Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006156

Physical Location & Seq

Genomic Coordinates Forward (+)

33086116 .. 33087675

Gene Structure 1560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G026110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGATCATTGGTGTGGCTACCCCAACCGCATTGATGGCGACCAGATTTATGGTTAGCCCACGTAGTAGGGTTTGGCAAAATCCAAGTAACGACCCAGCATTTTGCACTCCTTTAAGCCCCTGCATCTTTGGGACAGCCATCTCAAGTTACGTGCAGCAAGTACTTTTTCAGGAGTTTGATCCATTGAAGCTACTACAAATTTTGAGGGGCAAAAGACTGATGTTTGTTGGAGATTCGGTACAGAGAGGCCAGTTTGAATCCATGTTCTGTATGGAGTTCGATGCCTCCATTGAGTACTACTGGGCTCCCTTTATTGTGGAGTCAATTTCGGATCATGCAACGAAGCATACTCTCGACTCCATAGCTAAGCATGGCAAGCACTGGGAAGGAGTAGATATTTTGGTGTTTGAGAGCTATGTATGGTGGATGCACAAGCCTACAAACAATGCTACATATGGATCTCCAAACGATGTCCAAGAATATAATGTCACTACTGTGTATAAATTGGCATTACAGACTTGGGCAGAATGGTTAGAATCAAGAATAAACCCAGAAAGGCAAAAGGTCTTCTTCATGAGTATGTCTCCAACACTTCTATGGAGCTGGGAATGGAGGCCTGGCAGTGATGAAAACTGCTACAATGAGTCCCATCCAATTCAAGGTTCATATTGGGGTACTGGTTCGAGCACCAAAATCATGGATATTATAGATGACACGTTACAGGAAAGATGCACACAATTTGTGAATATCACACAATTGTCTGAGTACAGAAAAGATGCACACACATCAGTTTATGGGGAACGCGAGGGCAGGCTCCTGACAAAGGAACAAAAATCTGCTCCAAAAAACTTCGCAGATTGCATTCACCGGTGCTTACCTGGAGTTCCAGATACATGGAACGAAATTTTGTACGCACATTTGTTAGAGTCATCAAAAATTTTTGCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

316

Amino Acids

36.46

Weight (kDa)

5.61

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	58 - 91	5.4e-11	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
PC-Esterase	PF13839	92 - 305	4.3e-52	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73140
fragaria_vesca	FvH4_3g18650 FvH4_3g18650
malus_domestica	MD03G1240300.v1.1
prunus_persica	Prupe.4G170300_v2.0.a1 Prupe.4G170300_v2.0.a1
pyrus_communis	pycom03g18550
rosa_chinensis	RchiOBHm_Chr5g0031471 RchiOBHm_Chr7g0217351
rosa_laevigata	RLG00000033269 RLG00000033270 RLG00000033310
rosa_multiflora	Rmu_sc0000404.1_g000003 Rmu_sc0011824.1_g000011 Rmu_sc0038917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048860 Rroxscaffold_3G00242310
rosa_rugosa	Rorug05G0126000 Rorug05G0126100 Rorug07G0168300
rosa_samantha	Rh5AG218900 Rh5BG218200 Rh5CG241900 Rh5DG223500 Rh7BG298600
rosa_wichuraiana	Rw5G019970 Rw7G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	804
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	3 cut(s)	173, 339, 466
AcsI	RAATTY	3 cut(s)	198, 903, 936
AfaI	GTAC	6 cut(s)	162, 240, 296, 676, 767, 911
AfiI	CCNNNNNNNGG	2 cut(s)	659, 823
AflIII	ACRYGT	1 cut(s)	714
AgeI	ACCGGT	1 cut(s)	867
AgsI	TTSAA	3 cut(s)	187, 257, 659
AjnI	CCWGG	2 cut(s)	616, 877
AjuI	GAANNNNNNNTTGG	2 cut(s)	646, 678
AleI	CACNNNNGTG	1 cut(s)	494
AluBI	AGCT	4 cut(s)	190, 365, 414, 603
AluI	AGCT	4 cut(s)	190, 365, 414, 603
Alw21I	GWGCWC	1 cut(s)	689
Alw26I	GTCTC	1 cut(s)	588
AlwI	GGATC	3 cut(s)	173, 339, 466
AoxI	GGCC	2 cut(s)	247, 614
ApeKI	GCWGC	1 cut(s)	154
ApoI	RAATTY	3 cut(s)	198, 903, 936
AsiGI	ACCGGT	1 cut(s)	867
AsuHPI	GGTGA	1 cut(s)	857
BanII	GRGCYC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	559
Bbv12I	GWGCWC	1 cut(s)	689
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	3 cut(s)	28, 146, 657
BciT130I	CCWGG	2 cut(s)	618, 879
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	588
BisI	GCNGC	1 cut(s)	155
BlpI	GCTNAGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	156
BmcAI	AGTACT	2 cut(s)	162, 296
Bme1390I	CCNGG	2 cut(s)	618, 879
BmiI	GGNNCC	2 cut(s)	306, 815
BmrFI	CCNGG	2 cut(s)	618, 879
BmrI	ACTGGG	2 cut(s)	310, 391
BmsI	GCATC	5 cut(s)	132, 271, 417, 719, 766
BmuI	ACTGGG	2 cut(s)	310, 391
BpiI	GAAGAC	1 cut(s)	559
BplI	GAGNNNNNCTC	2 cut(s)	568, 600
BpmI	CTGGAG	1 cut(s)	900
Bpu1102I	GCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	127
BsaAI	YACGTR	2 cut(s)	62, 151
BsaWI	WCCGGW	1 cut(s)	867
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	659, 823
Bse118I	RCCGGY	1 cut(s)	867
Bse1I	ACTGG	4 cut(s)	250, 305, 386, 682
BseBI	CCWGG	2 cut(s)	618, 879
BseGI	GGATG	2 cut(s)	432, 649
BseLI	CCNNNNNNNGG	2 cut(s)	659, 823
BseMII	CTCAG	1 cut(s)	753
BseNI	ACTGG	4 cut(s)	250, 305, 386, 682
BseXI	GCAGC	1 cut(s)	166
BseYI	CCCAGC	2 cut(s)	94, 603
BsgI	GTGCAG	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	804
BshFI	GGCC	2 cut(s)	249, 616
BshTI	ACCGGT	1 cut(s)	867
BsiHKAI	GWGCWC	1 cut(s)	689
BsiSI	CCGG	1 cut(s)	868
BslFI	GGGAC	2 cut(s)	145, 631
BslI	CCNNNNNNNGG	2 cut(s)	659, 823
BsmAI	GTCTC	1 cut(s)	588
BsmFI	GGGAC	2 cut(s)	145, 631
BsmI	GAATGC	1 cut(s)	861
BsnI	GGCC	2 cut(s)	249, 616
Bsp1286I	GDGCHC	2 cut(s)	307, 689
Bsp143I	GATC	4 cut(s)	3, 178, 331, 458
Bsp1720I	GCTNAGC	1 cut(s)	366
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	2 cut(s)	249, 616
BspCNI	CTCAG	1 cut(s)	754
BspFNI	CGCG	1 cut(s)	804
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	2 cut(s)	306, 815
BspPI	GGATC	3 cut(s)	173, 339, 466
BsrFI	RCCGGY	1 cut(s)	867
BsrI	ACTGG	4 cut(s)	250, 305, 386, 682
BssAI	RCCGGY	1 cut(s)	867
BssMI	GATC	4 cut(s)	3, 178, 331, 458
Bst2UI	CCWGG	2 cut(s)	618, 879
Bst4CI	ACNGT	1 cut(s)	496
BstBAI	YACGTR	2 cut(s)	62, 151
BstC8I	GCNNGC	2 cut(s)	377, 812
BstDEI	CTNAG	2 cut(s)	366, 762
BstENI	CCTNNNNNAGG	1 cut(s)	821
BstF5I	GGATG	2 cut(s)	432, 649
BstFNI	CGCG	1 cut(s)	804
BstKTI	GATC	4 cut(s)	6, 181, 334, 461
BstMAI	GTCTC	1 cut(s)	588
BstMBI	GATC	4 cut(s)	3, 178, 331, 458
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 376
BstNI	CCWGG	2 cut(s)	618, 879
BstSCI	CCNGG	2 cut(s)	616, 877
BstUI	CGCG	1 cut(s)	804
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	559
BstX2I	RGATCY	1 cut(s)	458
BstXI	CCANNNNNNTGG	3 cut(s)	49, 697, 894
BstYI	RGATCY	1 cut(s)	458
BsuRI	GGCC	2 cut(s)	249, 616
BtsCI	GGATG	2 cut(s)	432, 649
BtsI	GCAGTG	1 cut(s)	628
BtsIMutI	CAGTG	2 cut(s)	379, 628
Cac8I	GCNNGC	2 cut(s)	377, 812
CciI	TCATGA	1 cut(s)	573
Cfr10I	RCCGGY	1 cut(s)	867
Csp6I	GTAC	6 cut(s)	161, 239, 295, 675, 766, 910
CspAI	ACCGGT	1 cut(s)	867
CviAII	CATG	6 cut(s)	262, 335, 371, 574, 697, 894
CviQI	GTAC	6 cut(s)	161, 239, 295, 675, 766, 910
DdeI	CTNAG	2 cut(s)	366, 762
DpnI	GATC	4 cut(s)	5, 180, 333, 460
DpnII	GATC	4 cut(s)	3, 178, 331, 458
Eco147I	AGGCCT	1 cut(s)	616
Eco24I	GRGCYC	1 cut(s)	307
EcoNI	CCTNNNNNAGG	1 cut(s)	821
EcoRII	CCWGG	2 cut(s)	616, 877
EcoT38I	GRGCYC	1 cut(s)	307
FaeI	CATG	6 cut(s)	265, 338, 374, 577, 700, 897
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FaqI	GGGAC	2 cut(s)	145, 631
FatI	CATG	6 cut(s)	261, 334, 370, 573, 696, 893
FauNDI	CATATG	1 cut(s)	454
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	2 cut(s)	439, 636
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	155
GsaI	CCCAGC	2 cut(s)	98, 607
GsuI	CTGGAG	1 cut(s)	900
HaeIII	GGCC	2 cut(s)	249, 616
HapII	CCGG	1 cut(s)	868
Hin1II	CATG	6 cut(s)	265, 338, 374, 577, 700, 897
HinfI	GANTC	7 cut(s)	233, 257, 320, 356, 536, 644, 926
HpaII	CCGG	1 cut(s)	868
HphI	GGTGA	1 cut(s)	857
Hpy188I	TCNGA	2 cut(s)	331, 763
Hpy188III	TCNNGA	6 cut(s)	170, 353, 540, 574, 817, 887
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4IV	ACGT	3 cut(s)	61, 150, 716
HpyCH4V	TGCA	9 cut(s)	105, 123, 154, 338, 430, 732, 779, 861, 944
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 376
HpyF3I	CTNAG	2 cut(s)	366, 762
HpySE526I	ACGT	3 cut(s)	61, 150, 716
Hsp92II	CATG	6 cut(s)	265, 338, 374, 577, 700, 897
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 178, 331, 458
LmnI	GCTCC	4 cut(s)	310, 600, 819, 844
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	5 cut(s)	132, 271, 417, 719, 766
MaeII	ACGT	3 cut(s)	61, 150, 716
MaeIII	GTNAC	4 cut(s)	86, 146, 487, 717
MalI	GATC	4 cut(s)	5, 180, 333, 460
MboI	GATC	4 cut(s)	3, 178, 331, 458
MboII	GAAGA	2 cut(s)	559, 562
MfeI	CAATTG	1 cut(s)	755
MflI	RGATCY	1 cut(s)	458
MhlI	GDGCHC	2 cut(s)	307, 689
MluCI	AATT	8 cut(s)	198, 324, 503, 654, 737, 755, 903, 936
MlyI	GAGTC	4 cut(s)	329, 350, 653, 935
MmeI	TCCRAC	2 cut(s)	208, 611
MnlI	CCTC	5 cut(s)	198, 239, 295, 606, 799
MseI	TTAA	1 cut(s)	113
MslI	CAYNNNNRTG	4 cut(s)	11, 494, 578, 595
MspI	CCGG	1 cut(s)	868
MspR9I	CCNGG	2 cut(s)	618, 879
MunI	CAATTG	1 cut(s)	755
Mva1269I	GAATGC	1 cut(s)	861
MvaI	CCWGG	2 cut(s)	618, 879
MvnI	CGCG	1 cut(s)	804
MwoI	GCNNNNNNNGC	2 cut(s)	35, 376
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	4 cut(s)	3, 178, 331, 458
NlaIII	CATG	6 cut(s)	265, 338, 374, 577, 700, 897
NlaIV	GGNNCC	2 cut(s)	306, 815
NmuCI	GTSAC	1 cut(s)	487
OliI	CACNNNNGTG	1 cut(s)	494
PagI	TCATGA	1 cut(s)	573
PceI	AGGCCT	1 cut(s)	616
PctI	GAATGC	1 cut(s)	861
PfeI	GAWTC	3 cut(s)	233, 257, 536
PinAI	ACCGGT	1 cut(s)	867
PkrI	GCNGC	1 cut(s)	156
PleI	GAGTC	4 cut(s)	328, 350, 652, 934
PpsI	GAGTC	4 cut(s)	328, 350, 652, 934
Ppu21I	YACGTR	2 cut(s)	62, 151
Psp6I	CCWGG	2 cut(s)	616, 877
PspFI	CCCAGC	2 cut(s)	94, 603
PspGI	CCWGG	2 cut(s)	616, 877
PspN4I	GGNNCC	2 cut(s)	306, 815
PsuI	RGATCY	1 cut(s)	458
RsaI	GTAC	6 cut(s)	162, 240, 296, 676, 767, 911
RsaNI	GTAC	6 cut(s)	161, 239, 295, 675, 766, 910
RseI	CAYNNNNRTG	4 cut(s)	11, 494, 578, 595
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	4 cut(s)	3, 178, 331, 458
ScaI	AGTACT	2 cut(s)	162, 296
SchI	GAGTC	4 cut(s)	329, 350, 653, 935
ScrFI	CCNGG	2 cut(s)	618, 879
SduI	GDGCHC	2 cut(s)	307, 689
SfaNI	GCATC	5 cut(s)	132, 271, 417, 719, 766
SgrAI	CRCCGGYG	1 cut(s)	867
SmiMI	CAYNNNNRTG	4 cut(s)	11, 494, 578, 595
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	8 cut(s)	198, 324, 503, 654, 737, 755, 903, 936
SseBI	AGGCCT	1 cut(s)	616
SsiI	CCGC	1 cut(s)	27
StuI	AGGCCT	1 cut(s)	616
StyD4I	CCNGG	2 cut(s)	616, 877
TaaI	ACNGT	1 cut(s)	496
TaiI	ACGT	3 cut(s)	64, 153, 719
TaqI	TCGA	3 cut(s)	279, 354, 683
TasI	AATT	8 cut(s)	198, 324, 503, 654, 737, 755, 903, 936
TatI	WGTACW	3 cut(s)	160, 294, 765
TfiI	GAWTC	3 cut(s)	233, 257, 536
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	2 cut(s)	386, 628
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	3 cut(s)	562, 642, 654
TspRI	CASTG	2 cut(s)	386, 628
XagI	CCTNNNNNAGG	1 cut(s)	821
XapI	RAATTY	3 cut(s)	198, 903, 936
XcmI	CCANNNNNNNNNTGG	2 cut(s)	268, 594
ZrmI	AGTACT	2 cut(s)	162, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.