Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009592

Physical Location & Seq

Genomic Coordinates Reverse (-)

21527910 .. 21529223

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G257400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGCTGCCGGCGGCGGTGGCGGCAGAGCAGCTAAGAGCACCACCAAAGGCAAGGCCAAAAACAAGAAACGACACAACAAGAAGCCCCTCAGTCAACACCACCTCGTAAGTCTCGTAGCCACCGCCACCTCACTGGCCCACTCCTTCCTCTCCCAAAACGACCTTCTCCTTCTGCCCTCCCAAACCCTAACCCTAGAAACCCTTCTCTCCTCCACCTCCACCTCCCTCTCCACCCTCCTCTGCTTCCCGAACCCACCACCGCAACCACCACTACGGCCGCCACCACCACCACTAGAATGCTGGTTCAGCCGCTTCCTCTCCGCTACCTCCGCCAGCAGAAACTTCGACTCACGGTGGTCCTACACCTTCCGCATGTCCGAACACTCCTTCTCCATCCTCCTCTCTCTCCTCTCCCCATTTCTCAACTCCACAATCCCTTCAATTCCACCCAATTTCGTTCTGGCTGCTGCAATTTACCGTTTAGCCCACGGCGCGAGCTACAAGGCTGTGGGAAGGCGCTTCGGGCTCGACTCGGTGGAGGCCTGCCGAGCCTTTTTCGCCGTCTGTAAGGCGGTGAGCGATAAATTAGGTAACTTGTTCGAGTTCCGGTCTGATATAGCCCGGATTGTGGGGGGTTTCGGGTGGATTTCGCTGCCGAATTGTTGTGGGGTTTTGGGGTTTGGGAGGTTTGGGGTTGGTGGTGAAGTGTTGGGGCCAAATGGGTCTTTGTTGGTTCAGGCATTGGTGGACTCTGAGGGGAGGTTCCTTGATGTCTCGGCCGGATGGCCCAGCGCCATGAAACTCGAATCCATTTTCCGTCAGACTAAACTTTATTTGGGTGTAGAGGAATCTAGGGACTTGCTGAATGGTCCTGTTTATGAGCTTGGTAATGGCAAGGCCATTCCTCAATACATATTGGGGGACTCTTGCTTCCCTCTTTTACCATGGCTTTTAACACCTTATATAAGATCGGATGAGGCGGATAGCTTTGGTTCATTGGAGAAGGCGTTTAATTCGGTACATAGTCGCGCAATGGGGTTGGTTGACACCGCATTTGGGAGGGTTCGGGCTCGGTGGCAGCTTCTGTCTAGGCAGTGGAAGGAAGAGTGTGTCGAGTTTCTGCCATTCGTTATTGTTACAGGGTGCCTGCTGCATAATTTTCTCATCAAGTGTAGTGAGCCCATGCCAGATGACAATGTGAAGAGCTCAAGGGAGGAGGAGCTTCCTGTTTTCCATGGACAGGTGGATGAGAGTGGTGAGAGGATGAGGGATGTACTTGCCGCCCACCTGAGTCGGGTAAGCCTGAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

438

Amino Acids

47.98

Weight (kDa)

9.07

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72275 AT1G72275
fragaria_vesca	FvH4_1g01971 FvH4_1g01971 FvH4_1g01971 FvH4_1g01971
prunus_persica	Prupe.7G257400_v2.0.a1
pyrus_communis	pycom02g01620 pycom15g14570
rosa_chinensis	RchiOBHm_Chr2g0087021
rosa_laevigata	RLG00000002276 RLG00000015823
rosa_multiflora	Rmu_co8191818.1_g000001 Rmu_sc0010698.1_g000003
rosa_roxburghii	Rroxscaffold_2G00153950
rosa_rugosa	Rorug01G0471600
rosa_samantha	Rh2AG024400 Rh2BG024900 Rh2CG025000 Rh2DG024900
rosa_wichuraiana	Rw2G001920 Rw2G001970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1143
AccII	CGCG	2 cut(s)	494, 1029
AcoI	YGGCCR	2 cut(s)	275, 777
AfaI	GTAC	2 cut(s)	1020, 1275
AfiI	CCNNNNNNNGG	4 cut(s)	628, 1056, 1240, 1294
AgsI	TTSAA	1 cut(s)	441
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
AluBI	AGCT	7 cut(s)	32, 498, 883, 987, 1081, 1206, 1222
AluI	AGCT	7 cut(s)	32, 498, 883, 987, 1081, 1206, 1222
Alw21I	GWGCWC	2 cut(s)	41, 1208
Alw26I	GTCTC	2 cut(s)	116, 778
AlwNI	CAGNNNCTG	1 cut(s)	1084
AoxI	GGCC	8 cut(s)	54, 135, 275, 540, 713, 777, 785, 897
ApeKI	GCWGC	7 cut(s)	5, 29, 464, 467, 652, 1078, 1150
ArsI	GACNNNNNNTTYG	2 cut(s)	1037, 1069
Asp700I	GAANNNNTTC	1 cut(s)	201
AspLEI	GCGC	4 cut(s)	494, 519, 794, 1031
AspS9I	GGNCC	5 cut(s)	136, 357, 713, 786, 869
AsuC2I	CCSGG	1 cut(s)	622
AsuHPI	GGTGA	3 cut(s)	586, 713, 1268
AvaII	GGWCC	2 cut(s)	357, 869
BanI	GGYRCC	1 cut(s)	1143
BanII	GRGCYC	4 cut(s)	528, 1072, 1182, 1208
Bbv12I	GWGCWC	2 cut(s)	41, 1208
BbvI	GCAGC	6 cut(s)	41, 451, 454, 639, 1090, 1137
BccI	CCATC	2 cut(s)	401, 777
BceAI	ACGGC	3 cut(s)	290, 505, 545
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BcnI	CCSGG	1 cut(s)	622
BcoDI	GTCTC	2 cut(s)	116, 778
BfaI	CTAG	4 cut(s)	194, 293, 852, 1089
BfoI	RGCGCY	2 cut(s)	520, 795
Bme1390I	CCNGG	1 cut(s)	622
Bme18I	GGWCC	2 cut(s)	357, 869
BmgT120I	GGNCC	5 cut(s)	136, 357, 713, 786, 869
BmiI	GGNNCC	3 cut(s)	714, 764, 1145
BmrFI	CCNGG	1 cut(s)	622
BpuEI	CTTGAG	1 cut(s)	1192
BpuMI	CCSGG	1 cut(s)	622
BsaJI	CCNNGG	3 cut(s)	487, 944, 1234
BsaWI	WCCGGW	1 cut(s)	606
BsaXI	ACNNNNNCTCC	4 cut(s)	374, 404, 992, 1022
Bsc4I	CCNNNNNNNGG	4 cut(s)	628, 1056, 1240, 1294
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	1038
BseDI	CCNNGG	3 cut(s)	487, 944, 1234
BseGI	GGATG	6 cut(s)	393, 788, 979, 1252, 1269, 1276
BseLI	CCNNNNNNNGG	4 cut(s)	628, 1056, 1240, 1294
BseMI	GCAATG	1 cut(s)	1038
BseMII	CTCAG	4 cut(s)	103, 744, 1280, 1295
BseNI	ACTGG	1 cut(s)	138
BseRI	GAGGAG	6 cut(s)	199, 227, 389, 398, 1229, 1232
BseX3I	CGGCCG	2 cut(s)	275, 777
BseXI	GCAGC	6 cut(s)	41, 451, 454, 639, 1090, 1137
BseYI	CCCAGC	1 cut(s)	788
Bsh1236I	CGCG	2 cut(s)	494, 1029
Bsh1285I	CGRYCG	2 cut(s)	278, 780
BshFI	GGCC	8 cut(s)	56, 137, 277, 542, 715, 779, 787, 899
BshNI	GGYRCC	1 cut(s)	1143
BsiEI	CGRYCG	2 cut(s)	278, 780
BsiHKAI	GWGCWC	2 cut(s)	41, 1208
BsiSI	CCGG	4 cut(s)	9, 607, 622, 780
BslFI	GGGAC	2 cut(s)	869, 935
BslI	CCNNNNNNNGG	4 cut(s)	628, 1056, 1240, 1294
BsmAI	GTCTC	2 cut(s)	116, 778
BsmFI	GGGAC	2 cut(s)	869, 935
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	8 cut(s)	56, 137, 277, 542, 715, 779, 787, 899
Bsp1286I	GDGCHC	5 cut(s)	41, 528, 1072, 1182, 1208
Bsp143I	GATC	1 cut(s)	968
Bsp19I	CCATGG	2 cut(s)	944, 1234
BspANI	GGCC	8 cut(s)	56, 137, 277, 542, 715, 779, 787, 899
BspCNI	CTCAG	4 cut(s)	102, 745, 1281, 1296
BspFNI	CGCG	2 cut(s)	494, 1029
BspLI	GGNNCC	3 cut(s)	714, 764, 1145
BspQI	GCTCTTC	1 cut(s)	1196
BspT107I	GGYRCC	1 cut(s)	1143
BsrDI	GCAATG	1 cut(s)	1038
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	3 cut(s)	487, 944, 1234
BssMI	GATC	1 cut(s)	968
BssT1I	CCWWGG	2 cut(s)	944, 1234
Bst4CI	ACNGT	2 cut(s)	354, 479
Bst6I	CTCTTC	2 cut(s)	1098, 1196
BstC8I	GCNNGC	5 cut(s)	10, 334, 496, 544, 1148
BstDEI	CTNAG	5 cut(s)	33, 89, 753, 1289, 1304
BstDSI	CCRYGG	3 cut(s)	487, 944, 1234
BstF5I	GGATG	6 cut(s)	393, 788, 979, 1252, 1269, 1276
BstFNI	CGCG	2 cut(s)	494, 1029
BstH2I	RGCGCY	2 cut(s)	520, 795
BstHHI	GCGC	4 cut(s)	494, 519, 794, 1031
BstKTI	GATC	1 cut(s)	971
BstMAI	GTCTC	2 cut(s)	116, 778
BstMBI	GATC	1 cut(s)	968
BstMCI	CGRYCG	2 cut(s)	278, 780
BstMWI	GCNNNNNNNGC	8 cut(s)	18, 21, 306, 329, 491, 523, 548, 557
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	620
BstUI	CGCG	2 cut(s)	494, 1029
BstV1I	GCAGC	6 cut(s)	41, 451, 454, 639, 1090, 1137
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstZI	CGGCCG	2 cut(s)	275, 777
BsuRI	GGCC	8 cut(s)	56, 137, 277, 542, 715, 779, 787, 899
BtgI	CCRYGG	3 cut(s)	487, 944, 1234
BtsCI	GGATG	6 cut(s)	393, 788, 979, 1252, 1269, 1276
BtsI	GCAGTG	1 cut(s)	1100
BtsIMutI	CAGTG	2 cut(s)	131, 1100
Cac8I	GCNNGC	5 cut(s)	10, 334, 496, 544, 1148
CaiI	CAGNNNCTG	1 cut(s)	1084
CfoI	GCGC	4 cut(s)	494, 519, 794, 1031
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	5 cut(s)	136, 357, 713, 786, 869
Csp6I	GTAC	2 cut(s)	1019, 1274
CviAII	CATG	5 cut(s)	373, 796, 945, 1183, 1235
CviQI	GTAC	2 cut(s)	1019, 1274
DdeI	CTNAG	5 cut(s)	33, 89, 753, 1289, 1304
DpnI	GATC	1 cut(s)	970
DpnII	GATC	1 cut(s)	968
EaeI	YGGCCR	2 cut(s)	275, 777
EagI	CGGCCG	2 cut(s)	275, 777
Eam1104I	CTCTTC	2 cut(s)	1098, 1196
EarI	CTCTTC	2 cut(s)	1098, 1196
EciI	GGCGGA	2 cut(s)	319, 995
Ecl136II	GAGCTC	1 cut(s)	1206
EclXI	CGGCCG	2 cut(s)	275, 777
Eco130I	CCWWGG	2 cut(s)	944, 1234
Eco147I	AGGCCT	1 cut(s)	542
Eco24I	GRGCYC	4 cut(s)	528, 1072, 1182, 1208
Eco47I	GGWCC	2 cut(s)	357, 869
Eco52I	CGGCCG	2 cut(s)	275, 777
Eco53kI	GAGCTC	1 cut(s)	1206
EcoICRI	GAGCTC	1 cut(s)	1206
EcoT14I	CCWWGG	2 cut(s)	944, 1234
EcoT38I	GRGCYC	4 cut(s)	528, 1072, 1182, 1208
ErhI	CCWWGG	2 cut(s)	944, 1234
FaeI	CATG	5 cut(s)	376, 799, 948, 1186, 1238
FaqI	GGGAC	2 cut(s)	869, 935
FatI	CATG	5 cut(s)	372, 795, 944, 1182, 1234
FokI	GGATG	6 cut(s)	380, 795, 986, 1259, 1276, 1283
FriOI	GRGCYC	4 cut(s)	528, 1072, 1182, 1208
FspBI	CTAG	4 cut(s)	194, 293, 852, 1089
GlaI	GCGC	4 cut(s)	493, 518, 793, 1030
GsaI	CCCAGC	1 cut(s)	792
HaeII	RGCGCY	2 cut(s)	520, 795
HaeIII	GGCC	8 cut(s)	56, 137, 277, 542, 715, 779, 787, 899
HapII	CCGG	4 cut(s)	9, 607, 622, 780
HhaI	GCGC	4 cut(s)	494, 519, 794, 1031
Hin1II	CATG	5 cut(s)	376, 799, 948, 1186, 1238
Hin6I	GCGC	4 cut(s)	492, 517, 792, 1029
HinP1I	GCGC	4 cut(s)	492, 517, 792, 1029
HincII	GTYRAC	2 cut(s)	95, 1045
HindII	GTYRAC	2 cut(s)	95, 1045
HinfI	GANTC	7 cut(s)	347, 530, 749, 806, 848, 923, 1291
HpaII	CCGG	4 cut(s)	9, 607, 622, 780
HphI	GGTGA	3 cut(s)	586, 713, 1268
Hpy166II	GTNNAC	3 cut(s)	95, 748, 1045
Hpy188I	TCNGA	5 cut(s)	379, 613, 754, 822, 973
Hpy188III	TCNNGA	1 cut(s)	247
Hpy8I	GTNNAC	3 cut(s)	95, 748, 1045
HpyCH4III	ACNGT	2 cut(s)	354, 479
HpyCH4V	TGCA	2 cut(s)	470, 1153
HpyF10VI	GCNNNNNNNGC	8 cut(s)	18, 21, 306, 329, 491, 523, 548, 557
HpyF3I	CTNAG	5 cut(s)	33, 89, 753, 1289, 1304
Hsp92II	CATG	5 cut(s)	376, 799, 948, 1186, 1238
HspAI	GCGC	4 cut(s)	492, 517, 792, 1029
KroI	GCCGGC	1 cut(s)	8
KroNI	GCCGGC	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	968
LguI	GCTCTTC	1 cut(s)	1196
LmnI	GCTCC	1 cut(s)	1219
Lsp1109I	GCAGC	6 cut(s)	41, 451, 454, 639, 1090, 1137
MaeI	CTAG	4 cut(s)	194, 293, 852, 1089
MaeIII	GTNAC	2 cut(s)	590, 1135
MalI	GATC	1 cut(s)	970
MboI	GATC	1 cut(s)	968
MboII	GAAGA	2 cut(s)	1115, 1213
MhlI	GDGCHC	5 cut(s)	41, 528, 1072, 1182, 1208
MluCI	AATT	7 cut(s)	441, 451, 471, 584, 658, 1012, 1156
MlyI	GAGTC	5 cut(s)	341, 524, 743, 917, 1300
MroNI	GCCGGC	1 cut(s)	8
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	2 cut(s)	953, 1011
MslI	CAYNNNNRTG	1 cut(s)	295
MspI	CCGG	4 cut(s)	9, 607, 622, 780
MspR9I	CCNGG	1 cut(s)	622
Mva1269I	GAATGC	1 cut(s)	302
MvnI	CGCG	2 cut(s)	494, 1029
MwoI	GCNNNNNNNGC	8 cut(s)	18, 21, 306, 329, 491, 523, 548, 557
NaeI	GCCGGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	622
NcoI	CCATGG	2 cut(s)	944, 1234
NdeII	GATC	1 cut(s)	968
NgoMIV	GCCGGC	1 cut(s)	8
NlaIII	CATG	5 cut(s)	376, 799, 948, 1186, 1238
NlaIV	GGNNCC	3 cut(s)	714, 764, 1145
NmeAIII	GCCGAG	2 cut(s)	572, 755
NspI	RCATGY	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	542
PciSI	GCTCTTC	1 cut(s)	1196
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	302
PdiI	GCCGGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	806, 848
PleI	GAGTC	5 cut(s)	341, 524, 743, 917, 1299
PpsI	GAGTC	5 cut(s)	341, 524, 743, 917, 1299
Psp124BI	GAGCTC	1 cut(s)	1208
PspFI	CCCAGC	1 cut(s)	788
PspN4I	GGNNCC	3 cut(s)	714, 764, 1145
PspPI	GGNCC	5 cut(s)	136, 357, 713, 786, 869
PstNI	CAGNNNCTG	1 cut(s)	1084
RsaI	GTAC	2 cut(s)	1020, 1275
RsaNI	GTAC	2 cut(s)	1019, 1274
RseI	CAYNNNNRTG	1 cut(s)	295
SacI	GAGCTC	1 cut(s)	1208
SapI	GCTCTTC	1 cut(s)	1196
SaqAI	TTAA	2 cut(s)	953, 1011
Sau3AI	GATC	1 cut(s)	968
Sau96I	GGNCC	5 cut(s)	136, 357, 713, 786, 869
SchI	GAGTC	5 cut(s)	341, 524, 743, 917, 1300
ScrFI	CCNGG	1 cut(s)	622
SduI	GDGCHC	5 cut(s)	41, 528, 1072, 1182, 1208
SinI	GGWCC	2 cut(s)	357, 869
SmiMI	CAYNNNNRTG	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	1207
SmoI	CTYRAG	1 cut(s)	1207
Sse9I	AATT	7 cut(s)	441, 451, 471, 584, 658, 1012, 1156
SseBI	AGGCCT	1 cut(s)	542
SspMI	CTAG	4 cut(s)	194, 293, 852, 1089
SstI	GAGCTC	1 cut(s)	1208
StuI	AGGCCT	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	620
StyI	CCWWGG	2 cut(s)	944, 1234
TaaI	ACNGT	2 cut(s)	354, 479
TaqI	TCGA	5 cut(s)	345, 528, 600, 804, 1113
TasI	AATT	7 cut(s)	441, 451, 471, 584, 658, 1012, 1156
TatI	WGTACW	1 cut(s)	1273
TauI	GCSGC	5 cut(s)	15, 24, 280, 312, 1283
TfiI	GAWTC	2 cut(s)	806, 848
Tru1I	TTAA	2 cut(s)	953, 1011
Tru9I	TTAA	2 cut(s)	953, 1011
TscAI	CASTG	2 cut(s)	138, 1100
TseI	GCWGC	7 cut(s)	5, 29, 464, 467, 652, 1078, 1150
TspDTI	ATGAA	2 cut(s)	812, 984
TspGWI	ACGGA	1 cut(s)	806
TspRI	CASTG	2 cut(s)	138, 1100
VpaK11BI	GGWCC	2 cut(s)	357, 869
XceI	RCATGY	1 cut(s)	376
XcmI	CCANNNNNNNNNTGG	2 cut(s)	297, 457
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	4 cut(s)	194, 293, 852, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.