Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010698.1

Orthogroup ID

OG0009592

Physical Location & Seq

Genomic Coordinates Reverse (-)

11671 .. 12972

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010698.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

atgtccgccgtcagcggcggcggagcagccaagaacaccgccaagcgcggcaagcggaagaacaagaaccaccacactccgccgctcgatcaacgaaacctcctcagcctcgtcacctccgccacctcactcgcccactccttcctctcccaaaacgacctccacctcctcccctcccaaaccctaaccctagagaccctcctctcctccgcctcctccgccctctcccccctcctcctcctcccatctcctcctccgccgccgccgcaaccgccgccgcctcctcctcaagaatgctggttccgccgcttcctctcctccgcccccggcgactcgccgtggcgccacgctttccgcatgtccgaacactcgttctctatccttctctccatcctctccccgtttctgacctccgcaatcccttcgattccgcccaactacgccctcgccgccgcgatttaccgcctcgcccacggcgccacctacaaggcggtcggccggcgcttcgggatggactcggcggaggcctgccgggctttctacgccgtctgcaagtcggtcaatgataaattagggagcttgtttgagctccggtccgatatggctcggattgttgggggtttcgggtggatttcgctgccgaattgctgtggggtgttggggtttgggagatttggggttagtggtgaaatgctggggccaaatgggtccctgttggttcaggcattggtggattctgaagggaggtttctggatgtttcggctggctggccgagcacagtgaaaccggaagcgattttccggcagagtaagctgtatttgggtgtggaggagtccggggagttgttgaatggtcctgtttatgagctcagtgatggcaatgcgcttcctcagtacatactgggggactcttgctttcctctgctgccttggcttttgactccctatgtgagatcaaatgaggaagaggagagtttcggtacactggagaaggcgtttaactcggcgcatggtcgcgcgatggggctggttgggacggcgtttgcgagggtgagggctcggtggcagctgctgagtagggagtggaaggaagagtgtgtggtgtttttgccgtttgtggtggttactggctgtctgctgaataattttctgatgaagtgtagtgagccgctgccggatgacaatgtggggtgcttgagggaggaggagcttcaggtgttcgaaggacaggtggatgagagtggcgagaggattagggatgtgcttgccgcgcacttgagccgggtaagcctaagaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

433

Amino Acids

47.27

Weight (kDa)

7.1

Isoelectric Point (pI)

58.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72275 AT1G72275
fragaria_vesca	FvH4_1g01971 FvH4_1g01971 FvH4_1g01971 FvH4_1g01971
prunus_persica	Prupe.7G257400_v2.0.a1
pyrus_communis	pycom02g01620 pycom15g14570
rosa_chinensis	RchiOBHm_Chr2g0087021
rosa_laevigata	RLG00000002276 RLG00000015823
rosa_multiflora	Rmu_co8191818.1_g000001 Rmu_sc0010698.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153950
rosa_rugosa	Rorug01G0471600
rosa_samantha	Rh2AG024400 Rh2BG024900 Rh2CG025000 Rh2DG024900
rosa_wichuraiana	Rw2G001920 Rw2G001970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	342, 476
AccBSI	CCGCTC	1 cut(s)	85
AccII	CGCG	5 cut(s)	48, 455, 1017, 1019, 1271
AcoI	YGGCCR	2 cut(s)	496, 770
AcuI	CTGAAG	2 cut(s)	759, 1196
AcyI	GRCGYC	2 cut(s)	343, 477
AfaI	GTAC	2 cut(s)	896, 982
AgsI	TTSAA	1 cut(s)	850
AluBI	AGCT	6 cut(s)	579, 589, 814, 868, 1069, 1210
AluI	AGCT	6 cut(s)	579, 589, 814, 868, 1069, 1210
Alw21I	GWGCWC	3 cut(s)	591, 779, 870
Alw26I	GTCTC	1 cut(s)	188
AlwNI	CAGNNNCTG	1 cut(s)	1072
AoxI	GGCC	4 cut(s)	496, 525, 698, 770
ApeKI	GCWGC	6 cut(s)	26, 637, 925, 1066, 1069, 1171
AspLEI	GCGC	8 cut(s)	48, 345, 479, 504, 886, 1009, 1019, 1273
AspS9I	GGNCC	4 cut(s)	594, 698, 708, 854
AsuC2I	CCSGG	4 cut(s)	327, 533, 838, 1283
AsuHPI	GGTGA	3 cut(s)	106, 698, 1063
AsuII	TTCGAA	1 cut(s)	1221
AvaII	GGWCC	3 cut(s)	594, 708, 854
BanI	GGYRCC	2 cut(s)	342, 476
BanII	GRGCYC	3 cut(s)	591, 870, 1060
Bbv12I	GWGCWC	3 cut(s)	591, 779, 870
BbvCI	CCTCAGC	1 cut(s)	104
BbvI	GCAGC	6 cut(s)	38, 624, 912, 1056, 1078, 1158
BccI	CCATC	5 cut(s)	253, 398, 505, 869, 1015
BceAI	ACGGC	5 cut(s)	322, 490, 530, 1053, 1096
BcgI	CGANNNNNNTGC	2 cut(s)	405, 439
BcnI	CCSGG	4 cut(s)	327, 533, 838, 1283
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	191
BfoI	RGCGCY	3 cut(s)	346, 480, 505
BglI	GCCNNNNNGGC	1 cut(s)	533
Bme1390I	CCNGG	4 cut(s)	327, 533, 838, 1283
Bme18I	GGWCC	3 cut(s)	594, 708, 854
BmgT120I	GGNCC	4 cut(s)	594, 698, 708, 854
BmiI	GGNNCC	6 cut(s)	302, 344, 478, 699, 709, 710
BmrFI	CCNGG	4 cut(s)	327, 533, 838, 1283
BmrI	ACTGGG	1 cut(s)	911
BmuI	ACTGGG	1 cut(s)	911
BpmI	CTGGAG	1 cut(s)	1007
Bpu10I	CCTNAGC	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	1221
BpuEI	CTTGAG	3 cut(s)	273, 1216, 1297
BpuMI	CCSGG	4 cut(s)	327, 533, 838, 1283
BsaHI	GRCGYC	2 cut(s)	343, 477
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	5 cut(s)	325, 338, 472, 837, 929
BsaWI	WCCGGW	2 cut(s)	591, 787
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 980, 1010
Bse118I	RCCGGY	1 cut(s)	498
Bse1I	ACTGG	3 cut(s)	906, 990, 1132
Bse3DI	GCAATG	1 cut(s)	886
BseDI	CCNNGG	5 cut(s)	325, 338, 472, 837, 929
BseGI	GGATG	6 cut(s)	390, 516, 760, 1183, 1240, 1264
BseMI	GCAATG	1 cut(s)	886
BseMII	CTCAG	4 cut(s)	118, 883, 905, 1064
BseNI	ACTGG	3 cut(s)	906, 990, 1132
BseX3I	CGGCCG	1 cut(s)	496
BseXI	GCAGC	6 cut(s)	38, 624, 912, 1056, 1078, 1158
BseYI	CCCAGC	1 cut(s)	694
Bsh1236I	CGCG	5 cut(s)	48, 455, 1017, 1019, 1271
Bsh1285I	CGRYCG	2 cut(s)	495, 499
BshFI	GGCC	4 cut(s)	498, 527, 700, 772
BshNI	GGYRCC	2 cut(s)	342, 476
BsiEI	CGRYCG	2 cut(s)	495, 499
BsiHKAI	GWGCWC	3 cut(s)	591, 779, 870
BsiSI	CCGG	9 cut(s)	327, 499, 532, 592, 788, 802, 837, 1175, 1282
BslFI	GGGAC	3 cut(s)	694, 920, 1048
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	3 cut(s)	694, 920, 1048
BsmI	GAATGC	1 cut(s)	299
BsnI	GGCC	4 cut(s)	498, 527, 700, 772
Bso31I	GGTCTC	1 cut(s)	188
Bsp119I	TTCGAA	1 cut(s)	1221
Bsp1286I	GDGCHC	4 cut(s)	591, 779, 870, 1060
Bsp143I	GATC	2 cut(s)	88, 953
BspANI	GGCC	4 cut(s)	498, 527, 700, 772
BspCNI	CTCAG	4 cut(s)	117, 882, 904, 1065
BspFNI	CGCG	5 cut(s)	48, 455, 1017, 1019, 1271
BspLI	GGNNCC	6 cut(s)	302, 344, 478, 699, 709, 710
BspT104I	TTCGAA	1 cut(s)	1221
BspT107I	GGYRCC	2 cut(s)	342, 476
BspTNI	GGTCTC	1 cut(s)	188
BsrBI	CCGCTC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	886
BsrFI	RCCGGY	1 cut(s)	498
BsrI	ACTGG	3 cut(s)	906, 990, 1132
BssAI	RCCGGY	1 cut(s)	498
BssECI	CCNNGG	5 cut(s)	325, 338, 472, 837, 929
BssMI	GATC	2 cut(s)	88, 953
BssNI	GRCGYC	2 cut(s)	343, 477
BssT1I	CCWWGG	1 cut(s)	929
Bst4CI	ACNGT	1 cut(s)	781
Bst6I	CTCTTC	2 cut(s)	960, 1086
BstACI	GRCGYC	2 cut(s)	343, 477
BstBI	TTCGAA	1 cut(s)	1221
BstC8I	GCNNGC	6 cut(s)	53, 500, 529, 766, 770, 1266
BstDEI	CTNAG	5 cut(s)	104, 869, 891, 1073, 1292
BstDSI	CCRYGG	2 cut(s)	338, 472
BstF5I	GGATG	6 cut(s)	390, 516, 760, 1183, 1240, 1264
BstFNI	CGCG	5 cut(s)	48, 455, 1017, 1019, 1271
BstH2I	RGCGCY	3 cut(s)	346, 480, 505
BstHHI	GCGC	8 cut(s)	48, 345, 479, 504, 886, 1009, 1019, 1273
BstKTI	GATC	2 cut(s)	91, 956
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	2 cut(s)	88, 953
BstMCI	CGRYCG	2 cut(s)	495, 499
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	4 cut(s)	325, 531, 836, 1281
BstUI	CGCG	5 cut(s)	48, 455, 1017, 1019, 1271
BstV1I	GCAGC	6 cut(s)	38, 624, 912, 1056, 1078, 1158
BstZI	CGGCCG	1 cut(s)	496
BsuRI	GGCC	4 cut(s)	498, 527, 700, 772
BtgI	CCRYGG	2 cut(s)	338, 472
BtgZI	GCGATG	1 cut(s)	1034
BtsCI	GGATG	6 cut(s)	390, 516, 760, 1183, 1240, 1264
BtsIMutI	CAGTG	3 cut(s)	786, 877, 983
Cac8I	GCNNGC	6 cut(s)	53, 500, 529, 766, 770, 1266
CaiI	CAGNNNCTG	1 cut(s)	1072
CfoI	GCGC	8 cut(s)	48, 345, 479, 504, 886, 1009, 1019, 1273
Cfr10I	RCCGGY	1 cut(s)	498
Cfr13I	GGNCC	4 cut(s)	594, 698, 708, 854
CpoI	CGGWCCG	1 cut(s)	594
Csp6I	GTAC	2 cut(s)	895, 981
CspI	CGGWCCG	1 cut(s)	594
CviAII	CATG	2 cut(s)	358, 1010
CviQI	GTAC	2 cut(s)	895, 981
DdeI	CTNAG	5 cut(s)	104, 869, 891, 1073, 1292
DinI	GGCGCC	2 cut(s)	344, 478
DpnI	GATC	2 cut(s)	90, 955
DpnII	GATC	2 cut(s)	88, 953
EaeI	YGGCCR	2 cut(s)	496, 770
EagI	CGGCCG	1 cut(s)	496
Eam1104I	CTCTTC	2 cut(s)	960, 1086
EarI	CTCTTC	2 cut(s)	960, 1086
Ecl136II	GAGCTC	2 cut(s)	589, 868
EclXI	CGGCCG	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	929
Eco147I	AGGCCT	1 cut(s)	527
Eco24I	GRGCYC	3 cut(s)	591, 870, 1060
Eco31I	GGTCTC	1 cut(s)	188
Eco47I	GGWCC	3 cut(s)	594, 708, 854
Eco52I	CGGCCG	1 cut(s)	496
Eco53kI	GAGCTC	2 cut(s)	589, 868
Eco57I	CTGAAG	2 cut(s)	759, 1196
EcoICRI	GAGCTC	2 cut(s)	589, 868
EcoO109I	RGGNCCY	1 cut(s)	708
EcoT14I	CCWWGG	1 cut(s)	929
EcoT38I	GRGCYC	3 cut(s)	591, 870, 1060
EgeI	GGCGCC	2 cut(s)	344, 478
EheI	GGCGCC	2 cut(s)	344, 478
ErhI	CCWWGG	1 cut(s)	929
FaeI	CATG	2 cut(s)	361, 1013
FaiI	YATR	6 cut(s)	359, 602, 864, 899, 948, 1011
FaqI	GGGAC	3 cut(s)	694, 920, 1048
FatI	CATG	2 cut(s)	357, 1009
FokI	GGATG	6 cut(s)	377, 523, 767, 1190, 1247, 1271
FriOI	GRGCYC	3 cut(s)	591, 870, 1060
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	8 cut(s)	47, 344, 478, 503, 885, 1008, 1018, 1272
GsaI	CCCAGC	1 cut(s)	698
GsuI	CTGGAG	1 cut(s)	1007
HaeII	RGCGCY	3 cut(s)	346, 480, 505
HaeIII	GGCC	4 cut(s)	498, 527, 700, 772
HapII	CCGG	9 cut(s)	327, 499, 532, 592, 788, 802, 837, 1175, 1282
HhaI	GCGC	8 cut(s)	48, 345, 479, 504, 886, 1009, 1019, 1273
Hin1I	GRCGYC	2 cut(s)	343, 477
Hin1II	CATG	2 cut(s)	361, 1013
Hin6I	GCGC	8 cut(s)	46, 343, 477, 502, 884, 1007, 1017, 1271
HinP1I	GCGC	8 cut(s)	46, 343, 477, 502, 884, 1007, 1017, 1271
HinfI	GANTC	7 cut(s)	332, 427, 515, 734, 833, 908, 940
HpaII	CCGG	9 cut(s)	327, 499, 532, 592, 788, 802, 837, 1175, 1282
HphI	GGTGA	3 cut(s)	106, 698, 1063
Hpy166II	GTNNAC	1 cut(s)	983
Hpy188I	TCNGA	6 cut(s)	364, 408, 598, 609, 739, 1152
Hpy188III	TCNNGA	3 cut(s)	290, 508, 752
Hpy8I	GTNNAC	1 cut(s)	983
HpyAV	CCTTC	7 cut(s)	151, 392, 432, 734, 985, 1081, 1217
HpyCH4III	ACNGT	1 cut(s)	781
HpyCH4V	TGCA	1 cut(s)	552
HpyF3I	CTNAG	5 cut(s)	104, 869, 891, 1073, 1292
Hsp92I	GRCGYC	2 cut(s)	343, 477
Hsp92II	CATG	2 cut(s)	361, 1013
HspAI	GCGC	8 cut(s)	46, 343, 477, 502, 884, 1007, 1017, 1271
KasI	GGCGCC	2 cut(s)	342, 476
KflI	GGGWCCC	1 cut(s)	708
KroI	GCCGGC	1 cut(s)	498
KroNI	GCCGGC	1 cut(s)	500
Kzo9I	GATC	2 cut(s)	88, 953
LmnI	GCTCC	4 cut(s)	23, 576, 594, 1207
Lsp1109I	GCAGC	6 cut(s)	38, 624, 912, 1056, 1078, 1158
MaeI	CTAG	1 cut(s)	191
MaeIII	GTNAC	2 cut(s)	112, 1123
MalI	GATC	2 cut(s)	90, 955
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	2 cut(s)	88, 953
MboII	GAAGA	3 cut(s)	70, 977, 1103
MhlI	GDGCHC	4 cut(s)	591, 779, 870, 1060
MluCI	AATT	3 cut(s)	569, 643, 1144
Mly113I	GGCGCC	2 cut(s)	343, 477
MlyI	GAGTC	5 cut(s)	326, 509, 842, 902, 934
MroNI	GCCGGC	1 cut(s)	498
MseI	TTAA	1 cut(s)	999
MspA1I	CMGCKG	3 cut(s)	15, 1069, 1171
MspI	CCGG	9 cut(s)	327, 499, 532, 592, 788, 802, 837, 1175, 1282
MspR9I	CCNGG	4 cut(s)	327, 533, 838, 1283
Mva1269I	GAATGC	1 cut(s)	299
MvnI	CGCG	5 cut(s)	48, 455, 1017, 1019, 1271
NaeI	GCCGGC	1 cut(s)	500
NarI	GGCGCC	2 cut(s)	343, 477
NciI	CCSGG	4 cut(s)	327, 533, 838, 1283
NdeII	GATC	2 cut(s)	88, 953
NgoMIV	GCCGGC	1 cut(s)	498
NlaIII	CATG	2 cut(s)	361, 1013
NlaIV	GGNNCC	6 cut(s)	302, 344, 478, 699, 709, 710
NmeAIII	GCCGAG	3 cut(s)	497, 798, 983
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	361
NspV	TTCGAA	1 cut(s)	1221
PceI	AGGCCT	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	1 cut(s)	1043
PctI	GAATGC	1 cut(s)	299
PdiI	GCCGGC	1 cut(s)	500
PfeI	GAWTC	2 cut(s)	427, 734
PleI	GAGTC	5 cut(s)	326, 509, 841, 902, 934
PluTI	GGCGCC	2 cut(s)	346, 480
PpsI	GAGTC	5 cut(s)	326, 509, 841, 902, 934
PpuMI	RGGWCCY	1 cut(s)	708
Psp124BI	GAGCTC	2 cut(s)	591, 870
Psp5II	RGGWCCY	1 cut(s)	708
PspFI	CCCAGC	1 cut(s)	694
PspN4I	GGNNCC	6 cut(s)	302, 344, 478, 699, 709, 710
PspPI	GGNCC	4 cut(s)	594, 698, 708, 854
PspPPI	RGGWCCY	1 cut(s)	708
PstNI	CAGNNNCTG	1 cut(s)	1072
PvuII	CAGCTG	1 cut(s)	1069
RsaI	GTAC	2 cut(s)	896, 982
RsaNI	GTAC	2 cut(s)	895, 981
Rsr2I	CGGWCCG	1 cut(s)	594
RsrII	CGGWCCG	1 cut(s)	594
SacI	GAGCTC	2 cut(s)	591, 870
SaqAI	TTAA	1 cut(s)	999
Sau3AI	GATC	2 cut(s)	88, 953
Sau96I	GGNCC	4 cut(s)	594, 698, 708, 854
SchI	GAGTC	5 cut(s)	326, 509, 842, 902, 934
ScrFI	CCNGG	4 cut(s)	327, 533, 838, 1283
SduI	GDGCHC	4 cut(s)	591, 779, 870, 1060
SfoI	GGCGCC	2 cut(s)	344, 478
SfuI	TTCGAA	1 cut(s)	1221
SinI	GGWCC	3 cut(s)	594, 708, 854
SmlI	CTYRAG	3 cut(s)	288, 1195, 1276
SmoI	CTYRAG	3 cut(s)	288, 1195, 1276
Sse9I	AATT	3 cut(s)	569, 643, 1144
SseBI	AGGCCT	1 cut(s)	527
SspDI	GGCGCC	2 cut(s)	342, 476
SspMI	CTAG	1 cut(s)	191
SstI	GAGCTC	2 cut(s)	591, 870
StuI	AGGCCT	1 cut(s)	527
StyD4I	CCNGG	4 cut(s)	325, 531, 836, 1281
StyI	CCWWGG	1 cut(s)	929
TaaI	ACNGT	1 cut(s)	781
TaqI	TCGA	3 cut(s)	87, 425, 1221
TaqII	GACCGA	1 cut(s)	547
TasI	AATT	3 cut(s)	569, 643, 1144
TatI	WGTACW	1 cut(s)	894
TfiI	GAWTC	2 cut(s)	427, 734
Tru1I	TTAA	1 cut(s)	999
Tru9I	TTAA	1 cut(s)	999
TscAI	CASTG	3 cut(s)	786, 877, 990
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	6 cut(s)	26, 637, 925, 1066, 1069, 1171
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	1169
TspRI	CASTG	3 cut(s)	786, 877, 990
VpaK11BI	GGWCC	3 cut(s)	594, 708, 854
XceI	RCATGY	1 cut(s)	361
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.