Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006156

Physical Location & Seq

Genomic Coordinates Reverse (-)

10055442 .. 10058604

Gene Structure 3163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G170300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGACAAGGCACCAGCTCTCTCTTGACCGTCGAATCCAATCCCTCTTCCCGGTTGCGTTGGCTTCTCTGCTTGTCCTTGGGACTGCAAAACTAGTGCTCGACGCCTTGAAGACCAATGACAGCTTTGTCTTTCAGCTATATGGCAGGCCAAGAGGTCAACAACAGAGTCCGGCAGTTGTTGTTTCCCCTGAGGACAGGATTGATGAAAGTTGCAATGTGTTTGAAGGGAAATGGGTGTGGGACAATGTGTCCCATCCACACTATACAGAAGAGAGCTGTCCTTACTTGGTAAAGCAAGTTACTTGCCAAAGAAATGGTAGGCCTGATTCTTACTATAAGAATTGGAGGTGGCAACCTAATGACTGCAACCTCCCAAGGTTTGATCCATTGAAGCTAATGCAGATTTTGAGGGGTAAAAGGCTGATGTTTGTTGGAGACTCTGTACAGAGAGGGCAGTTTGAATCCCTAGTCTGTATGGTTCAATCTATAATTCCTCAAGGAAAGAAATCTCTCCAAAGGGCCCCTCCCAGAAAGATCTTCAAAGTTGAGGAGTTTGATGCATCCATTGAATACTATTGGGCTCCATTTATTGTGGAGTCGATTTCGGACCATGCAACAAAACATACTGTACTGAAACGGCTGGTGAAGCTAGACTCTATAGCTAAGCATGGAAAACACTGGGAAGGAGTAGATATCTTGGTGTTCGAGAGCTATGTATGGTGGATGCACAAGCCTACCATCAATGCTACATATGGATCTCCTGATGTCCAAGAATATAATGTCACTACAGCATACAGACTGGCGTTACAAACTTGGGCAGAATGGTTGGAATCCAGCATCAACCCTGAGAGACAAAAGGTCTTCTTCATGAGTATGTCTCCAACACATTTATGGAGTTGGGAATGGAAGGCTGGAAGTGATGAGAACTGCTTCAACGAGTCTTACCCAATTCAAGGTTCATATTGGGGTACTGGTTCAAACATGGAAATCATGGAAATGATACACGACCAAATACAGGATTTGAAAGTGAAGGTAACATTTTTGAATATTACCCAGTTGTCAGAGTACCGAAAAGACGCACATACATCCATATACGGGGAACGCAAGGGGAAGCTCTTGACAAAGGAACAAAGATCTGATCCTAAAAATTTTGCTGATTGCATTCACTGGTGCCTACCTGGGGTTCCTGATACATGGAATGAGATTTTGTATGCACATTTGTTAAAGAGCCATCAAAATCTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

416

Amino Acids

48.38

Weight (kDa)

7.63

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73140
fragaria_vesca	FvH4_3g18650 FvH4_3g18650
malus_domestica	MD03G1240300.v1.1
prunus_persica	Prupe.4G170300_v2.0.a1 Prupe.4G170300_v2.0.a1
pyrus_communis	pycom03g18550
rosa_chinensis	RchiOBHm_Chr5g0031471 RchiOBHm_Chr7g0217351
rosa_laevigata	RLG00000033269 RLG00000033270 RLG00000033310
rosa_multiflora	Rmu_sc0000404.1_g000003 Rmu_sc0011824.1_g000011 Rmu_sc0038917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048860 Rroxscaffold_3G00242310
rosa_rugosa	Rorug05G0126000 Rorug05G0126100 Rorug07G0168300
rosa_samantha	Rh5AG218900 Rh5BG218200 Rh5CG241900 Rh5DG223500 Rh7BG298600
rosa_wichuraiana	Rw5G019970 Rw7G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
AccB1I	GGYRCC	2 cut(s)	9, 1170
AclWI	GGATC	3 cut(s)	377, 763, 1133
AcsI	RAATTY	1 cut(s)	1147
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	4 cut(s)	444, 630, 970, 1067
AfiI	CCNNNNNNNGG	5 cut(s)	49, 953, 1015, 1095, 1180
AhdI	GACNNNNNGTC	2 cut(s)	247, 857
AhlI	ACTAGT	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	1177
AjuI	GAANNNNNNNTTGG	2 cut(s)	940, 972
AluBI	AGCT	9 cut(s)	16, 123, 136, 276, 394, 649, 662, 711, 1114
AluI	AGCT	9 cut(s)	16, 123, 136, 276, 394, 649, 662, 711, 1114
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	3 cut(s)	429, 844, 882
AlwI	GGATC	3 cut(s)	377, 763, 1133
AoxI	GGCC	3 cut(s)	146, 320, 519
ApaI	GGGCCC	1 cut(s)	523
ApoI	RAATTY	1 cut(s)	1147
Asp700I	GAANNNNTTC	1 cut(s)	929
AspS9I	GGNCC	3 cut(s)	519, 520, 607
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	655
AvaII	GGWCC	1 cut(s)	607
AxyI	CCTNAGG	1 cut(s)	189
BaeGI	GKGCMC	1 cut(s)	523
BanI	GGYRCC	2 cut(s)	9, 1170
BanII	GRGCYC	2 cut(s)	523, 583
BbsI	GAAGAC	2 cut(s)	116, 853
Bbv12I	GWGCWC	1 cut(s)	99
BccI	CCATC	3 cut(s)	261, 746, 1239
BceAI	ACGGC	1 cut(s)	653
BciT130I	CCWGG	1 cut(s)	1179
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	3 cut(s)	429, 844, 882
BcuI	ACTAGT	1 cut(s)	91
BfaI	CTAG	3 cut(s)	92, 467, 650
BfmI	CTRYAG	2 cut(s)	657, 786
BglII	AGATCT	2 cut(s)	534, 1133
BlpI	GCTNAGC	1 cut(s)	663
Bme1390I	CCNGG	2 cut(s)	50, 1179
Bme18I	GGWCC	1 cut(s)	607
BmeRI	GACNNNNNGTC	2 cut(s)	247, 857
BmgT120I	GGNCC	3 cut(s)	519, 520, 607
BmiI	GGNNCC	6 cut(s)	11, 521, 522, 582, 1172, 1185
BmrFI	CCNGG	2 cut(s)	50, 1179
BmrI	ACTGGG	2 cut(s)	688, 1048
BmsI	GCATC	4 cut(s)	547, 569, 714, 846
BmuI	ACTGGG	2 cut(s)	688, 1048
BpiI	GAAGAC	2 cut(s)	116, 853
BplI	GAGNNNNNCTC	2 cut(s)	862, 894
Bpu1102I	GCTNAGC	1 cut(s)	663
BpuEI	CTTGAG	1 cut(s)	480
BpuMI	CCSGG	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	3 cut(s)	76, 374, 1178
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	5 cut(s)	49, 953, 1015, 1095, 1180
Bse1I	ACTGG	5 cut(s)	683, 804, 976, 1054, 1172
Bse21I	CCTNAGG	1 cut(s)	189
Bse3DI	GCAATG	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	1179
BseDI	CCNNGG	3 cut(s)	76, 374, 1178
BseGI	GGATG	4 cut(s)	253, 560, 729, 1085
BseLI	CCNNNNNNNGG	5 cut(s)	49, 953, 1015, 1095, 1180
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	2 cut(s)	180, 837
BseNI	ACTGG	5 cut(s)	683, 804, 976, 1054, 1172
BseRI	GAGGAG	1 cut(s)	563
BseSI	GKGCMC	1 cut(s)	523
BshFI	GGCC	3 cut(s)	148, 322, 521
BshNI	GGYRCC	2 cut(s)	9, 1170
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	50, 170
BslFI	GGGAC	3 cut(s)	94, 235, 254
BslI	CCNNNNNNNGG	5 cut(s)	49, 953, 1015, 1095, 1180
BsmAI	GTCTC	3 cut(s)	429, 844, 882
BsmFI	GGGAC	3 cut(s)	94, 235, 254
BsmI	GAATGC	1 cut(s)	1161
BsnI	GGCC	3 cut(s)	148, 322, 521
Bsp120I	GGGCCC	1 cut(s)	519
Bsp1286I	GDGCHC	3 cut(s)	99, 523, 583
Bsp1407I	TGTACA	1 cut(s)	442
Bsp143I	GATC	5 cut(s)	382, 534, 755, 1133, 1138
Bsp1720I	GCTNAGC	1 cut(s)	663
BspANI	GGCC	3 cut(s)	148, 322, 521
BspCNI	CTCAG	2 cut(s)	181, 838
BspHI	TCATGA	1 cut(s)	867
BspLI	GGNNCC	6 cut(s)	11, 521, 522, 582, 1172, 1185
BspPI	GGATC	3 cut(s)	377, 763, 1133
BspT107I	GGYRCC	2 cut(s)	9, 1170
BsrDI	GCAATG	1 cut(s)	220
BsrGI	TGTACA	1 cut(s)	442
BsrI	ACTGG	5 cut(s)	683, 804, 976, 1054, 1172
BssECI	CCNNGG	3 cut(s)	76, 374, 1178
BssMI	GATC	5 cut(s)	382, 534, 755, 1133, 1138
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	2 cut(s)	76, 374
Bst2UI	CCWGG	1 cut(s)	1179
Bst4CI	ACNGT	2 cut(s)	29, 628
Bst6I	CTCTTC	2 cut(s)	50, 264
BstACI	GRCGYC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	442
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	3 cut(s)	189, 663, 846
BstF5I	GGATG	4 cut(s)	253, 560, 729, 1085
BstKTI	GATC	5 cut(s)	385, 537, 758, 1136, 1141
BstMAI	GTCTC	3 cut(s)	429, 844, 882
BstMBI	GATC	5 cut(s)	382, 534, 755, 1133, 1138
BstMWI	GCNNNNNNNGC	1 cut(s)	646
BstNI	CCWGG	1 cut(s)	1179
BstSCI	CCNGG	2 cut(s)	48, 1177
BstSFI	CTRYAG	2 cut(s)	657, 786
BstSLI	GKGCMC	1 cut(s)	523
BstV2I	GAAGAC	2 cut(s)	116, 853
BstX2I	RGATCY	3 cut(s)	534, 755, 1133
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstYI	RGATCY	3 cut(s)	534, 755, 1133
Bsu36I	CCTNAGG	1 cut(s)	189
BsuRI	GGCC	3 cut(s)	148, 322, 521
BtsCI	GGATG	4 cut(s)	253, 560, 729, 1085
BtsIMutI	CAGTG	2 cut(s)	676, 1165
Cac8I	GCNNGC	1 cut(s)	146
CciI	TCATGA	1 cut(s)	867
Cfr13I	GGNCC	3 cut(s)	519, 520, 607
CseI	GACGC	2 cut(s)	110, 1085
Csp6I	GTAC	4 cut(s)	443, 629, 969, 1066
CviAII	CATG	6 cut(s)	611, 668, 868, 982, 991, 1194
CviQI	GTAC	4 cut(s)	443, 629, 969, 1066
DdeI	CTNAG	3 cut(s)	189, 663, 846
DpnI	GATC	5 cut(s)	384, 536, 757, 1135, 1140
DpnII	GATC	5 cut(s)	382, 534, 755, 1133, 1138
DrdI	GACNNNNNNGTC	1 cut(s)	125
DriI	GACNNNNNGTC	2 cut(s)	247, 857
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	2 cut(s)	50, 264
Eam1105I	GACNNNNNGTC	2 cut(s)	247, 857
EarI	CTCTTC	2 cut(s)	50, 264
Eco130I	CCWWGG	2 cut(s)	76, 374
Eco147I	AGGCCT	1 cut(s)	322
Eco24I	GRGCYC	2 cut(s)	523, 583
Eco32I	GATATC	1 cut(s)	694
Eco47I	GGWCC	1 cut(s)	607
Eco81I	CCTNAGG	1 cut(s)	189
EcoO109I	RGGNCCY	2 cut(s)	519, 520
EcoRII	CCWGG	1 cut(s)	1177
EcoRV	GATATC	1 cut(s)	694
EcoT14I	CCWWGG	2 cut(s)	76, 374
EcoT22I	ATGCAT	1 cut(s)	562
EcoT38I	GRGCYC	2 cut(s)	523, 583
ErhI	CCWWGG	2 cut(s)	76, 374
FaeI	CATG	6 cut(s)	614, 671, 871, 985, 994, 1197
FalI	AAGNNNNNCTT	2 cut(s)	848, 880
FaqI	GGGAC	3 cut(s)	94, 235, 254
FatI	CATG	6 cut(s)	610, 667, 867, 981, 990, 1193
FauNDI	CATATG	1 cut(s)	751
FokI	GGATG	4 cut(s)	240, 547, 736, 1072
FriOI	GRGCYC	2 cut(s)	523, 583
FspBI	CTAG	3 cut(s)	92, 467, 650
HaeIII	GGCC	3 cut(s)	148, 322, 521
HapII	CCGG	2 cut(s)	50, 170
HgaI	GACGC	2 cut(s)	110, 1085
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	6 cut(s)	614, 671, 871, 985, 994, 1197
HincII	GTYRAC	1 cut(s)	158
HindII	GTYRAC	1 cut(s)	158
HinfI	GANTC	9 cut(s)	33, 166, 326, 437, 461, 596, 653, 830, 938
HpaII	CCGG	2 cut(s)	50, 170
HphI	GGTGA	1 cut(s)	655
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	3 cut(s)	607, 1063, 1138
Hpy188III	TCNNGA	6 cut(s)	23, 706, 761, 868, 1117, 1187
Hpy8I	GTNNAC	1 cut(s)	158
Hpy99I	CGWCG	2 cut(s)	33, 104
HpyAV	CCTTC	4 cut(s)	218, 677, 901, 1024
HpyCH4III	ACNGT	2 cut(s)	29, 628
HpyCH4V	TGCA	9 cut(s)	86, 213, 366, 400, 560, 614, 727, 1161, 1214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	646
HpyF3I	CTNAG	3 cut(s)	189, 663, 846
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	6 cut(s)	614, 671, 871, 985, 994, 1197
Kzo9I	GATC	5 cut(s)	382, 534, 755, 1133, 1138
LmnI	GCTCC	1 cut(s)	586
LweI	GCATC	4 cut(s)	547, 569, 714, 846
MaeI	CTAG	3 cut(s)	92, 467, 650
MaeIII	GTNAC	4 cut(s)	298, 781, 804, 1033
MalI	GATC	5 cut(s)	384, 536, 757, 1135, 1140
MboI	GATC	5 cut(s)	382, 534, 755, 1133, 1138
MboII	GAAGA	6 cut(s)	37, 121, 281, 529, 853, 856
MflI	RGATCY	3 cut(s)	534, 755, 1133
MhlI	GDGCHC	3 cut(s)	99, 523, 583
MluCI	AATT	4 cut(s)	340, 489, 948, 1147
MlyI	GAGTC	5 cut(s)	175, 431, 605, 647, 947
MmeI	TCCRAC	3 cut(s)	412, 807, 905
Mph1103I	ATGCAT	1 cut(s)	562
MroXI	GAANNNNTTC	1 cut(s)	929
MseI	TTAA	1 cut(s)	1223
MslI	CAYNNNNRTG	3 cut(s)	872, 889, 995
MspI	CCGG	2 cut(s)	50, 170
MspR9I	CCNGG	2 cut(s)	50, 1179
Mva1269I	GAATGC	1 cut(s)	1161
MvaI	CCWGG	1 cut(s)	1179
MwoI	GCNNNNNNNGC	1 cut(s)	646
NciI	CCSGG	1 cut(s)	50
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	5 cut(s)	382, 534, 755, 1133, 1138
NlaIII	CATG	6 cut(s)	614, 671, 871, 985, 994, 1197
NlaIV	GGNNCC	6 cut(s)	11, 521, 522, 582, 1172, 1185
NmuCI	GTSAC	1 cut(s)	781
NsiI	ATGCAT	1 cut(s)	562
PagI	TCATGA	1 cut(s)	867
PceI	AGGCCT	1 cut(s)	322
PctI	GAATGC	1 cut(s)	1161
PdmI	GAANNNNTTC	1 cut(s)	929
PfeI	GAWTC	4 cut(s)	33, 326, 461, 830
PleI	GAGTC	5 cut(s)	174, 431, 604, 647, 946
PpsI	GAGTC	5 cut(s)	174, 431, 604, 647, 946
Psp6I	CCWGG	1 cut(s)	1177
PspGI	CCWGG	1 cut(s)	1177
PspN4I	GGNNCC	6 cut(s)	11, 521, 522, 582, 1172, 1185
PspOMI	GGGCCC	1 cut(s)	519
PspPI	GGNCC	3 cut(s)	519, 520, 607
PsuI	RGATCY	3 cut(s)	534, 755, 1133
RsaI	GTAC	4 cut(s)	444, 630, 970, 1067
RsaNI	GTAC	4 cut(s)	443, 629, 969, 1066
RseI	CAYNNNNRTG	3 cut(s)	872, 889, 995
SaqAI	TTAA	1 cut(s)	1223
Sau3AI	GATC	5 cut(s)	382, 534, 755, 1133, 1138
Sau96I	GGNCC	3 cut(s)	519, 520, 607
SchI	GAGTC	5 cut(s)	175, 431, 605, 647, 947
ScrFI	CCNGG	2 cut(s)	50, 1179
SduI	GDGCHC	3 cut(s)	99, 523, 583
SfaNI	GCATC	4 cut(s)	547, 569, 714, 846
SfcI	CTRYAG	2 cut(s)	657, 786
SinI	GGWCC	1 cut(s)	607
SmiMI	CAYNNNNRTG	3 cut(s)	872, 889, 995
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
SpeI	ACTAGT	1 cut(s)	91
Sse9I	AATT	4 cut(s)	340, 489, 948, 1147
SseBI	AGGCCT	1 cut(s)	322
SspI	AATATT	1 cut(s)	1048
SspMI	CTAG	3 cut(s)	92, 467, 650
StuI	AGGCCT	1 cut(s)	322
StyD4I	CCNGG	2 cut(s)	48, 1177
StyI	CCWWGG	2 cut(s)	76, 374
TaaI	ACNGT	2 cut(s)	29, 628
TaqI	TCGA	4 cut(s)	31, 99, 599, 705
TasI	AATT	4 cut(s)	340, 489, 948, 1147
TatI	WGTACW	2 cut(s)	442, 628
TfiI	GAWTC	4 cut(s)	33, 326, 461, 830
Tru1I	TTAA	1 cut(s)	1223
Tru9I	TTAA	1 cut(s)	1223
TscAI	CASTG	2 cut(s)	683, 1172
TseFI	GTSAC	1 cut(s)	781
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	3 cut(s)	219, 856, 948
TspRI	CASTG	2 cut(s)	683, 1172
VpaK11BI	GGWCC	1 cut(s)	607
XapI	RAATTY	1 cut(s)	1147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	888
XmnI	GAANNNNTTC	1 cut(s)	929
XspI	CTAG	3 cut(s)	92, 467, 650
Zsp2I	ATGCAT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.