Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006156

Physical Location & Seq

Genomic Coordinates Forward (+)

28324870 .. 28328794

Gene Structure 3925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG298600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCTCATGTGCCTCACATTATTTTTCTGGAGCATCACCTTCTACAAGGCCATTAGATTGGTAGATTGGAGCTCAACTGTAGCTCGTACCAGCGTAAGTGGCATTCGTTTTGAATTCAGGTTTGATCCATTGAAGCTACTGCAGATTTTGAGGGGCAAAAGACTGATGTTTGTTGGAGACTCGGTACAGAGAGGCCAGTTTGAATCCACGGTCTGTATGGTACAATCTATACTTCCTCAAGGAAAGAAATCCTTCCAAAGGGTTCCACCTAGGAAGATATTCACAATCAAGGAGTTCGATGCCTCCTGGGCTCCCTTTATTGTGGAGTCAATTTCGGATCATGCAACGAAGCATACTGTACTAAAACGGTTGGTGAAGCTCGACTCCATAGCTAAGCATGGCAAGCACTGGGAAGGAGTAGATATTTTGGTGTTTGAGAGCTATGTATGGTGGATGCACAAGCCTACAATCAATGCTACATATGGATCTCCTAACGATGTTCAAGAATATAATGTCACTACTGCGTATAAATTGGCATTACAGACTTGGGCAGAATGGTTAGAATCAAGAATAAACCCAGAGAGGCAAAAGGTCTTCTTCATGAGTATGTCTCCAACACATCTATGGAGCTGGGAATGGAGGCCTGGCAGTGATGAAAACTGCTACAATGAGTCCCATCCAATTCAAGGTTCATATTGGGGTACTGGTTCGAACACCAAAATCATGGATATTATAGATGACATGTTACAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

251

Amino Acids

29.36

Weight (kDa)

8.68

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	40 - 249	3.9e-49	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73140
fragaria_vesca	FvH4_3g18650 FvH4_3g18650
malus_domestica	MD03G1240300.v1.1
prunus_persica	Prupe.4G170300_v2.0.a1 Prupe.4G170300_v2.0.a1
pyrus_communis	pycom03g18550
rosa_chinensis	RchiOBHm_Chr5g0031471 RchiOBHm_Chr7g0217351
rosa_laevigata	RLG00000033269 RLG00000033270 RLG00000033310
rosa_multiflora	Rmu_sc0000404.1_g000003 Rmu_sc0011824.1_g000011 Rmu_sc0038917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048860 Rroxscaffold_3G00242310
rosa_rugosa	Rorug05G0126000 Rorug05G0126100 Rorug07G0168300
rosa_samantha	Rh5AG218900 Rh5BG218200 Rh5CG241900 Rh5DG223500 Rh7BG298600
rosa_wichuraiana	Rw5G019970 Rw7G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	119, 345, 493
AcsI	RAATTY	1 cut(s)	113
AfaI	GTAC	5 cut(s)	88, 186, 222, 360, 703
AfiI	CCNNNNNNNGG	2 cut(s)	258, 686
AflIII	ACRYGT	1 cut(s)	741
AgsI	TTSAA	5 cut(s)	113, 133, 203, 503, 686
AjnI	CCWGG	2 cut(s)	305, 643
AjuI	GAANNNNNNNTTGG	2 cut(s)	673, 705
AluBI	AGCT	7 cut(s)	72, 83, 136, 379, 392, 441, 630
AluI	AGCT	7 cut(s)	72, 83, 136, 379, 392, 441, 630
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	2 cut(s)	171, 615
AlwI	GGATC	3 cut(s)	119, 345, 493
AoxI	GGCC	3 cut(s)	48, 193, 641
ApoI	RAATTY	1 cut(s)	113
Asp700I	GAANNNNTTC	2 cut(s)	251, 278
AspA2I	CCTAGG	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	28, 385
AsuII	TTCGAA	1 cut(s)	710
AvrII	CCTAGG	1 cut(s)	269
BanII	GRGCYC	2 cut(s)	74, 313
BbsI	GAAGAC	1 cut(s)	586
Bbv12I	GWGCWC	1 cut(s)	74
BccI	CCATC	1 cut(s)	684
BciT130I	CCWGG	2 cut(s)	307, 645
BcoDI	GTCTC	2 cut(s)	171, 615
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	2 cut(s)	78, 140
BglI	GCCNNNNNGGC	1 cut(s)	308
BlnI	CCTAGG	1 cut(s)	269
BlpI	GCTNAGC	1 cut(s)	393
Bme1390I	CCNGG	2 cut(s)	307, 645
BmiI	GGNNCC	2 cut(s)	264, 312
BmrFI	CCNGG	2 cut(s)	307, 645
BmrI	ACTGGG	1 cut(s)	418
BmsI	GCATC	3 cut(s)	42, 289, 444
BmuI	ACTGGG	1 cut(s)	418
BpiI	GAAGAC	1 cut(s)	586
BplI	GAGNNNNNCTC	2 cut(s)	595, 627
BpmI	CTGGAG	1 cut(s)	49
Bpu1102I	GCTNAGC	1 cut(s)	393
Bpu14I	TTCGAA	1 cut(s)	710
BpuEI	CTTGAG	1 cut(s)	222
BsaJI	CCNNGG	3 cut(s)	207, 269, 306
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	2 cut(s)	258, 686
Bse1I	ACTGG	3 cut(s)	196, 413, 709
BseBI	CCWGG	2 cut(s)	307, 645
BseDI	CCNNGG	3 cut(s)	207, 269, 306
BseGI	GGATG	2 cut(s)	459, 676
BseLI	CCNNNNNNNGG	2 cut(s)	258, 686
BseNI	ACTGG	3 cut(s)	196, 413, 709
BseYI	CCCAGC	1 cut(s)	630
BshFI	GGCC	3 cut(s)	50, 195, 643
BsiHKAI	GWGCWC	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	658
BslI	CCNNNNNNNGG	2 cut(s)	258, 686
BsmAI	GTCTC	2 cut(s)	171, 615
BsmFI	GGGAC	1 cut(s)	658
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	3 cut(s)	50, 195, 643
Bsp119I	TTCGAA	1 cut(s)	710
Bsp1286I	GDGCHC	2 cut(s)	74, 313
Bsp143I	GATC	3 cut(s)	124, 337, 485
Bsp1720I	GCTNAGC	1 cut(s)	393
BspANI	GGCC	3 cut(s)	50, 195, 643
BspHI	TCATGA	1 cut(s)	600
BspLI	GGNNCC	2 cut(s)	264, 312
BspMAI	CTGCAG	1 cut(s)	144
BspPI	GGATC	3 cut(s)	119, 345, 493
BspT104I	TTCGAA	1 cut(s)	710
BsrI	ACTGG	3 cut(s)	196, 413, 709
BssECI	CCNNGG	3 cut(s)	207, 269, 306
BssMI	GATC	3 cut(s)	124, 337, 485
BssT1I	CCWWGG	1 cut(s)	269
Bst2UI	CCWGG	2 cut(s)	307, 645
Bst4CI	ACNGT	4 cut(s)	79, 211, 358, 369
BstBI	TTCGAA	1 cut(s)	710
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	1 cut(s)	393
BstDSI	CCRYGG	1 cut(s)	207
BstENI	CCTNNNNNAGG	1 cut(s)	256
BstF5I	GGATG	2 cut(s)	459, 676
BstKTI	GATC	3 cut(s)	127, 340, 488
BstMAI	GTCTC	2 cut(s)	171, 615
BstMBI	GATC	3 cut(s)	124, 337, 485
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 308, 403
BstNI	CCWGG	2 cut(s)	307, 645
BstNSI	RCATGY	1 cut(s)	745
BstSCI	CCNGG	2 cut(s)	305, 643
BstSFI	CTRYAG	2 cut(s)	78, 140
BstV2I	GAAGAC	1 cut(s)	586
BstX2I	RGATCY	1 cut(s)	485
BstXI	CCANNNNNNTGG	2 cut(s)	58, 724
BstYI	RGATCY	1 cut(s)	485
BsuRI	GGCC	3 cut(s)	50, 195, 643
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	459, 676
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	2 cut(s)	406, 655
Cac8I	GCNNGC	1 cut(s)	404
CciI	TCATGA	1 cut(s)	600
Csp6I	GTAC	5 cut(s)	87, 185, 221, 359, 702
CviAII	CATG	6 cut(s)	7, 341, 398, 601, 724, 742
CviQI	GTAC	5 cut(s)	87, 185, 221, 359, 702
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	3 cut(s)	126, 339, 487
DpnII	GATC	3 cut(s)	124, 337, 485
Ecl136II	GAGCTC	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	269
Eco147I	AGGCCT	1 cut(s)	643
Eco24I	GRGCYC	2 cut(s)	74, 313
Eco53kI	GAGCTC	1 cut(s)	72
EcoICRI	GAGCTC	1 cut(s)	72
EcoNI	CCTNNNNNAGG	1 cut(s)	256
EcoRI	GAATTC	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	305, 643
EcoT14I	CCWWGG	1 cut(s)	269
EcoT38I	GRGCYC	2 cut(s)	74, 313
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	6 cut(s)	10, 344, 401, 604, 727, 745
FalI	AAGNNNNNCTT	4 cut(s)	236, 268, 581, 613
FaqI	GGGAC	1 cut(s)	658
FatI	CATG	6 cut(s)	6, 340, 397, 600, 723, 741
FauNDI	CATATG	1 cut(s)	481
FokI	GGATG	2 cut(s)	466, 663
FriOI	GRGCYC	2 cut(s)	74, 313
FspBI	CTAG	1 cut(s)	270
GsaI	CCCAGC	1 cut(s)	634
GsuI	CTGGAG	1 cut(s)	49
HaeIII	GGCC	3 cut(s)	50, 195, 643
Hin1II	CATG	6 cut(s)	10, 344, 401, 604, 727, 745
HinfI	GANTC	6 cut(s)	179, 203, 326, 383, 563, 671
HphI	GGTGA	2 cut(s)	28, 385
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	4 cut(s)	28, 503, 567, 601
HpyAV	CCTTC	3 cut(s)	49, 262, 407
HpyCH4III	ACNGT	4 cut(s)	79, 211, 358, 369
HpyCH4V	TGCA	3 cut(s)	142, 344, 457
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 308, 403
HpyF3I	CTNAG	1 cut(s)	393
Hsp92II	CATG	6 cut(s)	10, 344, 401, 604, 727, 745
Kzo9I	GATC	3 cut(s)	124, 337, 485
LmnI	GCTCC	4 cut(s)	30, 69, 316, 627
LweI	GCATC	3 cut(s)	42, 289, 444
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	514, 744
MalI	GATC	3 cut(s)	126, 339, 487
MboI	GATC	3 cut(s)	124, 337, 485
MboII	GAAGA	3 cut(s)	286, 586, 589
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	2 cut(s)	74, 313
MluCI	AATT	4 cut(s)	113, 330, 530, 681
MlyI	GAGTC	4 cut(s)	173, 335, 377, 680
MmeI	TCCRAC	2 cut(s)	154, 638
MnlI	CCTC	7 cut(s)	23, 144, 185, 246, 313, 576, 633
MroXI	GAANNNNTTC	2 cut(s)	251, 278
MslI	CAYNNNNRTG	2 cut(s)	605, 622
MspR9I	CCNGG	2 cut(s)	307, 645
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	2 cut(s)	307, 645
MwoI	GCNNNNNNNGC	3 cut(s)	99, 308, 403
NdeI	CATATG	1 cut(s)	481
NdeII	GATC	3 cut(s)	124, 337, 485
NlaIII	CATG	6 cut(s)	10, 344, 401, 604, 727, 745
NlaIV	GGNNCC	2 cut(s)	264, 312
NmuCI	GTSAC	1 cut(s)	514
NspI	RCATGY	1 cut(s)	745
NspV	TTCGAA	1 cut(s)	710
PagI	TCATGA	1 cut(s)	600
PceI	AGGCCT	1 cut(s)	643
PciI	ACATGT	1 cut(s)	741
PctI	GAATGC	1 cut(s)	102
PdmI	GAANNNNTTC	2 cut(s)	251, 278
PfeI	GAWTC	2 cut(s)	203, 563
PleI	GAGTC	4 cut(s)	173, 334, 377, 679
PpsI	GAGTC	4 cut(s)	173, 334, 377, 679
PscI	ACATGT	1 cut(s)	741
Psp124BI	GAGCTC	1 cut(s)	74
Psp6I	CCWGG	2 cut(s)	305, 643
PspFI	CCCAGC	1 cut(s)	630
PspGI	CCWGG	2 cut(s)	305, 643
PspN4I	GGNNCC	2 cut(s)	264, 312
PstI	CTGCAG	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	485
RsaI	GTAC	5 cut(s)	88, 186, 222, 360, 703
RsaNI	GTAC	5 cut(s)	87, 185, 221, 359, 702
RseI	CAYNNNNRTG	2 cut(s)	605, 622
SacI	GAGCTC	1 cut(s)	74
Sau3AI	GATC	3 cut(s)	124, 337, 485
SchI	GAGTC	4 cut(s)	173, 335, 377, 680
ScrFI	CCNGG	2 cut(s)	307, 645
SduI	GDGCHC	2 cut(s)	74, 313
SfaNI	GCATC	3 cut(s)	42, 289, 444
SfcI	CTRYAG	2 cut(s)	78, 140
SfuI	TTCGAA	1 cut(s)	710
SmiMI	CAYNNNNRTG	2 cut(s)	605, 622
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
Sse9I	AATT	4 cut(s)	113, 330, 530, 681
SseBI	AGGCCT	1 cut(s)	643
SspMI	CTAG	1 cut(s)	270
SstI	GAGCTC	1 cut(s)	74
StuI	AGGCCT	1 cut(s)	643
StyD4I	CCNGG	2 cut(s)	305, 643
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	4 cut(s)	79, 211, 358, 369
TaqI	TCGA	3 cut(s)	297, 381, 710
TasI	AATT	4 cut(s)	113, 330, 530, 681
TatI	WGTACW	1 cut(s)	358
TfiI	GAWTC	2 cut(s)	203, 563
TscAI	CASTG	2 cut(s)	413, 655
TseFI	GTSAC	1 cut(s)	514
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	3 cut(s)	589, 669, 681
TspRI	CASTG	2 cut(s)	413, 655
XagI	CCTNNNNNAGG	1 cut(s)	256
XapI	RAATTY	1 cut(s)	113
XceI	RCATGY	1 cut(s)	745
XcmI	CCANNNNNNNNNTGG	2 cut(s)	214, 621
XmaJI	CCTAGG	1 cut(s)	269
XmnI	GAANNNNTTC	2 cut(s)	251, 278
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.