Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011824.1

Orthogroup ID

OG0006156

Physical Location & Seq

Genomic Coordinates Reverse (-)

41853 .. 43117

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011824.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgtgcctcacattatttttctggagcatcaccttctacaaggccatcagattggcagattggagctcagttgtagttcataccagcgtaactggcattcgttttgaattctggtttgatccattgaagctactacaaattttgaggggcaaaagactgatgtttgttggagattcggagttcgatgcctccattgagtactactgggctccctttattgtggagtcaatttcggatcatgcaacgaagcatactgtactaaaacggttggtgaagctcgactccatagctaagcatggcaagcactgggaaggagtagatattttggtgtttgagagctacgtatggtggatgcacaagcctacaaacaatgctacatatggatctccaaatgatgtccaagaatataatgtcactactgtgtataaattggtattacagacttgggcagaatggttagaatcaagaataaacccagaaaggcaaaaggtcttcttcatgagtatgtctccaacacttctatggagctgggaatggaggcctggcagtgatgaaaactgctacaatgagtcccatccaattcaaggttcatattggggtactggttcgagcaccaaaatcatggatattatagatgacacgttacaggaaagatgcacacaatttttgaatatcacacaattgtctgagtacagaaaagatgcacacacatcagtttatggggaacgcgagggcaagctcctgacaaaggaacaaaaatctgctccaaaaaacttcgcagattgcattcactggtgcttccctggagttccagatacatggaacgaaattttgtacgcacatttgttaaagagtcatcaaaaatttttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

290

Amino Acids

34.12

Weight (kDa)

6.26

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73140
fragaria_vesca	FvH4_3g18650 FvH4_3g18650
malus_domestica	MD03G1240300.v1.1
prunus_persica	Prupe.4G170300_v2.0.a1 Prupe.4G170300_v2.0.a1
pyrus_communis	pycom03g18550
rosa_chinensis	RchiOBHm_Chr5g0031471 RchiOBHm_Chr7g0217351
rosa_laevigata	RLG00000033269 RLG00000033270 RLG00000033310
rosa_multiflora	Rmu_sc0000404.1_g000003 Rmu_sc0011824.1_g000011 Rmu_sc0038917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048860 Rroxscaffold_3G00242310
rosa_rugosa	Rorug05G0126000 Rorug05G0126100 Rorug07G0168300
rosa_samantha	Rh5AG218900 Rh5BG218200 Rh5CG241900 Rh5DG223500 Rh7BG298600
rosa_wichuraiana	Rw5G019970 Rw7G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	729
AclWI	GGATC	3 cut(s)	113, 243, 391
AcsI	RAATTY	4 cut(s)	107, 138, 828, 863
AfaI	GTAC	5 cut(s)	200, 258, 601, 692, 836
AfiI	CCNNNNNNNGG	2 cut(s)	584, 748
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	4 cut(s)	107, 127, 584, 670
AjnI	CCWGG	2 cut(s)	541, 802
AjuI	GAANNNNNNNTTGG	2 cut(s)	571, 603
AleI	CACNNNNGTG	1 cut(s)	419
AluBI	AGCT	7 cut(s)	66, 130, 277, 290, 339, 528, 739
AluI	AGCT	7 cut(s)	66, 130, 277, 290, 339, 528, 739
Alw21I	GWGCWC	2 cut(s)	68, 614
Alw26I	GTCTC	1 cut(s)	513
AlwI	GGATC	3 cut(s)	113, 243, 391
AoxI	GGCC	2 cut(s)	42, 539
ApoI	RAATTY	4 cut(s)	107, 138, 828, 863
AsuHPI	GGTGA	2 cut(s)	22, 283
BanII	GRGCYC	2 cut(s)	68, 211
BbsI	GAAGAC	1 cut(s)	484
Bbv12I	GWGCWC	2 cut(s)	68, 614
BccI	CCATC	2 cut(s)	53, 582
BciT130I	CCWGG	2 cut(s)	543, 804
BcoDI	GTCTC	1 cut(s)	513
BlpI	GCTNAGC	1 cut(s)	291
BmcAI	AGTACT	1 cut(s)	200
Bme1390I	CCNGG	2 cut(s)	543, 804
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	2 cut(s)	543, 804
BmrI	ACTGGG	2 cut(s)	214, 316
BmsI	GCATC	5 cut(s)	36, 175, 342, 644, 691
BmuI	ACTGGG	2 cut(s)	214, 316
BpiI	GAAGAC	1 cut(s)	484
BplI	GAGNNNNNCTC	2 cut(s)	493, 525
BpmI	CTGGAG	2 cut(s)	43, 825
Bpu1102I	GCTNAGC	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	343
BsaJI	CCNNGG	1 cut(s)	802
Bsc4I	CCNNNNNNNGG	2 cut(s)	584, 748
Bse1I	ACTGG	5 cut(s)	97, 209, 311, 607, 797
BseBI	CCWGG	2 cut(s)	543, 804
BseDI	CCNNGG	1 cut(s)	802
BseGI	GGATG	2 cut(s)	357, 574
BseLI	CCNNNNNNNGG	2 cut(s)	584, 748
BseMII	CTCAG	2 cut(s)	81, 678
BseNI	ACTGG	5 cut(s)	97, 209, 311, 607, 797
BseYI	CCCAGC	1 cut(s)	528
Bsh1236I	CGCG	1 cut(s)	729
BshFI	GGCC	2 cut(s)	44, 541
BsiHKAI	GWGCWC	2 cut(s)	68, 614
BslFI	GGGAC	1 cut(s)	556
BslI	CCNNNNNNNGG	2 cut(s)	584, 748
BsmAI	GTCTC	1 cut(s)	513
BsmFI	GGGAC	1 cut(s)	556
BsmI	GAATGC	2 cut(s)	96, 786
BsnI	GGCC	2 cut(s)	44, 541
Bsp1286I	GDGCHC	3 cut(s)	68, 211, 614
Bsp143I	GATC	3 cut(s)	118, 235, 383
Bsp1720I	GCTNAGC	1 cut(s)	291
BspANI	GGCC	2 cut(s)	44, 541
BspCNI	CTCAG	2 cut(s)	80, 679
BspFNI	CGCG	1 cut(s)	729
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	3 cut(s)	113, 243, 391
BsrI	ACTGG	5 cut(s)	97, 209, 311, 607, 797
BssECI	CCNNGG	1 cut(s)	802
BssMI	GATC	3 cut(s)	118, 235, 383
Bst2UI	CCWGG	2 cut(s)	543, 804
Bst4CI	ACNGT	3 cut(s)	256, 267, 421
BstBAI	YACGTR	1 cut(s)	343
BstC8I	GCNNGC	2 cut(s)	302, 737
BstDEI	CTNAG	3 cut(s)	67, 291, 687
BstENI	CCTNNNNNAGG	1 cut(s)	746
BstF5I	GGATG	2 cut(s)	357, 574
BstFNI	CGCG	1 cut(s)	729
BstKTI	GATC	3 cut(s)	121, 238, 386
BstMAI	GTCTC	1 cut(s)	513
BstMBI	GATC	3 cut(s)	118, 235, 383
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 301
BstNI	CCWGG	2 cut(s)	543, 804
BstSCI	CCNGG	2 cut(s)	541, 802
BstSNI	TACGTA	1 cut(s)	343
BstUI	CGCG	1 cut(s)	729
BstV2I	GAAGAC	1 cut(s)	484
BstX2I	RGATCY	1 cut(s)	383
BstXI	CCANNNNNNTGG	3 cut(s)	52, 622, 819
BstYI	RGATCY	1 cut(s)	383
BsuRI	GGCC	2 cut(s)	44, 541
BtsCI	GGATG	2 cut(s)	357, 574
BtsI	GCAGTG	1 cut(s)	553
BtsIMutI	CAGTG	3 cut(s)	304, 553, 790
Cac8I	GCNNGC	2 cut(s)	302, 737
CciI	TCATGA	1 cut(s)	498
Csp6I	GTAC	5 cut(s)	199, 257, 600, 691, 835
CviAII	CATG	5 cut(s)	239, 296, 499, 622, 819
CviQI	GTAC	5 cut(s)	199, 257, 600, 691, 835
DdeI	CTNAG	3 cut(s)	67, 291, 687
DpnI	GATC	3 cut(s)	120, 237, 385
DpnII	GATC	3 cut(s)	118, 235, 383
Ecl136II	GAGCTC	1 cut(s)	66
Eco105I	TACGTA	1 cut(s)	343
Eco147I	AGGCCT	1 cut(s)	541
Eco24I	GRGCYC	2 cut(s)	68, 211
Eco53kI	GAGCTC	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	66
EcoNI	CCTNNNNNAGG	1 cut(s)	746
EcoRI	GAATTC	1 cut(s)	107
EcoRII	CCWGG	2 cut(s)	541, 802
EcoT38I	GRGCYC	2 cut(s)	68, 211
FaeI	CATG	5 cut(s)	242, 299, 502, 625, 822
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FaqI	GGGAC	1 cut(s)	556
FatI	CATG	5 cut(s)	238, 295, 498, 621, 818
FauNDI	CATATG	1 cut(s)	379
FokI	GGATG	2 cut(s)	364, 561
FriOI	GRGCYC	2 cut(s)	68, 211
GsaI	CCCAGC	1 cut(s)	532
GsuI	CTGGAG	2 cut(s)	43, 825
HaeIII	GGCC	2 cut(s)	44, 541
Hin1II	CATG	5 cut(s)	242, 299, 502, 625, 822
HinfI	GANTC	6 cut(s)	173, 224, 281, 461, 569, 853
HphI	GGTGA	2 cut(s)	22, 283
Hpy188I	TCNGA	4 cut(s)	50, 178, 235, 688
Hpy188III	TCNNGA	5 cut(s)	22, 465, 499, 742, 812
HpyAV	CCTTC	2 cut(s)	43, 305
HpyCH4III	ACNGT	3 cut(s)	256, 267, 421
HpyCH4IV	ACGT	2 cut(s)	342, 641
HpyCH4V	TGCA	5 cut(s)	242, 355, 657, 704, 786
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 301
HpyF3I	CTNAG	3 cut(s)	67, 291, 687
HpySE526I	ACGT	2 cut(s)	342, 641
Hsp92II	CATG	5 cut(s)	242, 299, 502, 625, 822
Kzo9I	GATC	3 cut(s)	118, 235, 383
LmnI	GCTCC	6 cut(s)	24, 63, 214, 525, 744, 769
LweI	GCATC	5 cut(s)	36, 175, 342, 644, 691
MaeII	ACGT	2 cut(s)	342, 641
MaeIII	GTNAC	3 cut(s)	88, 412, 642
MalI	GATC	3 cut(s)	120, 237, 385
MboI	GATC	3 cut(s)	118, 235, 383
MboII	GAAGA	2 cut(s)	484, 487
MfeI	CAATTG	1 cut(s)	680
MflI	RGATCY	1 cut(s)	383
MhlI	GDGCHC	3 cut(s)	68, 211, 614
MluCI	AATT	9 cut(s)	107, 138, 228, 428, 579, 662, 680, 828, 863
MlyI	GAGTC	4 cut(s)	233, 275, 578, 862
MmeI	TCCRAC	2 cut(s)	148, 536
MnlI	CCTC	5 cut(s)	17, 138, 199, 531, 724
MseI	TTAA	1 cut(s)	848
MslI	CAYNNNNRTG	3 cut(s)	419, 503, 520
MspR9I	CCNGG	2 cut(s)	543, 804
MunI	CAATTG	1 cut(s)	680
Mva1269I	GAATGC	2 cut(s)	96, 786
MvaI	CCWGG	2 cut(s)	543, 804
MvnI	CGCG	1 cut(s)	729
MwoI	GCNNNNNNNGC	2 cut(s)	93, 301
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	3 cut(s)	118, 235, 383
NlaIII	CATG	5 cut(s)	242, 299, 502, 625, 822
NlaIV	GGNNCC	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	412
OliI	CACNNNNGTG	1 cut(s)	419
PagI	TCATGA	1 cut(s)	498
PceI	AGGCCT	1 cut(s)	541
PctI	GAATGC	2 cut(s)	96, 786
PfeI	GAWTC	2 cut(s)	173, 461
PleI	GAGTC	4 cut(s)	232, 275, 577, 861
PpsI	GAGTC	4 cut(s)	232, 275, 577, 861
Ppu21I	YACGTR	1 cut(s)	343
Psp124BI	GAGCTC	1 cut(s)	68
Psp6I	CCWGG	2 cut(s)	541, 802
PspFI	CCCAGC	1 cut(s)	528
PspGI	CCWGG	2 cut(s)	541, 802
PspN4I	GGNNCC	1 cut(s)	210
PsuI	RGATCY	1 cut(s)	383
RsaI	GTAC	5 cut(s)	200, 258, 601, 692, 836
RsaNI	GTAC	5 cut(s)	199, 257, 600, 691, 835
RseI	CAYNNNNRTG	3 cut(s)	419, 503, 520
SacI	GAGCTC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	848
Sau3AI	GATC	3 cut(s)	118, 235, 383
ScaI	AGTACT	1 cut(s)	200
SchI	GAGTC	4 cut(s)	233, 275, 578, 862
ScrFI	CCNGG	2 cut(s)	543, 804
SduI	GDGCHC	3 cut(s)	68, 211, 614
SfaNI	GCATC	5 cut(s)	36, 175, 342, 644, 691
SmiMI	CAYNNNNRTG	3 cut(s)	419, 503, 520
SnaBI	TACGTA	1 cut(s)	343
Sse9I	AATT	9 cut(s)	107, 138, 228, 428, 579, 662, 680, 828, 863
SseBI	AGGCCT	1 cut(s)	541
SstI	GAGCTC	1 cut(s)	68
StuI	AGGCCT	1 cut(s)	541
StyD4I	CCNGG	2 cut(s)	541, 802
TaaI	ACNGT	3 cut(s)	256, 267, 421
TaiI	ACGT	2 cut(s)	345, 644
TaqI	TCGA	3 cut(s)	183, 279, 608
TasI	AATT	9 cut(s)	107, 138, 228, 428, 579, 662, 680, 828, 863
TatI	WGTACW	3 cut(s)	198, 256, 690
TfiI	GAWTC	2 cut(s)	173, 461
Tru1I	TTAA	1 cut(s)	848
Tru9I	TTAA	1 cut(s)	848
TscAI	CASTG	3 cut(s)	311, 553, 797
TseFI	GTSAC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	4 cut(s)	68, 487, 567, 579
TspRI	CASTG	3 cut(s)	311, 553, 797
XagI	CCTNNNNNAGG	1 cut(s)	746
XapI	RAATTY	4 cut(s)	107, 138, 828, 863
XcmI	CCANNNNNNNNNTGG	1 cut(s)	519
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.