FvH4_3g18650

Protein trichome birefringence-like 31

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
11943552 .. 11945886
2335 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18650.t2

Sequence Viewer

Length: 1251 bp
ATGACAAAGCAGGTCTCTCTTGACCGTCGCCTCCAATCGCTCTTCCCTGTTGCATTGGCTTCTCTGCTTGTCCTCGGGACTACCCGACTATTCCTGGACACGTTGAAGAGCAACCATAGCTTTGTGTTTCAGCTATATGGCAGGCAAAGAGGTAAAGCAGAGAGACCAGCAGTGATTGTTTCCCCTGAGGATCGCATTGATGAAAGTTGCAATGTTTTTGAAGGAAATTGGGTATGGAATAACGAGTCAGGTCCTCCTCACTATACAGAAGAGAGCTGCCCCTACTTGGTGAAACAGGTTACATGCCAAAAGAATGGTAGGCCTGATTCTTATTACAAGAATTGGAGATGGCAACCCAATGACTGCAACCTCCCAAGGTTTGATGCATTGAAGCTACTGCAAATTCTGAGGGGCAAAAGACTGATGTTTGTTGGAGACTCGGTACAAAGAGGCCAGTTTGAATCCATGGTCTGCATGGTACAATCCATACTTCGTCAAGGAAAGAAATCCCTCCAAAGGGTTCCACCTAGGAAGATATTCAAAATCAAGGAGTTTGATGCCTCCATTGAGTACTACTGGGCTCCATTCATTGTGGAGTCAATTTCGGATCATGCAACGAAGCATACTGTACTAAAAAGGCTGGTGAAGCTTGACTCTATAGCCAAGCATGGCAAGCACTGGGAAGGAGTAGATATTTTGGTGTTTGAGAGCTATGTATGGTGGATGCACAAACCTACGATCAATGCTACATATGGAGCTCCAAATGATGTCCAAGAATATAATGTAACTACTGCTTATAAACTGGCATTACAAACTTGGGCAGAATGGTTAGAATCAAGCATAAACCCAGAAAGGCAAAAGGTGTTCTTCATGAGTATGTCTCCAACACATCTATGGAGCTGGGAATGGAGGCCTGGCAGTGATGAAAACTGCTATAATGAGTCCTATCCAATTCAAGGTTCATATTGGGGTACTGGTTCGAACACCAAAATAATGGATATTATAGACGACACTTTACAGGATTTGAAAGTTAAGGTCACATTTCTGAATATCACACAATTGTCTGAGTACAGAAAAGATGCACACACATCAGTTTATGGGGAACGCAAGGGCAAGCTCCTGACGAAGGAACAAAGATCTGATCCGAAAAACTTTGCCGATTGCATTCACTGGTGCTTACCTGGAGTTCCAGATACATGGAATGAAATTTTGTACGCACATTTGTTAAAGGGCCATCAAAATTTTTTGTAA

Protein Analysis

417

Amino Acids

48.5

Weight (kDa)

8.71

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 68 - 123 8.6e-21 PMR5 N terminal Domain
PC-Esterase PF13839 124 - 298 2.4e-50 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 798
AclWI GGATC 3 cut(s) 198, 615, 1136
AcsI RAATTY 3 cut(s) 402, 1206, 1240
AfaI GTAC 7 cut(s) 444, 480, 572, 630, 973, 1070, 1214
AfiI CCNNNNNNNGG 5 cut(s) 286, 516, 517, 956, 1126
AflIII ACRYGT 1 cut(s) 99
AgsI TTSAA 7 cut(s) 106, 221, 391, 461, 541, 956, 1027
AjnI CCWGG 3 cut(s) 93, 913, 1180
AjuI GAANNNNNNNTTGG 2 cut(s) 943, 975
AluBI AGCT 9 cut(s) 120, 133, 276, 394, 649, 711, 758, 900, 1117
AluI AGCT 9 cut(s) 120, 133, 276, 394, 649, 711, 758, 900, 1117
Alw21I GWGCWC 1 cut(s) 760
Alw26I GTCTC 4 cut(s) 19, 157, 429, 885
AlwI GGATC 3 cut(s) 198, 615, 1136
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 4 cut(s) 320, 451, 911, 1231
ApeKI GCWGC 1 cut(s) 276
ApoI RAATTY 3 cut(s) 402, 1206, 1240
Asp700I GAANNNNTTC 1 cut(s) 536
AspA2I CCTAGG 1 cut(s) 527
AspS9I GGNCC 2 cut(s) 251, 1231
AsuHPI GGTGA 2 cut(s) 301, 655
AsuII TTCGAA 1 cut(s) 980
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 251
AvrII CCTAGG 1 cut(s) 527
AxyI CCTNAGG 1 cut(s) 186
BanII GRGCYC 2 cut(s) 583, 760
Bbv12I GWGCWC 1 cut(s) 760
BbvI GCAGC 1 cut(s) 263
BccI CCATC 2 cut(s) 342, 1242
BciT130I CCWGG 3 cut(s) 95, 915, 1182
BcoDI GTCTC 4 cut(s) 19, 157, 429, 885
BfaI CTAG 1 cut(s) 528
BfmI CTRYAG 1 cut(s) 657
BglII AGATCT 1 cut(s) 1136
BisI GCNGC 1 cut(s) 277
BlnI CCTAGG 1 cut(s) 527
BlsI GCNGC 1 cut(s) 278
BmcAI AGTACT 1 cut(s) 572
Bme1390I CCNGG 3 cut(s) 95, 915, 1182
Bme18I GGWCC 1 cut(s) 251
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 2 cut(s) 251, 1231
BmiI GGNNCC 2 cut(s) 522, 582
BmrFI CCNGG 3 cut(s) 95, 915, 1182
BmrI ACTGGG 2 cut(s) 586, 688
BmsI GCATC 4 cut(s) 373, 547, 714, 1069
BmuI ACTGGG 2 cut(s) 586, 688
BplI GAGNNNNNCTC 2 cut(s) 865, 897
BpmI CTGGAG 1 cut(s) 1203
Bpu14I TTCGAA 1 cut(s) 980
BsaI GGTCTC 2 cut(s) 19, 157
BsaJI CCNNGG 4 cut(s) 73, 374, 465, 527
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 5 cut(s) 286, 516, 517, 956, 1126
Bse1I ACTGG 6 cut(s) 454, 581, 683, 807, 979, 1175
Bse21I CCTNAGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 217
BseBI CCWGG 3 cut(s) 95, 915, 1182
BseDI CCNNGG 4 cut(s) 73, 374, 465, 527
BseGI GGATG 1 cut(s) 729
BseLI CCNNNNNNNGG 5 cut(s) 286, 516, 517, 956, 1126
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 3 cut(s) 177, 398, 1056
BseNI ACTGG 6 cut(s) 454, 581, 683, 807, 979, 1175
BseRI GAGGAG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 263
BseYI CCCAGC 1 cut(s) 900
BshFI GGCC 4 cut(s) 322, 453, 913, 1233
BsiHKAI GWGCWC 1 cut(s) 760
BsiHKCI CYCGRG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 5 cut(s) 286, 516, 517, 956, 1126
BsmAI GTCTC 4 cut(s) 19, 157, 429, 885
BsmFI GGGAC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 1164
BsnI GGCC 4 cut(s) 322, 453, 913, 1233
Bso31I GGTCTC 2 cut(s) 19, 157
BsoBI CYCGRG 1 cut(s) 74
Bsp119I TTCGAA 1 cut(s) 980
Bsp1286I GDGCHC 2 cut(s) 583, 760
Bsp143I GATC 5 cut(s) 190, 607, 738, 1136, 1141
Bsp19I CCATGG 1 cut(s) 465
BspANI GGCC 4 cut(s) 322, 453, 913, 1233
BspCNI CTCAG 3 cut(s) 178, 399, 1057
BspHI TCATGA 1 cut(s) 870
BspLI GGNNCC 2 cut(s) 522, 582
BspPI GGATC 3 cut(s) 198, 615, 1136
BspQI GCTCTTC 2 cut(s) 47, 101
BspT104I TTCGAA 1 cut(s) 980
BspTNI GGTCTC 2 cut(s) 19, 157
BsrDI GCAATG 1 cut(s) 217
BsrI ACTGG 6 cut(s) 454, 581, 683, 807, 979, 1175
BssECI CCNNGG 4 cut(s) 73, 374, 465, 527
BssMI GATC 5 cut(s) 190, 607, 738, 1136, 1141
BssT1I CCWWGG 3 cut(s) 374, 465, 527
Bst2UI CCWGG 3 cut(s) 95, 915, 1182
Bst4CI ACNGT 2 cut(s) 26, 628
Bst6I CTCTTC 3 cut(s) 47, 101, 264
BstBI TTCGAA 1 cut(s) 980
BstC8I GCNNGC 3 cut(s) 143, 674, 1115
BstDEI CTNAG 3 cut(s) 186, 407, 1065
BstDSI CCRYGG 1 cut(s) 465
BstENI CCTNNNNNAGG 1 cut(s) 1124
BstF5I GGATG 1 cut(s) 729
BstKTI GATC 5 cut(s) 193, 610, 741, 1139, 1144
BstMAI GTCTC 4 cut(s) 19, 157, 429, 885
BstMBI GATC 5 cut(s) 190, 607, 738, 1136, 1141
BstMWI GCNNNNNNNGC 3 cut(s) 117, 646, 673
BstNI CCWGG 3 cut(s) 95, 915, 1182
BstNSI RCATGY 1 cut(s) 306
BstSCI CCNGG 3 cut(s) 93, 913, 1180
BstSFI CTRYAG 1 cut(s) 657
BstV1I GCAGC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 1136
BstXI CCANNNNNNTGG 3 cut(s) 314, 994, 1197
BstYI RGATCY 1 cut(s) 1136
Bsu36I CCTNAGG 1 cut(s) 186
BsuRI GGCC 4 cut(s) 322, 453, 913, 1233
BtgI CCRYGG 1 cut(s) 465
BtsCI GGATG 1 cut(s) 729
BtsI GCAGTG 2 cut(s) 177, 925
BtsIMutI CAGTG 4 cut(s) 177, 676, 925, 1168
Cac8I GCNNGC 3 cut(s) 143, 674, 1115
CciI TCATGA 1 cut(s) 870
Cfr13I GGNCC 2 cut(s) 251, 1231
Csp6I GTAC 7 cut(s) 443, 479, 571, 629, 972, 1069, 1213
CviAII CATG 7 cut(s) 303, 466, 475, 611, 668, 871, 1197
CviQI GTAC 7 cut(s) 443, 479, 571, 629, 972, 1069, 1213
DdeI CTNAG 3 cut(s) 186, 407, 1065
DpnI GATC 5 cut(s) 192, 609, 740, 1138, 1143
DpnII GATC 5 cut(s) 190, 607, 738, 1136, 1141
Eam1104I CTCTTC 3 cut(s) 47, 101, 264
EarI CTCTTC 3 cut(s) 47, 101, 264
Ecl136II GAGCTC 1 cut(s) 758
Eco130I CCWWGG 3 cut(s) 374, 465, 527
Eco147I AGGCCT 2 cut(s) 322, 913
Eco24I GRGCYC 2 cut(s) 583, 760
Eco31I GGTCTC 2 cut(s) 19, 157
Eco47I GGWCC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 758
Eco81I CCTNAGG 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 758
EcoNI CCTNNNNNAGG 1 cut(s) 1124
EcoO109I RGGNCCY 1 cut(s) 251
EcoRII CCWGG 3 cut(s) 93, 913, 1180
EcoT14I CCWWGG 3 cut(s) 374, 465, 527
EcoT22I ATGCAT 1 cut(s) 388
EcoT38I GRGCYC 2 cut(s) 583, 760
ErhI CCWWGG 3 cut(s) 374, 465, 527
FaeI CATG 7 cut(s) 306, 469, 478, 614, 671, 874, 1200
FalI AAGNNNNNCTT 2 cut(s) 851, 883
FaqI GGGAC 1 cut(s) 91
FatI CATG 7 cut(s) 302, 465, 474, 610, 667, 870, 1196
FauNDI CATATG 1 cut(s) 751
Fnu4HI GCNGC 1 cut(s) 277
FokI GGATG 1 cut(s) 736
FriOI GRGCYC 2 cut(s) 583, 760
Fsp4HI GCNGC 1 cut(s) 277
FspBI CTAG 1 cut(s) 528
GluI GCNGC 1 cut(s) 277
GsaI CCCAGC 1 cut(s) 904
GsuI CTGGAG 1 cut(s) 1203
HaeIII GGCC 4 cut(s) 322, 453, 913, 1233
Hin1II CATG 7 cut(s) 306, 469, 478, 614, 671, 874, 1200
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 8 cut(s) 245, 326, 437, 461, 596, 653, 833, 941
HphI GGTGA 2 cut(s) 301, 655
Hpy188I TCNGA 6 cut(s) 408, 607, 1047, 1066, 1141, 1146
Hpy188III TCNNGA 5 cut(s) 20, 76, 871, 1120, 1190
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 3 cut(s) 215, 677, 1120
HpyCH4III ACNGT 2 cut(s) 26, 628
HpyCH4IV ACGT 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 646, 673
HpyF3I CTNAG 3 cut(s) 186, 407, 1065
HpySE526I ACGT 1 cut(s) 101
Hsp92II CATG 7 cut(s) 306, 469, 478, 614, 671, 874, 1200
Kzo9I GATC 5 cut(s) 190, 607, 738, 1136, 1141
LguI GCTCTTC 2 cut(s) 47, 101
LmnI GCTCC 5 cut(s) 586, 755, 763, 897, 1122
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 4 cut(s) 373, 547, 714, 1069
MaeI CTAG 1 cut(s) 528
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 3 cut(s) 298, 784, 1036
MalI GATC 5 cut(s) 192, 609, 740, 1138, 1143
MboI GATC 5 cut(s) 190, 607, 738, 1136, 1141
MboII GAAGA 5 cut(s) 34, 118, 281, 544, 859
MfeI CAATTG 1 cut(s) 1058
MflI RGATCY 1 cut(s) 1136
MhlI GDGCHC 2 cut(s) 583, 760
MluCI AATT 8 cut(s) 226, 340, 402, 600, 951, 1058, 1206, 1240
MlyI GAGTC 5 cut(s) 254, 431, 605, 647, 950
MmeI TCCRAC 2 cut(s) 412, 908
Mph1103I ATGCAT 1 cut(s) 388
MroXI GAANNNNTTC 1 cut(s) 536
MseI TTAA 2 cut(s) 1032, 1226
MslI CAYNNNNRTG 2 cut(s) 875, 892
MspR9I CCNGG 3 cut(s) 95, 915, 1182
MunI CAATTG 1 cut(s) 1058
Mva1269I GAATGC 1 cut(s) 1164
MvaI CCWGG 3 cut(s) 95, 915, 1182
MwoI GCNNNNNNNGC 3 cut(s) 117, 646, 673
NcoI CCATGG 1 cut(s) 465
NdeI CATATG 1 cut(s) 751
NdeII GATC 5 cut(s) 190, 607, 738, 1136, 1141
NlaIII CATG 7 cut(s) 306, 469, 478, 614, 671, 874, 1200
NlaIV GGNNCC 2 cut(s) 522, 582
NmuCI GTSAC 1 cut(s) 1036
NsiI ATGCAT 1 cut(s) 388
NspI RCATGY 1 cut(s) 306
NspV TTCGAA 1 cut(s) 980
PagI TCATGA 1 cut(s) 870
PceI AGGCCT 2 cut(s) 322, 913
PciSI GCTCTTC 2 cut(s) 47, 101
PctI GAATGC 1 cut(s) 1164
PdmI GAANNNNTTC 1 cut(s) 536
PfeI GAWTC 3 cut(s) 326, 461, 833
PfoI TCCNGGA 1 cut(s) 93
PkrI GCNGC 1 cut(s) 278
PleI GAGTC 5 cut(s) 253, 431, 604, 647, 949
PpsI GAGTC 5 cut(s) 253, 431, 604, 647, 949
PpuMI RGGWCCY 1 cut(s) 251
PsiI TTATAA 1 cut(s) 798
Psp124BI GAGCTC 1 cut(s) 760
Psp5II RGGWCCY 1 cut(s) 251
Psp6I CCWGG 3 cut(s) 93, 913, 1180
PspFI CCCAGC 1 cut(s) 900
PspGI CCWGG 3 cut(s) 93, 913, 1180
PspN4I GGNNCC 2 cut(s) 522, 582
PspPI GGNCC 2 cut(s) 251, 1231
PspPPI RGGWCCY 1 cut(s) 251
PsuI RGATCY 1 cut(s) 1136
RsaI GTAC 7 cut(s) 444, 480, 572, 630, 973, 1070, 1214
RsaNI GTAC 7 cut(s) 443, 479, 571, 629, 972, 1069, 1213
RseI CAYNNNNRTG 2 cut(s) 875, 892
SacI GAGCTC 1 cut(s) 760
SapI GCTCTTC 2 cut(s) 47, 101
SaqAI TTAA 2 cut(s) 1032, 1226
SatI GCNGC 1 cut(s) 277
Sau3AI GATC 5 cut(s) 190, 607, 738, 1136, 1141
Sau96I GGNCC 2 cut(s) 251, 1231
ScaI AGTACT 1 cut(s) 572
SchI GAGTC 5 cut(s) 254, 431, 605, 647, 950
ScrFI CCNGG 3 cut(s) 95, 915, 1182
SduI GDGCHC 2 cut(s) 583, 760
SfaNI GCATC 4 cut(s) 373, 547, 714, 1069
SfcI CTRYAG 1 cut(s) 657
SfuI TTCGAA 1 cut(s) 980
SinI GGWCC 1 cut(s) 251
SmiMI CAYNNNNRTG 2 cut(s) 875, 892
Sse9I AATT 8 cut(s) 226, 340, 402, 600, 951, 1058, 1206, 1240
SseBI AGGCCT 2 cut(s) 322, 913
SspMI CTAG 1 cut(s) 528
SstI GAGCTC 1 cut(s) 760
StuI AGGCCT 2 cut(s) 322, 913
StyD4I CCNGG 3 cut(s) 93, 913, 1180
StyI CCWWGG 3 cut(s) 374, 465, 527
TaaI ACNGT 2 cut(s) 26, 628
TaiI ACGT 1 cut(s) 104
TaqI TCGA 1 cut(s) 980
TasI AATT 8 cut(s) 226, 340, 402, 600, 951, 1058, 1206, 1240
TatI WGTACW 3 cut(s) 570, 628, 1068
TfiI GAWTC 3 cut(s) 326, 461, 833
Tru1I TTAA 2 cut(s) 1032, 1226
Tru9I TTAA 2 cut(s) 1032, 1226
TscAI CASTG 4 cut(s) 177, 683, 925, 1175
TseFI GTSAC 1 cut(s) 1036
TseI GCWGC 1 cut(s) 276
Tsp45I GTSAC 1 cut(s) 1036
TspDTI ATGAA 6 cut(s) 216, 577, 859, 939, 951, 1218
TspRI CASTG 4 cut(s) 177, 683, 925, 1175
VpaK11BI GGWCC 1 cut(s) 251
XagI CCTNNNNNAGG 1 cut(s) 1124
XapI RAATTY 3 cut(s) 402, 1206, 1240
XceI RCATGY 1 cut(s) 306
XcmI CCANNNNNNNNNTGG 2 cut(s) 472, 891
XmaJI CCTAGG 1 cut(s) 527
XmnI GAANNNNTTC 1 cut(s) 536
XspI CTAG 1 cut(s) 528
ZrmI AGTACT 1 cut(s) 572
Zsp2I ATGCAT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.