306, 452
BmiI	GGNNCC	5 cut(s)	76, 175, 297, 307, 308
BmrFI	CCNGG	2 cut(s)	131, 436
BmrI	ACTGGG	1 cut(s)	509
BmuI	ACTGGG	1 cut(s)	509
BpmI	CTGGAG	1 cut(s)	605
BpuMI	CCSGG	2 cut(s)	131, 436
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	70, 435, 527
BsaWI	WCCGGW	2 cut(s)	189, 385
BsaXI	ACNNNNNCTCC	2 cut(s)	578, 608
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	2 cut(s)	504, 588
Bse3DI	GCAATG	1 cut(s)	484
BseDI	CCNNGG	3 cut(s)	70, 435, 527
BseGI	GGATG	2 cut(s)	114, 358
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	3 cut(s)	481, 503, 662
BseNI	ACTGG	2 cut(s)	504, 588
BseRI	GAGGAG	2 cut(s)	443, 581
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	4 cut(s)	222, 510, 654, 676
BseYI	CCCAGC	1 cut(s)	292
Bsh1236I	CGCG	3 cut(s)	53, 615, 617
Bsh1285I	CGRYCG	2 cut(s)	93, 97
BshFI	GGCC	4 cut(s)	96, 125, 298, 370
BshNI	GGYRCC	1 cut(s)	74
BsiEI	CGRYCG	2 cut(s)	93, 97
BsiHKAI	GWGCWC	3 cut(s)	189, 377, 468
BsiSI	CCGG	6 cut(s)	97, 130, 190, 386, 400, 435
BslFI	GGGAC	4 cut(s)	187, 292, 518, 646
BsmFI	GGGAC	4 cut(s)	187, 292, 518, 646
BsnI	GGCC	4 cut(s)	96, 125, 298, 370
Bsp1286I	GDGCHC	4 cut(s)	189, 377, 468, 658
Bsp143I	GATC	1 cut(s)	551
BspACI	CCGC	7 cut(s)	12, 29, 48, 51, 61, 89, 119
BspANI	GGCC	4 cut(s)	96, 125, 298, 370
BspCNI	CTCAG	3 cut(s)	480, 502, 663
BspFNI	CGCG	3 cut(s)	53, 615, 617
BspLI	GGNNCC	5 cut(s)	76, 175, 297, 307, 308
BspT107I	GGYRCC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	484
BsrFI	RCCGGY	1 cut(s)	96
BsrI	ACTGG	2 cut(s)	504, 588
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	3 cut(s)	70, 435, 527
BssMI	GATC	1 cut(s)	551
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	527
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	2 cut(s)	558, 684
BstACI	GRCGYC	1 cut(s)	75
BstC8I	GCNNGC	4 cut(s)	98, 127, 364, 368
BstDEI	CTNAG	3 cut(s)	467, 489, 671
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	2 cut(s)	114, 358
BstFNI	CGCG	3 cut(s)	53, 615, 617
BstH2I	RGCGCY	2 cut(s)	78, 103
BstHHI	GCGC	5 cut(s)	77, 102, 484, 607, 617
BstKTI	GATC	1 cut(s)	554
BstMBI	GATC	1 cut(s)	551
BstMCI	CGRYCG	2 cut(s)	93, 97
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 74, 131, 140, 372, 409, 529
BstSCI	CCNGG	2 cut(s)	129, 434
BstUI	CGCG	3 cut(s)	53, 615, 617
BstV1I	GCAGC	4 cut(s)	222, 510, 654, 676
BstZI	CGGCCG	1 cut(s)	94
BsuRI	GGCC	4 cut(s)	96, 125, 298, 370
BtgI	CCRYGG	1 cut(s)	70
BtgZI	GCGATG	1 cut(s)	632
BtsCI	GGATG	2 cut(s)	114, 358
BtsIMutI	CAGTG	3 cut(s)	384, 475, 581
Cac8I	GCNNGC	4 cut(s)	98, 127, 364, 368
CaiI	CAGNNNCTG	1 cut(s)	670
CfoI	GCGC	5 cut(s)	77, 102, 484, 607, 617
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	5 cut(s)	174, 192, 296, 306, 452
CpoI	CGGWCCG	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	493, 579
CspI	CGGWCCG	1 cut(s)	192
CviAII	CATG	1 cut(s)	608
CviQI	GTAC	2 cut(s)	493, 579
DdeI	CTNAG	3 cut(s)	467, 489, 671
DinI	GGCGCC	1 cut(s)	76
DpnI	GATC	1 cut(s)	553
DpnII	GATC	1 cut(s)	551
EaeI	YGGCCR	2 cut(s)	94, 368
EagI	CGGCCG	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	558, 684
EarI	CTCTTC	2 cut(s)	558, 684
EciI	GGCGGA	2 cut(s)	18, 134
Ecl136II	GAGCTC	2 cut(s)	187, 466
EclXI	CGGCCG	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	527
Eco147I	AGGCCT	1 cut(s)	125
Eco24I	GRGCYC	3 cut(s)	189, 468, 658
Eco47I	GGWCC	4 cut(s)	174, 192, 306, 452
Eco52I	CGGCCG	1 cut(s)	94
Eco53kI	GAGCTC	2 cut(s)	187, 466
Eco57I	CTGAAG	1 cut(s)	357
EcoICRI	GAGCTC	2 cut(s)	187, 466
EcoO109I	RGGNCCY	2 cut(s)	174, 306
EcoT14I	CCWWGG	1 cut(s)	527
EcoT38I	GRGCYC	3 cut(s)	189, 468, 658
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	527
FaeI	CATG	1 cut(s)	611
FaiI	YATR	5 cut(s)	200, 462, 497, 546, 609
FaqI	GGGAC	4 cut(s)	187, 292, 518, 646
FatI	CATG	1 cut(s)	607
Fnu4HI	GCNGC	6 cut(s)	48, 51, 236, 524, 665, 668
FokI	GGATG	2 cut(s)	121, 365
FriOI	GRGCYC	3 cut(s)	189, 468, 658
Fsp4HI	GCNGC	6 cut(s)	48, 51, 236, 524, 665, 668
GlaI	GCGC	5 cut(s)	76, 101, 483, 606, 616
GluI	GCNGC	6 cut(s)	48, 51, 236, 524, 665, 668
GsaI	CCCAGC	1 cut(s)	296
GsuI	CTGGAG	1 cut(s)	605
HaeII	RGCGCY	2 cut(s)	78, 103
HaeIII	GGCC	4 cut(s)	96, 125, 298, 370
HapII	CCGG	6 cut(s)	97, 130, 190, 386, 400, 435
HhaI	GCGC	5 cut(s)	77, 102, 484, 607, 617
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	611
Hin6I	GCGC	5 cut(s)	75, 100, 482, 605, 615
HinP1I	GCGC	5 cut(s)	75, 100, 482, 605, 615
HinfI	GANTC	6 cut(s)	25, 113, 332, 431, 506, 538
HpaII	CCGG	6 cut(s)	97, 130, 190, 386, 400, 435
HphI	GGTGA	2 cut(s)	296, 661
Hpy166II	GTNNAC	1 cut(s)	581
Hpy188I	TCNGA	4 cut(s)	6, 196, 207, 337
Hpy188III	TCNNGA	2 cut(s)	106, 350
Hpy8I	GTNNAC	1 cut(s)	581
HpyAV	CCTTC	4 cut(s)	30, 332, 583, 679
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4V	TGCA	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 74, 131, 140, 372, 409, 529
HpyF3I	CTNAG	3 cut(s)	467, 489, 671
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	611
HspAI	GCGC	5 cut(s)	75, 100, 482, 605, 615
KasI	GGCGCC	1 cut(s)	74
KflI	GGGWCCC	1 cut(s)	306
KroI	GCCGGC	1 cut(s)	96
KroNI	GCCGGC	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	551
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	4 cut(s)	222, 510, 654, 676
MalI	GATC	1 cut(s)	553
MboI	GATC	1 cut(s)	551
MboII	GAAGA	1 cut(s)	575
MhlI	GDGCHC	4 cut(s)	189, 377, 468, 658
MluCI	AATT	2 cut(s)	167, 241
Mly113I	GGCGCC	1 cut(s)	75
MlyI	GAGTC	4 cut(s)	107, 440, 500, 532
MroNI	GCCGGC	1 cut(s)	96
MseI	TTAA	1 cut(s)	597
MspA1I	CMGCKG	1 cut(s)	667
MspI	CCGG	6 cut(s)	97, 130, 190, 386, 400, 435
MspR9I	CCNGG	2 cut(s)	131, 436
MvnI	CGCG	3 cut(s)	53, 615, 617
MwoI	GCNNNNNNNGC	7 cut(s)	47, 74, 131, 140, 372, 409, 529
NaeI	GCCGGC	1 cut(s)	98
NarI	GGCGCC	1 cut(s)	75
NciI	CCSGG	2 cut(s)	131, 436
NdeII	GATC	1 cut(s)	551
NgoMIV	GCCGGC	1 cut(s)	96
NlaIII	CATG	1 cut(s)	611
NlaIV	GGNNCC	5 cut(s)	76, 175, 297, 307, 308
NmeAIII	GCCGAG	3 cut(s)	95, 396, 581
PceI	AGGCCT	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	641
PdiI	GCCGGC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	25, 332
PkrI	GCNGC	6 cut(s)	49, 52, 237, 525, 666, 669
PleI	GAGTC	4 cut(s)	107, 439, 500, 532
PluTI	GGCGCC	1 cut(s)	78
PpsI	GAGTC	4 cut(s)	107, 439, 500, 532
PpuMI	RGGWCCY	2 cut(s)	174, 306
Psp124BI	GAGCTC	2 cut(s)	189, 468
Psp5II	RGGWCCY	2 cut(s)	174, 306
PspFI	CCCAGC	1 cut(s)	292
PspN4I	GGNNCC	5 cut(s)	76, 175, 297, 307, 308
PspPI	GGNCC	5 cut(s)	174, 192, 296, 306, 452
PspPPI	RGGWCCY	2 cut(s)	174, 306
PstNI	CAGNNNCTG	1 cut(s)	670
PvuII	CAGCTG	1 cut(s)	667
RsaI	GTAC	2 cut(s)	494, 580
RsaNI	GTAC	2 cut(s)	493, 579
Rsr2I	CGGWCCG	1 cut(s)	192
RsrII	CGGWCCG	1 cut(s)	192
SacI	GAGCTC	2 cut(s)	189, 468
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	6 cut(s)	48, 51, 236, 524, 665, 668
Sau3AI	GATC	1 cut(s)	551
Sau96I	GGNCC	5 cut(s)	174, 192, 296, 306, 452
SchI	GAGTC	4 cut(s)	107, 440, 500, 532
ScrFI	CCNGG	2 cut(s)	131, 436
SduI	GDGCHC	4 cut(s)	189, 377, 468, 658
SetI	ASST	8 cut(s)	11, 83, 179, 189, 347, 414, 468, 669
SfoI	GGCGCC	1 cut(s)	76
SinI	GGWCC	4 cut(s)	174, 192, 306, 452
Sse9I	AATT	2 cut(s)	167, 241
SseBI	AGGCCT	1 cut(s)	125
SsiI	CCGC	7 cut(s)	12, 29, 48, 51, 61, 89, 119
SspDI	GGCGCC	1 cut(s)	74
SstI	GAGCTC	2 cut(s)	189, 468
StuI	AGGCCT	1 cut(s)	125
StyD4I	CCNGG	2 cut(s)	129, 434
StyI	CCWWGG	1 cut(s)	527
TaaI	ACNGT	1 cut(s)	379
TaqI	TCGA	1 cut(s)	23
TaqII	GACCGA	1 cut(s)	145
TasI	AATT	2 cut(s)	167, 241
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	2 cut(s)	50, 53
TfiI	GAWTC	2 cut(s)	25, 332
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	3 cut(s)	384, 475, 588
TseI	GCWGC	4 cut(s)	235, 523, 664, 667
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	3 cut(s)	384, 475, 588
VpaK11BI	GGWCC	4 cut(s)	174, 192, 306, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.