Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006156

Physical Location & Seq

Genomic Coordinates Reverse (-)

27502021 .. 27503834

Gene Structure 1814 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G73140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGTCTATACAAACAACTGCAGATTCGAGGATGATTCAATCCATCTTCCAAGTTGTGCTTGTTAGTCTTCTAGTTCTAGGATCCGTGAGATGGATACTTGATGAACTCAAGAGCAAAGAAAGTCGAATATCCAAACTATATGGTTTCAGACAGAAAGAGGCAGTGTTTGTCACTAAAGAGGATCAGCTTGATGAGAGCTGCAATGTCTTTGAAGGACAATGGGTTTGGGACAATGTCTCTTATCCTCTTTATACAGAGAAGAGCTGTCCTTATTTAGTCAAACAAACAACATGTCAACGAAATGGACGGCCTGATTCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACTTGCCAAGGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTTCATAGGAGACTCAGTGCAGAGAAGCACGTTCGAGTCAATGGTCTGTATGGTGCAATCAGTAATTCCTGAGAAGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAGGAATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCGATTTCAGATCATGCAACTAATCATACAGTACACAAAAGGTTGGTTAAGCTCGACGCCATTGAAAAACATAGCAAGAGCTGGGAAGGGGTTGATGTTCTAGTCTTTGAGAGCTATGTATGGTGGATGCATCAACCTAAGATCAATGCAACGTATGGAGATACCAGTGAAGTCCGAGAGTATAATGTGACGACTGCTTATAAAATGGCGTTAGAAACATGGGCCAAGTGGTTTAAGACGAAGATCAATTCCGAGAAGCAAAAAGTTTTCTTCACGAGTATGTCTCCGACTCATCTATGGAGCTGGGAGTGGAATCCAGGGAGCGATGGAACCTGTTATGATGAGTTATATCCAATAGACAAAAGATCATATTGGGGTACAGGATCAAATCAAGAAATCATGAAGATTGTTGGTGATGTTCTAAGCAGAGTTGGAGAAAATGTCACGTTCCTGAACATTACGCAACTGTCGGAATACAGGAAAGATGGACATACGACTGTGTATGGAGAACGGAGAGGGAAGCTCTTGACAAAGGAACAGAGAGCTGATCCGAAAAACTATGGAGATTGCATCCACTGGTGTTTGCCAGGAGTTCCTGATACATGGAATGAGATTCTCTATGCATATTTGCTTCGCAGTCACCGCAATTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

413

Amino Acids

48.59

Weight (kDa)

8.57

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	65 - 119	3.4e-22	PMR5 N terminal Domain
PC-Esterase	PF13839	120 - 403	6.2e-91	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73140
fragaria_vesca	FvH4_3g18650 FvH4_3g18650
malus_domestica	MD03G1240300.v1.1
prunus_persica	Prupe.4G170300_v2.0.a1 Prupe.4G170300_v2.0.a1
pyrus_communis	pycom03g18550
rosa_chinensis	RchiOBHm_Chr5g0031471 RchiOBHm_Chr7g0217351
rosa_laevigata	RLG00000033269 RLG00000033270 RLG00000033310
rosa_multiflora	Rmu_sc0000404.1_g000003 Rmu_sc0011824.1_g000011 Rmu_sc0038917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048860 Rroxscaffold_3G00242310
rosa_rugosa	Rorug05G0126000 Rorug05G0126100 Rorug07G0168300
rosa_samantha	Rh5AG218900 Rh5BG218200 Rh5CG241900 Rh5DG223500 Rh7BG298600
rosa_wichuraiana	Rw5G019970 Rw7G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	786
AccB1I	GGYRCC	1 cut(s)	568
AciI	CCGC	1 cut(s)	1228
AclWI	GGATC	5 cut(s)	75, 88, 189, 976, 1127
AcyI	GRCGYC	1 cut(s)	642
AfaI	GTAC	2 cut(s)	618, 964
AfiI	CCNNNNNNNGG	2 cut(s)	90, 504
AflIII	ACRYGT	2 cut(s)	290, 390
AgsI	TTSAA	5 cut(s)	38, 212, 370, 529, 650
AjiI	CACGTC	1 cut(s)	391
AjnI	CCWGG	2 cut(s)	901, 1171
Alw21I	GWGCWC	1 cut(s)	350
Alw26I	GTCTC	3 cut(s)	241, 417, 873
AlwI	GGATC	5 cut(s)	75, 88, 189, 976, 1127
AoxI	GGCC	2 cut(s)	308, 807
ApeKI	GCWGC	1 cut(s)	198
ArsI	GACNNNNNNTTYG	4 cut(s)	207, 239, 277, 309
Asp700I	GAANNNNTTC	2 cut(s)	497, 524
AspS9I	GGNCC	1 cut(s)	807
AsuHPI	GGTGA	2 cut(s)	1010, 1217
BaeGI	GKGCMC	1 cut(s)	571
BamHI	GGATCC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	350
BauI	CACGAG	1 cut(s)	859
BbsI	GAAGAC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	350
BbvCI	CCTCAGC	1 cut(s)	534
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	6 cut(s)	50, 84, 330, 560, 905, 1064
BceAI	ACGGC	1 cut(s)	323
BciT130I	CCWGG	2 cut(s)	903, 1173
BciVI	GTATCC	1 cut(s)	87
BcoDI	GTCTC	3 cut(s)	241, 417, 873
BfaI	CTAG	3 cut(s)	71, 77, 686
BfmI	CTRYAG	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	87
BglII	AGATCT	1 cut(s)	522
BisI	GCNGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	200
Bme1390I	CCNGG	2 cut(s)	903, 1173
BmgBI	CACGTC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	807
BmiI	GGNNCC	3 cut(s)	82, 570, 916
BmrFI	CCNGG	2 cut(s)	903, 1173
BmrI	ACTGGG	1 cut(s)	574
BmsI	GCATC	4 cut(s)	557, 702, 724, 1164
BmuI	ACTGGG	1 cut(s)	574
BpiI	GAAGAC	1 cut(s)	59
BplI	GAGNNNNNCTC	4 cut(s)	853, 885, 1092, 1124
BpmI	CTGGAG	1 cut(s)	352
Bpu10I	CCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	92
Bsa29I	ATCGAT	1 cut(s)	587
BsaHI	GRCGYC	1 cut(s)	642
BsaJI	CCNNGG	2 cut(s)	362, 902
BsaXI	ACNNNNNCTCC	4 cut(s)	414, 444, 1011, 1041
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 504
Bse1I	ACTGG	4 cut(s)	335, 569, 750, 1166
Bse3DI	GCAATG	1 cut(s)	208
BseBI	CCWGG	2 cut(s)	903, 1173
BseCI	ATCGAT	1 cut(s)	587
BseDI	CCNNGG	2 cut(s)	362, 902
BseGI	GGATG	4 cut(s)	36, 548, 717, 1155
BseLI	CCNNNNNNNGG	2 cut(s)	90, 504
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	3 cut(s)	441, 474, 525
BseNI	ACTGG	4 cut(s)	335, 569, 750, 1166
BseSI	GKGCMC	1 cut(s)	571
BseXI	GCAGC	1 cut(s)	185
BseYI	CCCAGC	2 cut(s)	666, 888
BsgI	GTGCAG	1 cut(s)	452
BshFI	GGCC	2 cut(s)	310, 809
BshNI	GGYRCC	1 cut(s)	568
BshVI	ATCGAT	1 cut(s)	587
BsiHKAI	GWGCWC	1 cut(s)	350
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	90, 504
BsmAI	GTCTC	3 cut(s)	241, 417, 873
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	2 cut(s)	310, 809
Bsp1286I	GDGCHC	2 cut(s)	350, 571
Bsp143I	GATC	9 cut(s)	80, 181, 522, 595, 726, 828, 950, 968, 1132
BspACI	CCGC	1 cut(s)	1228
BspANI	GGCC	2 cut(s)	310, 809
BspCNI	CTCAG	3 cut(s)	440, 475, 526
BspDI	ATCGAT	1 cut(s)	587
BspHI	TCATGA	1 cut(s)	984
BspLI	GGNNCC	3 cut(s)	82, 570, 916
BspMAI	CTGCAG	1 cut(s)	22
BspPI	GGATC	5 cut(s)	75, 88, 189, 976, 1127
BspQI	GCTCTTC	1 cut(s)	254
BspT107I	GGYRCC	1 cut(s)	568
BsrDI	GCAATG	1 cut(s)	208
BsrI	ACTGG	4 cut(s)	335, 569, 750, 1166
BssECI	CCNNGG	2 cut(s)	362, 902
BssMI	GATC	9 cut(s)	80, 181, 522, 595, 726, 828, 950, 968, 1132
BssNI	GRCGYC	1 cut(s)	642
BssSI	CACGAG	1 cut(s)	859
BssT1I	CCWWGG	1 cut(s)	362
Bst2BI	CACGAG	1 cut(s)	859
Bst2UI	CCWGG	2 cut(s)	903, 1173
Bst4CI	ACNGT	4 cut(s)	384, 616, 1053, 1084
Bst6I	CTCTTC	1 cut(s)	254
BstACI	GRCGYC	1 cut(s)	642
BstDEI	CTNAG	5 cut(s)	427, 483, 534, 723, 1007
BstENI	CCTNNNNNAGG	1 cut(s)	502
BstF5I	GGATG	4 cut(s)	36, 548, 717, 1155
BstKTI	GATC	9 cut(s)	83, 184, 525, 598, 729, 831, 953, 971, 1135
BstMAI	GTCTC	3 cut(s)	241, 417, 873
BstMBI	GATC	9 cut(s)	80, 181, 522, 595, 726, 828, 950, 968, 1132
BstMWI	GCNNNNNNNGC	1 cut(s)	1227
BstNI	CCWGG	2 cut(s)	903, 1173
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	2 cut(s)	901, 1171
BstSFI	CTRYAG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	571
BstV1I	GCAGC	1 cut(s)	185
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	2 cut(s)	80, 522
BstYI	RGATCY	2 cut(s)	80, 522
Bsu15I	ATCGAT	1 cut(s)	587
BsuI	GTATCC	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	310, 809
BsuTUI	ATCGAT	1 cut(s)	587
BtgZI	GCGATG	1 cut(s)	924
BtrI	CACGTC	1 cut(s)	391
BtsCI	GGATG	4 cut(s)	36, 548, 717, 1155
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	4 cut(s)	168, 435, 757, 1159
CciI	TCATGA	1 cut(s)	984
Cfr13I	GGNCC	1 cut(s)	807
ClaI	ATCGAT	1 cut(s)	587
CseI	GACGC	1 cut(s)	650
Csp6I	GTAC	2 cut(s)	617, 963
CviAII	CATG	6 cut(s)	291, 351, 599, 804, 985, 1188
CviQI	GTAC	2 cut(s)	617, 963
DdeI	CTNAG	5 cut(s)	427, 483, 534, 723, 1007
DpnI	GATC	9 cut(s)	82, 183, 524, 597, 728, 830, 952, 970, 1134
DpnII	GATC	9 cut(s)	80, 181, 522, 595, 726, 828, 950, 968, 1132
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	350
Eco53kI	GAGCTC	1 cut(s)	348
EcoICRI	GAGCTC	1 cut(s)	348
EcoNI	CCTNNNNNAGG	1 cut(s)	502
EcoRII	CCWGG	2 cut(s)	901, 1171
EcoT14I	CCWWGG	1 cut(s)	362
EcoT22I	ATGCAT	3 cut(s)	550, 717, 1210
EcoT38I	GRGCYC	1 cut(s)	350
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	6 cut(s)	294, 354, 602, 807, 988, 1191
FalI	AAGNNNNNCTT	4 cut(s)	42, 74, 482, 514
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	6 cut(s)	290, 350, 598, 803, 984, 1187
Fnu4HI	GCNGC	1 cut(s)	199
FokI	GGATG	4 cut(s)	43, 535, 724, 1142
FriOI	GRGCYC	1 cut(s)	350
Fsp4HI	GCNGC	1 cut(s)	199
FspBI	CTAG	3 cut(s)	71, 77, 686
GluI	GCNGC	1 cut(s)	199
GsaI	CCCAGC	2 cut(s)	670, 892
GsuI	CTGGAG	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	310, 809
HgaI	GACGC	1 cut(s)	650
Hin1I	GRCGYC	1 cut(s)	642
Hin1II	CATG	6 cut(s)	294, 354, 602, 807, 988, 1191
HincII	GTYRAC	1 cut(s)	296
HindII	GTYRAC	1 cut(s)	296
HphI	GGTGA	2 cut(s)	1010, 1217
Hpy166II	GTNNAC	2 cut(s)	296, 619
Hpy188I	TCNGA	9 cut(s)	149, 378, 595, 761, 838, 873, 1057, 1137, 1241
Hpy188III	TCNNGA	8 cut(s)	109, 482, 859, 977, 985, 1036, 1111, 1181
Hpy8I	GTNNAC	2 cut(s)	296, 619
Hpy99I	CGWCG	1 cut(s)	644
HpyAV	CCTTC	3 cut(s)	206, 508, 665
HpyCH4III	ACNGT	4 cut(s)	384, 616, 1053, 1084
HpyCH4IV	ACGT	4 cut(s)	390, 443, 737, 1031
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1227
HpyF3I	CTNAG	5 cut(s)	427, 483, 534, 723, 1007
HpySE526I	ACGT	4 cut(s)	390, 443, 737, 1031
Hsp92I	GRCGYC	1 cut(s)	642
Hsp92II	CATG	6 cut(s)	294, 354, 602, 807, 988, 1191
Kzo9I	GATC	9 cut(s)	80, 181, 522, 595, 726, 828, 950, 968, 1132
LguI	GCTCTTC	1 cut(s)	254
LmnI	GCTCC	2 cut(s)	885, 906
Lsp1109I	GCAGC	1 cut(s)	185
LweI	GCATC	4 cut(s)	557, 702, 724, 1164
MaeI	CTAG	3 cut(s)	71, 77, 686
MaeII	ACGT	4 cut(s)	390, 443, 737, 1031
MaeIII	GTNAC	4 cut(s)	169, 772, 1027, 1223
MalI	GATC	9 cut(s)	82, 183, 524, 597, 728, 830, 952, 970, 1134
MboI	GATC	9 cut(s)	80, 181, 522, 595, 726, 828, 950, 968, 1132
MflI	RGATCY	2 cut(s)	80, 522
MhlI	GDGCHC	2 cut(s)	350, 571
MluCI	AATT	3 cut(s)	477, 832, 1231
MlyI	GAGTC	3 cut(s)	419, 458, 868
MmeI	TCCRAC	4 cut(s)	366, 896, 997, 1035
MnlI	CCTC	7 cut(s)	21, 151, 172, 255, 522, 529, 1094
Mph1103I	ATGCAT	3 cut(s)	550, 717, 1210
MroXI	GAANNNNTTC	2 cut(s)	497, 524
MseI	TTAA	2 cut(s)	633, 819
MslI	CAYNNNNRTG	1 cut(s)	863
MspR9I	CCNGG	2 cut(s)	903, 1173
MvaI	CCWGG	2 cut(s)	903, 1173
MwoI	GCNNNNNNNGC	1 cut(s)	1227
NdeII	GATC	9 cut(s)	80, 181, 522, 595, 726, 828, 950, 968, 1132
NlaIII	CATG	6 cut(s)	294, 354, 602, 807, 988, 1191
NlaIV	GGNNCC	3 cut(s)	82, 570, 916
NmuCI	GTSAC	4 cut(s)	169, 772, 1027, 1223
NsiI	ATGCAT	3 cut(s)	550, 717, 1210
NspI	RCATGY	1 cut(s)	294
PagI	TCATGA	1 cut(s)	984
PciI	ACATGT	1 cut(s)	290
PciSI	GCTCTTC	1 cut(s)	254
PdmI	GAANNNNTTC	2 cut(s)	497, 524
PfeI	GAWTC	7 cut(s)	23, 34, 314, 508, 584, 898, 1198
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	200
PleI	GAGTC	3 cut(s)	419, 457, 868
PpsI	GAGTC	3 cut(s)	419, 457, 868
PscI	ACATGT	1 cut(s)	290
PsiI	TTATAA	1 cut(s)	786
Psp124BI	GAGCTC	1 cut(s)	350
Psp6I	CCWGG	2 cut(s)	901, 1171
PspFI	CCCAGC	2 cut(s)	666, 888
PspGI	CCWGG	2 cut(s)	901, 1171
PspN4I	GGNNCC	3 cut(s)	82, 570, 916
PspPI	GGNCC	1 cut(s)	807
PstI	CTGCAG	1 cut(s)	22
PsuI	RGATCY	2 cut(s)	80, 522
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	2 cut(s)	618, 964
RsaNI	GTAC	2 cut(s)	617, 963
RseI	CAYNNNNRTG	1 cut(s)	863
SacI	GAGCTC	1 cut(s)	350
SapI	GCTCTTC	1 cut(s)	254
SaqAI	TTAA	2 cut(s)	633, 819
SatI	GCNGC	1 cut(s)	199
Sau3AI	GATC	9 cut(s)	80, 181, 522, 595, 726, 828, 950, 968, 1132
Sau96I	GGNCC	1 cut(s)	807
SchI	GAGTC	3 cut(s)	419, 458, 868
ScrFI	CCNGG	2 cut(s)	903, 1173
SduI	GDGCHC	2 cut(s)	350, 571
SfaNI	GCATC	4 cut(s)	557, 702, 724, 1164
SfcI	CTRYAG	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	863
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	3 cut(s)	477, 832, 1231
SsiI	CCGC	1 cut(s)	1228
SspMI	CTAG	3 cut(s)	71, 77, 686
SstI	GAGCTC	1 cut(s)	350
StyD4I	CCNGG	2 cut(s)	901, 1171
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	4 cut(s)	384, 616, 1053, 1084
TaiI	ACGT	4 cut(s)	393, 446, 740, 1034
TaqI	TCGA	6 cut(s)	26, 124, 447, 555, 587, 639
TasI	AATT	3 cut(s)	477, 832, 1231
TatI	WGTACW	1 cut(s)	616
TfiI	GAWTC	7 cut(s)	23, 34, 314, 508, 584, 898, 1198
Tru1I	TTAA	2 cut(s)	633, 819
Tru9I	TTAA	2 cut(s)	633, 819
TscAI	CASTG	4 cut(s)	168, 435, 757, 1166
TseFI	GTSAC	4 cut(s)	169, 772, 1027, 1223
TseI	GCWGC	1 cut(s)	198
Tsp45I	GTSAC	4 cut(s)	169, 772, 1027, 1223
TspDTI	ATGAA	5 cut(s)	117, 406, 533, 565, 1001
TspGWI	ACGGA	2 cut(s)	73, 1111
TspRI	CASTG	4 cut(s)	168, 435, 757, 1166
Tth111I	GACNNNGTC	1 cut(s)	233
XagI	CCTNNNNNAGG	1 cut(s)	502
XceI	RCATGY	1 cut(s)	294
XmnI	GAANNNNTTC	2 cut(s)	497, 524
XspI	CTAG	3 cut(s)	71, 77, 686
Zsp2I	ATGCAT	3 cut(s)	550, 717, 1210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.