Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006156

Physical Location & Seq

Genomic Coordinates Reverse (-)

25106136 .. 25108010

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG223500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGACAAAGCAGGTCTCTCTTGATCGTCGCATCCAATCGCTCCTCCCTGTTGCATTGGCTTCTCTGCTTGTCCTTGGGACCACCCGACTATTCCTGGACACGTTGAAGAGCAACCACAGTTTTGTGTTTCAGCTATATGGCAGGTCAAGAGGTCAAGGAGAGAGACCAGCAGTGATTGTTTCCCCCGAGGACTGCATTGATGAAAGTTGTAATGTTTTTGAAGGAAAATGGGTATGGGATAACGAGTCATATGCTCCTCACTATACAGAAGAGAGCTGCCCCTACTTGGTGAAACAGGTTACATGTCAAAAGAATGGTAGGCCTGATTCTTACTACAAGAATTGGAGATGGCAACCCAATGACTGCAGCCTCCCAAGATATGGATCTCCAAACGATGTCCAAGAATATAATGTCACTACTGCATATAAATTGGCATTACAGACTTGGGCAGAATGGTTAGAATCAAGTATAAACCCAGAAAGGCAAAAGGTCTTCTTCATGAGTATGTCTCCAACACATCTATGGAGCTGGGAATGGAGGCCTGGCAGTGATGAAAACTGCTACAATGAGTCCTATCCAATTCAAGGTTCATATTGGGGTACTGGTTCGAACACCAAAATCATGGATATTATAGATGATACGTTGCAGGATTTGAAAGTTAAGGTTACATTTTTGAACATCACACAATTGTCTGAGTACAGAAAAGATGCACACACATCAGTTTATGGGGAACGCAAGGGCAAGCTCCTGACGAAGGAACAAAGATCTGATCCAAAAAACTTTGCCGATTGCATTCACTGGTGCTTACCTGGAGTTCCAGATACATGGAACGAAATTTTGTACGCACATTTGTTAAAGAGTCACCAAAATTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

292

Amino Acids

33.97

Weight (kDa)

6.0

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	68 - 123	2.7e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	129 - 282	3.3e-46	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73140
fragaria_vesca	FvH4_3g18650 FvH4_3g18650
malus_domestica	MD03G1240300.v1.1
prunus_persica	Prupe.4G170300_v2.0.a1 Prupe.4G170300_v2.0.a1
pyrus_communis	pycom03g18550
rosa_chinensis	RchiOBHm_Chr5g0031471 RchiOBHm_Chr7g0217351
rosa_laevigata	RLG00000033269 RLG00000033270 RLG00000033310
rosa_multiflora	Rmu_sc0000404.1_g000003 Rmu_sc0011824.1_g000011 Rmu_sc0038917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048860 Rroxscaffold_3G00242310
rosa_rugosa	Rorug05G0126000 Rorug05G0126100 Rorug07G0168300
rosa_samantha	Rh5AG218900 Rh5BG218200 Rh5CG241900 Rh5DG223500 Rh7BG298600
rosa_wichuraiana	Rw5G019970 Rw7G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	132
AccB7I	CCANNNNNTGG	1 cut(s)	380
AclWI	GGATC	2 cut(s)	391, 764
AcsI	RAATTY	2 cut(s)	834, 868
AfaI	GTAC	3 cut(s)	601, 698, 842
AfiI	CCNNNNNNNGG	4 cut(s)	286, 380, 584, 754
AflIII	ACRYGT	2 cut(s)	99, 302
AgsI	TTSAA	5 cut(s)	106, 221, 584, 655, 676
AjnI	CCWGG	3 cut(s)	93, 541, 808
AjuI	GAANNNNNNNTTGG	2 cut(s)	571, 603
AluBI	AGCT	4 cut(s)	133, 276, 528, 745
AluI	AGCT	4 cut(s)	133, 276, 528, 745
Alw26I	GTCTC	3 cut(s)	19, 157, 513
AlwI	GGATC	2 cut(s)	391, 764
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	320, 539
ApeKI	GCWGC	2 cut(s)	276, 366
ApoI	RAATTY	2 cut(s)	834, 868
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	2 cut(s)	301, 854
AsuII	TTCGAA	1 cut(s)	608
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	484
BbvI	GCAGC	2 cut(s)	263, 378
BccI	CCATC	1 cut(s)	342
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	3 cut(s)	95, 543, 810
BcoDI	GTCTC	3 cut(s)	19, 157, 513
BfmI	CTRYAG	1 cut(s)	364
BfuAI	ACCTGC	1 cut(s)	132
BglII	AGATCT	1 cut(s)	764
BisI	GCNGC	2 cut(s)	277, 367
BlsI	GCNGC	2 cut(s)	278, 368
Bme1390I	CCNGG	3 cut(s)	95, 543, 810
Bme18I	GGWCC	1 cut(s)	78
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	3 cut(s)	95, 543, 810
BmsI	GCATC	2 cut(s)	39, 697
BpiI	GAAGAC	1 cut(s)	484
BplI	GAGNNNNNCTC	2 cut(s)	493, 525
BpmI	CTGGAG	1 cut(s)	831
Bpu14I	TTCGAA	1 cut(s)	608
BsaBI	GATNNNNATC	1 cut(s)	382
BsaI	GGTCTC	2 cut(s)	19, 157
BsaJI	CCNNGG	2 cut(s)	73, 186
Bsc4I	CCNNNNNNNGG	4 cut(s)	286, 380, 584, 754
Bse1I	ACTGG	2 cut(s)	607, 803
Bse8I	GATNNNNATC	1 cut(s)	382
BseBI	CCWGG	3 cut(s)	95, 543, 810
BseDI	CCNNGG	2 cut(s)	73, 186
BseGI	GGATG	1 cut(s)	30
BseJI	GATNNNNATC	1 cut(s)	382
BseLI	CCNNNNNNNGG	4 cut(s)	286, 380, 584, 754
BseMII	CTCAG	1 cut(s)	684
BseNI	ACTGG	2 cut(s)	607, 803
BseRI	GAGGAG	2 cut(s)	32, 246
BseXI	GCAGC	2 cut(s)	263, 378
BseYI	CCCAGC	1 cut(s)	528
BshFI	GGCC	2 cut(s)	322, 541
BsiHKCI	CYCGRG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	4 cut(s)	286, 380, 584, 754
BsmAI	GTCTC	3 cut(s)	19, 157, 513
BsmFI	GGGAC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	792
BsnI	GGCC	2 cut(s)	322, 541
Bso31I	GGTCTC	2 cut(s)	19, 157
BsoBI	CYCGRG	1 cut(s)	185
Bsp119I	TTCGAA	1 cut(s)	608
Bsp143I	GATC	4 cut(s)	22, 383, 764, 769
BspANI	GGCC	2 cut(s)	322, 541
BspCNI	CTCAG	1 cut(s)	685
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	1 cut(s)	79
BspMAI	CTGCAG	1 cut(s)	368
BspMI	ACCTGC	1 cut(s)	132
BspPI	GGATC	2 cut(s)	391, 764
BspQI	GCTCTTC	1 cut(s)	101
BspT104I	TTCGAA	1 cut(s)	608
BspTNI	GGTCTC	2 cut(s)	19, 157
BsrI	ACTGG	2 cut(s)	607, 803
BssECI	CCNNGG	2 cut(s)	73, 186
BssMI	GATC	4 cut(s)	22, 383, 764, 769
BssT1I	CCWWGG	1 cut(s)	73
Bst2UI	CCWGG	3 cut(s)	95, 543, 810
Bst4CI	ACNGT	1 cut(s)	119
Bst6I	CTCTTC	2 cut(s)	101, 264
BstBI	TTCGAA	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	743
BstDEI	CTNAG	1 cut(s)	693
BstENI	CCTNNNNNAGG	1 cut(s)	752
BstF5I	GGATG	1 cut(s)	30
BstKTI	GATC	4 cut(s)	25, 386, 767, 772
BstMAI	GTCTC	3 cut(s)	19, 157, 513
BstMBI	GATC	4 cut(s)	22, 383, 764, 769
BstNI	CCWGG	3 cut(s)	95, 543, 810
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	3 cut(s)	93, 541, 808
BstSFI	CTRYAG	1 cut(s)	364
BstV1I	GCAGC	2 cut(s)	263, 378
BstV2I	GAAGAC	1 cut(s)	484
BstX2I	RGATCY	2 cut(s)	383, 764
BstXI	CCANNNNNNTGG	2 cut(s)	622, 825
BstYI	RGATCY	2 cut(s)	383, 764
BsuRI	GGCC	2 cut(s)	322, 541
BtsCI	GGATG	1 cut(s)	30
BtsI	GCAGTG	2 cut(s)	177, 553
BtsIMutI	CAGTG	3 cut(s)	177, 553, 796
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	743
CciI	TCATGA	1 cut(s)	498
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	3 cut(s)	600, 697, 841
CviAII	CATG	4 cut(s)	303, 499, 622, 825
CviJI	RGCY	8 cut(s)	59, 133, 276, 322, 369, 528, 541, 745
CviKI_1	RGCY	8 cut(s)	59, 133, 276, 322, 369, 528, 541, 745
CviQI	GTAC	3 cut(s)	600, 697, 841
DdeI	CTNAG	1 cut(s)	693
DpnI	GATC	4 cut(s)	24, 385, 766, 771
DpnII	GATC	4 cut(s)	22, 383, 764, 769
Eam1104I	CTCTTC	2 cut(s)	101, 264
EarI	CTCTTC	2 cut(s)	101, 264
Eco130I	CCWWGG	1 cut(s)	73
Eco147I	AGGCCT	2 cut(s)	322, 541
Eco31I	GGTCTC	2 cut(s)	19, 157
Eco47I	GGWCC	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	185
EcoNI	CCTNNNNNAGG	1 cut(s)	752
EcoRII	CCWGG	3 cut(s)	93, 541, 808
EcoT14I	CCWWGG	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	4 cut(s)	306, 502, 625, 828
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	4 cut(s)	302, 498, 621, 824
FauNDI	CATATG	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	277, 367
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	277, 367
GluI	GCNGC	2 cut(s)	277, 367
GsaI	CCCAGC	1 cut(s)	532
GsuI	CTGGAG	1 cut(s)	831
HaeIII	GGCC	2 cut(s)	322, 541
Hin1II	CATG	4 cut(s)	306, 502, 625, 828
HinfI	GANTC	5 cut(s)	245, 326, 461, 569, 859
HphI	GGTGA	2 cut(s)	301, 854
Hpy188I	TCNGA	2 cut(s)	694, 769
Hpy188III	TCNNGA	5 cut(s)	20, 147, 499, 748, 818
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	2 cut(s)	215, 748
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	2 cut(s)	101, 641
HpyCH4V	TGCA	7 cut(s)	53, 195, 366, 422, 646, 710, 792
HpyF3I	CTNAG	1 cut(s)	693
HpySE526I	ACGT	2 cut(s)	101, 641
Hsp92II	CATG	4 cut(s)	306, 502, 625, 828
Kzo9I	GATC	4 cut(s)	22, 383, 764, 769
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	4 cut(s)	45, 259, 525, 750
Lsp1109I	GCAGC	2 cut(s)	263, 378
LweI	GCATC	2 cut(s)	39, 697
MaeII	ACGT	2 cut(s)	101, 641
MaeIII	GTNAC	4 cut(s)	298, 412, 664, 860
MalI	GATC	4 cut(s)	24, 385, 766, 771
MboI	GATC	4 cut(s)	22, 383, 764, 769
MboII	GAAGA	4 cut(s)	118, 281, 484, 487
MfeI	CAATTG	1 cut(s)	686
MflI	RGATCY	2 cut(s)	383, 764
MluCI	AATT	6 cut(s)	340, 428, 579, 686, 834, 868
MlyI	GAGTC	3 cut(s)	254, 578, 868
MmeI	TCCRAC	1 cut(s)	536
MnlI	CCTC	6 cut(s)	53, 143, 181, 267, 380, 531
MseI	TTAA	2 cut(s)	660, 854
MslI	CAYNNNNRTG	2 cut(s)	503, 520
MspR9I	CCNGG	3 cut(s)	95, 543, 810
MunI	CAATTG	1 cut(s)	686
Mva1269I	GAATGC	1 cut(s)	792
MvaI	CCWGG	3 cut(s)	95, 543, 810
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	4 cut(s)	22, 383, 764, 769
NlaIII	CATG	4 cut(s)	306, 502, 625, 828
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	2 cut(s)	412, 860
NspI	RCATGY	1 cut(s)	306
NspV	TTCGAA	1 cut(s)	608
PagI	TCATGA	1 cut(s)	498
PceI	AGGCCT	2 cut(s)	322, 541
PciI	ACATGT	1 cut(s)	302
PciSI	GCTCTTC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	792
PfeI	GAWTC	2 cut(s)	326, 461
PflMI	CCANNNNNTGG	1 cut(s)	380
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	278, 368
PleI	GAGTC	3 cut(s)	253, 577, 867
PpsI	GAGTC	3 cut(s)	253, 577, 867
PscI	ACATGT	1 cut(s)	302
Psp6I	CCWGG	3 cut(s)	93, 541, 808
PspFI	CCCAGC	1 cut(s)	528
PspGI	CCWGG	3 cut(s)	93, 541, 808
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	78
PstI	CTGCAG	1 cut(s)	368
PsuI	RGATCY	2 cut(s)	383, 764
RsaI	GTAC	3 cut(s)	601, 698, 842
RsaNI	GTAC	3 cut(s)	600, 697, 841
RseI	CAYNNNNRTG	2 cut(s)	503, 520
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	660, 854
SatI	GCNGC	2 cut(s)	277, 367
Sau3AI	GATC	4 cut(s)	22, 383, 764, 769
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	3 cut(s)	254, 578, 868
ScrFI	CCNGG	3 cut(s)	95, 543, 810
SfaNI	GCATC	2 cut(s)	39, 697
SfcI	CTRYAG	1 cut(s)	364
SfuI	TTCGAA	1 cut(s)	608
SinI	GGWCC	1 cut(s)	78
SmiMI	CAYNNNNRTG	2 cut(s)	503, 520
Sse9I	AATT	6 cut(s)	340, 428, 579, 686, 834, 868
SseBI	AGGCCT	2 cut(s)	322, 541
StuI	AGGCCT	2 cut(s)	322, 541
StyD4I	CCNGG	3 cut(s)	93, 541, 808
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	2 cut(s)	104, 644
TaqI	TCGA	1 cut(s)	608
TasI	AATT	6 cut(s)	340, 428, 579, 686, 834, 868
TatI	WGTACW	1 cut(s)	696
TfiI	GAWTC	2 cut(s)	326, 461
Tru1I	TTAA	2 cut(s)	660, 854
Tru9I	TTAA	2 cut(s)	660, 854
TscAI	CASTG	3 cut(s)	177, 553, 803
TseFI	GTSAC	2 cut(s)	412, 860
TseI	GCWGC	2 cut(s)	276, 366
Tsp45I	GTSAC	2 cut(s)	412, 860
TspDTI	ATGAA	4 cut(s)	216, 487, 567, 579
TspRI	CASTG	3 cut(s)	177, 553, 803
Van91I	CCANNNNNTGG	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	78
XagI	CCTNNNNNAGG	1 cut(s)	752
XapI	RAATTY	2 cut(s)	834, 868
XceI	RCATGY	1 cut(s)	306
XcmI	CCANNNNNNNNNTGG	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.