Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006156

Physical Location & Seq

Genomic Coordinates Forward (+)

35228656 .. 35229804

Gene Structure 1149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19451

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTGCCTCACATTATTTTTCTGGAGCATCACCTTCTACAAGGCCATCAGATTGGTAGATTGGAGCTCAGTTGTAGCTCGTACCAGCGTAAGTGGCATTCGTTTTGAATTCAAGTTTGATCCATTGAAACTACTGCAAATTTTGAGGGGCAAAAGACTGATGTTTGTTGGAGATTCGGTACAGAGAGGCCAGTTTGAATCCATGGTCTGTATGTTCGATGCCTCCATTGAGTACTACTGGGCTCCCTTTATTGTGGAGTCAATTTCGGATCATGCAACGAAGCATACTGTGCTAAAACGGTTGGTGAAGCTCGACTCCATAGCTAAGCATGGCAAGCACTGGGAAGGAGTAGATATTTTGGTGTTTGAGAGCTATGTATGGTGGATGCACAAGCCTACAATCAATGCTACATATGGATCTCCAAACGATGTCCAAGAATATAATGTCACTACTGCGTATAAATTGGCATTACAGACTTGGGCAGAATGGTTAGAATCAAGAATAAACCCAGAAAGGCAAAAGGTCTTCTTCATGATTATGTCTCCAACACTTCTATGTGATGAAAACTGCTACAATGTGTCGCATCCAATTCAAGGTTCATACTGGGGTACTGGTTCGAGCACCAAAATCATGGATATTATAGATGACACGTTACAGGATTTTAAAGTTAAGGTTACATTTTTGAATATCACACAATTGTCTGAGTACAGAAAAGATGCACATCAGTTTATGGGGAACGCGAGGGCAAGCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

251

Amino Acids

29.19

Weight (kDa)

7.69

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	38 - 74	2.9e-12	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
PC-Esterase	PF13839	73 - 242	1.3e-35	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73140
fragaria_vesca	FvH4_3g18650 FvH4_3g18650
malus_domestica	MD03G1240300.v1.1
prunus_persica	Prupe.4G170300_v2.0.a1 Prupe.4G170300_v2.0.a1
pyrus_communis	pycom03g18550
rosa_chinensis	RchiOBHm_Chr5g0031471 RchiOBHm_Chr7g0217351
rosa_laevigata	RLG00000033269 RLG00000033270 RLG00000033310
rosa_multiflora	Rmu_sc0000404.1_g000003 Rmu_sc0011824.1_g000011 Rmu_sc0038917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048860 Rroxscaffold_3G00242310
rosa_rugosa	Rorug05G0126000 Rorug05G0126100 Rorug07G0168300
rosa_samantha	Rh5AG218900 Rh5BG218200 Rh5CG241900 Rh5DG223500 Rh7BG298600
rosa_wichuraiana	Rw5G019970 Rw7G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	740
AclWI	GGATC	3 cut(s)	113, 276, 424
AcsI	RAATTY	2 cut(s)	107, 138
AfaI	GTAC	5 cut(s)	82, 180, 233, 610, 707
AfiI	CCNNNNNNNGG	1 cut(s)	593
AflIII	ACRYGT	1 cut(s)	648
AgsI	TTSAA	6 cut(s)	107, 112, 127, 197, 593, 685
AjuI	GAANNNNNNNTTGG	2 cut(s)	580, 612
AluBI	AGCT	6 cut(s)	66, 77, 310, 323, 372, 750
AluI	AGCT	6 cut(s)	66, 77, 310, 323, 372, 750
Alw21I	GWGCWC	2 cut(s)	68, 623
Alw26I	GTCTC	1 cut(s)	546
AlwI	GGATC	3 cut(s)	113, 276, 424
AoxI	GGCC	2 cut(s)	42, 187
ApoI	RAATTY	2 cut(s)	107, 138
AsuHPI	GGTGA	2 cut(s)	22, 316
BanII	GRGCYC	2 cut(s)	68, 244
BbsI	GAAGAC	1 cut(s)	517
Bbv12I	GWGCWC	2 cut(s)	68, 623
BccI	CCATC	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	546
BlpI	GCTNAGC	1 cut(s)	324
BmcAI	AGTACT	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	243
BmrI	ACTGGG	3 cut(s)	247, 349, 613
BmsI	GCATC	5 cut(s)	36, 208, 375, 592, 706
BmuI	ACTGGG	3 cut(s)	247, 349, 613
BpiI	GAAGAC	1 cut(s)	517
BpmI	CTGGAG	1 cut(s)	43
Bpu1102I	GCTNAGC	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	720
BsaJI	CCNNGG	1 cut(s)	201
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	593
Bse1I	ACTGG	5 cut(s)	190, 242, 344, 608, 616
Bse8I	GATNNNNATC	1 cut(s)	720
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	2 cut(s)	390, 583
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	1 cut(s)	593
BseMII	CTCAG	2 cut(s)	81, 693
BseNI	ACTGG	5 cut(s)	190, 242, 344, 608, 616
Bsh1236I	CGCG	1 cut(s)	740
BshFI	GGCC	2 cut(s)	44, 189
BsiHKAI	GWGCWC	2 cut(s)	68, 623
BslI	CCNNNNNNNGG	1 cut(s)	593
BsmAI	GTCTC	1 cut(s)	546
BsmI	GAATGC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	44, 189
Bsp1286I	GDGCHC	3 cut(s)	68, 244, 623
Bsp143I	GATC	3 cut(s)	118, 268, 416
Bsp1720I	GCTNAGC	1 cut(s)	324
Bsp19I	CCATGG	1 cut(s)	201
BspANI	GGCC	2 cut(s)	44, 189
BspCNI	CTCAG	2 cut(s)	80, 694
BspFNI	CGCG	1 cut(s)	740
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	3 cut(s)	113, 276, 424
BsrI	ACTGG	5 cut(s)	190, 242, 344, 608, 616
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	3 cut(s)	118, 268, 416
BssT1I	CCWWGG	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	289, 300
BstAPI	GCANNNNNTGC	1 cut(s)	289
BstC8I	GCNNGC	2 cut(s)	335, 748
BstDEI	CTNAG	3 cut(s)	67, 324, 702
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	390, 583
BstFNI	CGCG	1 cut(s)	740
BstKTI	GATC	3 cut(s)	121, 271, 419
BstMAI	GTCTC	1 cut(s)	546
BstMBI	GATC	3 cut(s)	118, 268, 416
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 289, 334
BstUI	CGCG	1 cut(s)	740
BstV2I	GAAGAC	1 cut(s)	517
BstX2I	RGATCY	1 cut(s)	416
BstXI	CCANNNNNNTGG	2 cut(s)	52, 631
BstYI	RGATCY	1 cut(s)	416
BsuRI	GGCC	2 cut(s)	44, 189
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	390, 583
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	335, 748
CciI	TCATGA	1 cut(s)	531
Csp6I	GTAC	5 cut(s)	81, 179, 232, 609, 706
CviAII	CATG	5 cut(s)	202, 272, 329, 532, 631
CviQI	GTAC	5 cut(s)	81, 179, 232, 609, 706
DdeI	CTNAG	3 cut(s)	67, 324, 702
DpnI	GATC	3 cut(s)	120, 270, 418
DpnII	GATC	3 cut(s)	118, 268, 416
DraI	TTTAAA	1 cut(s)	664
Ecl136II	GAGCTC	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	2 cut(s)	68, 244
Eco53kI	GAGCTC	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	2 cut(s)	68, 244
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	5 cut(s)	205, 275, 332, 535, 634
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FatI	CATG	5 cut(s)	201, 271, 328, 531, 630
FauNDI	CATATG	1 cut(s)	412
FokI	GGATG	2 cut(s)	397, 570
FriOI	GRGCYC	2 cut(s)	68, 244
GsuI	CTGGAG	1 cut(s)	43
HaeIII	GGCC	2 cut(s)	44, 189
Hin1II	CATG	5 cut(s)	205, 275, 332, 535, 634
HinfI	GANTC	5 cut(s)	173, 197, 257, 314, 494
HphI	GGTGA	2 cut(s)	22, 316
Hpy188I	TCNGA	3 cut(s)	50, 268, 703
Hpy188III	TCNNGA	4 cut(s)	22, 498, 532, 753
HpyAV	CCTTC	2 cut(s)	43, 338
HpyCH4III	ACNGT	2 cut(s)	289, 300
HpyCH4IV	ACGT	1 cut(s)	650
HpyCH4V	TGCA	4 cut(s)	136, 275, 388, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 289, 334
HpyF3I	CTNAG	3 cut(s)	67, 324, 702
HpySE526I	ACGT	1 cut(s)	650
Hsp92II	CATG	5 cut(s)	205, 275, 332, 535, 634
Kzo9I	GATC	3 cut(s)	118, 268, 416
LmnI	GCTCC	4 cut(s)	24, 63, 247, 755
LpnPI	CCDG	9 cut(s)	7, 97, 203, 223, 325, 522, 589, 597, 641
LweI	GCATC	5 cut(s)	36, 208, 375, 592, 706
MaeII	ACGT	1 cut(s)	650
MaeIII	GTNAC	3 cut(s)	445, 651, 673
MalI	GATC	3 cut(s)	120, 270, 418
MboI	GATC	3 cut(s)	118, 268, 416
MboII	GAAGA	2 cut(s)	517, 520
MfeI	CAATTG	1 cut(s)	695
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	3 cut(s)	68, 244, 623
MluCI	AATT	6 cut(s)	107, 138, 261, 461, 588, 695
MlyI	GAGTC	2 cut(s)	266, 308
MmeI	TCCRAC	2 cut(s)	148, 569
MnlI	CCTC	5 cut(s)	17, 138, 179, 232, 735
MseI	TTAA	2 cut(s)	663, 669
MslI	CAYNNNNRTG	2 cut(s)	536, 553
MunI	CAATTG	1 cut(s)	695
Mva1269I	GAATGC	1 cut(s)	96
MvnI	CGCG	1 cut(s)	740
MwoI	GCNNNNNNNGC	3 cut(s)	93, 289, 334
NcoI	CCATGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	3 cut(s)	118, 268, 416
NlaIII	CATG	5 cut(s)	205, 275, 332, 535, 634
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	445
PagI	TCATGA	1 cut(s)	531
PctI	GAATGC	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	173, 197, 494
PleI	GAGTC	2 cut(s)	265, 308
PpsI	GAGTC	2 cut(s)	265, 308
Psp124BI	GAGCTC	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	416
RsaI	GTAC	5 cut(s)	82, 180, 233, 610, 707
RsaNI	GTAC	5 cut(s)	81, 179, 232, 609, 706
RseI	CAYNNNNRTG	2 cut(s)	536, 553
SacI	GAGCTC	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	663, 669
Sau3AI	GATC	3 cut(s)	118, 268, 416
ScaI	AGTACT	1 cut(s)	233
SchI	GAGTC	2 cut(s)	266, 308
SduI	GDGCHC	3 cut(s)	68, 244, 623
SfaNI	GCATC	5 cut(s)	36, 208, 375, 592, 706
SmiMI	CAYNNNNRTG	2 cut(s)	536, 553
Sse9I	AATT	6 cut(s)	107, 138, 261, 461, 588, 695
SstI	GAGCTC	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	289, 300
TaiI	ACGT	1 cut(s)	653
TaqI	TCGA	3 cut(s)	216, 312, 617
TasI	AATT	6 cut(s)	107, 138, 261, 461, 588, 695
TatI	WGTACW	2 cut(s)	231, 705
TfiI	GAWTC	3 cut(s)	173, 197, 494
Tru1I	TTAA	2 cut(s)	663, 669
Tru9I	TTAA	2 cut(s)	663, 669
TscAI	CASTG	1 cut(s)	344
TseFI	GTSAC	1 cut(s)	445
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	3 cut(s)	520, 576, 588
TspRI	CASTG	1 cut(s)	344
XapI	RAATTY	2 cut(s)	107, 138
ZrmI	AGTACT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.