Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006156

Physical Location & Seq

Genomic Coordinates Forward (+)

68976772 .. 68978719

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00048860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGACGAAGCAGGTATCTCTTGATCGTCGCATCCAATCGCTCCTCCCTGTTGCATTGGCTTGTCTGCTTGTCCTTGGGACTACCCGACTATTCCTGGACACGTTGAAGAGCAACCACAGTTTTGTGTTTCAGCTATATGGCAGGTCAAGAGGTCAAGGAGAGAGACCAGCAGTGATTGTTTCCCCCGAGGACAGCATTGATGAAAGTTGTAATGTTTTTGAAGGAAAATGGGTATGGGATAACGAGTCATATGCACCTCACTATACAGAAGAGAGCTGCCCCTACTTGGTGAAACAGGTTACATGCCAAAAGAATGGTAGGCCTGATTCTTACTACAAGAATTGGAGATGGCAACCCAATGACTGCAACCTCCCAAGGTTTGATCCATTGAAGCTACTACAGATTTTGAGGGGCAAAAGACTAATGTTTGTTGGAGACTCAGTACAGAGAGGCCAGTTTGAATCCATGGTCTGTATGGTACAATCTATACTTCCTCAAGGAAAGAAATCGCTCCAAAGGGTTCCACCTAGGAAGATATTCACAATCAAGGAGTTCGATGCCTCCATTGAGTACTACTGGGCTCCCTTTATTGTGGAGTCAATTTCAGATCATGCAACGAAGCATACTGTACTAAAACGGTTGGTGAAGCTCGATTCCATAGCTAAGCATGGCAAGCACTGGGAAGGAGTAGATATTTTGGTGTTTGAGAGCTATGTATGGTGGATGCACAAGCCTACAATCAATGCTACATATGGATCTCCAAACAATGTCCAAGAATATAATGTCACTACTGCTTATAAATTGGCATTACAGACTTGGGCAGAATGGTTAGAATCAAGAACAAACCCAGAAAGGCAAAAGGTCTTCTTCATGAGTATGTCTCCAACACATCTATGGAGCTGGGAATGGAGGCCTGGCAGTGATGAAAACTGCTACAATGAGTCCTATCCAATTCAAGGTTCATATTGGGGTACTGGTTCGAACACCAAAATCATGGATATTATAGATGACACGTTACAGGATTTGAAAGCTAAGGTTACATTTTTGAATATCACACAATTGTCTGAGTACAGAAAAGATGCACACACATCAGTTTACGGGGAACGCAAGGGCAAGCTCCTGACAAAGGAACAAAGATCTGATCCAAAAAACTTCGCAGATTGCATTCACTGGTGCTTACCTGGAGTTCCAGATACATGGAACGAAATTTTGTACGCACATTTGTTAAAGAGTCATCAAAATCTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

416

Amino Acids

48.43

Weight (kDa)

8.42

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	68 - 123	4.2e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	124 - 406	3.1e-88	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73140
fragaria_vesca	FvH4_3g18650 FvH4_3g18650
malus_domestica	MD03G1240300.v1.1
prunus_persica	Prupe.4G170300_v2.0.a1 Prupe.4G170300_v2.0.a1
pyrus_communis	pycom03g18550
rosa_chinensis	RchiOBHm_Chr5g0031471 RchiOBHm_Chr7g0217351
rosa_laevigata	RLG00000033269 RLG00000033270 RLG00000033310
rosa_multiflora	Rmu_sc0000404.1_g000003 Rmu_sc0011824.1_g000011 Rmu_sc0038917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048860 Rroxscaffold_3G00242310
rosa_rugosa	Rorug05G0126000 Rorug05G0126100 Rorug07G0168300
rosa_samantha	Rh5AG218900 Rh5BG218200 Rh5CG241900 Rh5DG223500 Rh7BG298600
rosa_wichuraiana	Rw5G019970 Rw7G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	798
Acc36I	ACCTGC	1 cut(s)	132
AclWI	GGATC	3 cut(s)	377, 763, 1136
AcsI	RAATTY	1 cut(s)	1206
AfaI	GTAC	7 cut(s)	444, 480, 572, 630, 973, 1070, 1214
AfiI	CCNNNNNNNGG	3 cut(s)	286, 956, 1126
AflIII	ACRYGT	2 cut(s)	99, 1011
AgsI	TTSAA	7 cut(s)	106, 221, 391, 461, 956, 1027, 1048
AjnI	CCWGG	3 cut(s)	93, 913, 1180
AjuI	GAANNNNNNNTTGG	2 cut(s)	943, 975
AluBI	AGCT	9 cut(s)	133, 276, 394, 649, 662, 711, 900, 1031, 1117
AluI	AGCT	9 cut(s)	133, 276, 394, 649, 662, 711, 900, 1031, 1117
Alw26I	GTCTC	3 cut(s)	157, 429, 885
AlwI	GGATC	3 cut(s)	377, 763, 1136
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	3 cut(s)	320, 451, 911
ApeKI	GCWGC	1 cut(s)	276
ApoI	RAATTY	1 cut(s)	1206
Asp700I	GAANNNNTTC	1 cut(s)	536
AspA2I	CCTAGG	1 cut(s)	527
AsuHPI	GGTGA	2 cut(s)	301, 655
AsuII	TTCGAA	1 cut(s)	980
AvaI	CYCGRG	1 cut(s)	185
AvrII	CCTAGG	1 cut(s)	527
BanII	GRGCYC	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	856
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	1 cut(s)	342
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	3 cut(s)	95, 915, 1182
BcoDI	GTCTC	3 cut(s)	157, 429, 885
BfaI	CTAG	1 cut(s)	528
BfmI	CTRYAG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	132
BglII	AGATCT	1 cut(s)	1136
BisI	GCNGC	1 cut(s)	277
BlnI	CCTAGG	1 cut(s)	527
BlpI	GCTNAGC	1 cut(s)	663
BlsI	GCNGC	1 cut(s)	278
BmcAI	AGTACT	1 cut(s)	572
Bme1390I	CCNGG	3 cut(s)	95, 915, 1182
BmeT110I	CYCGRG	1 cut(s)	185
BmiI	GGNNCC	2 cut(s)	522, 582
BmrFI	CCNGG	3 cut(s)	95, 915, 1182
BmrI	ACTGGG	2 cut(s)	586, 688
BmsI	GCATC	4 cut(s)	39, 547, 714, 1069
BmuI	ACTGGG	2 cut(s)	586, 688
BpiI	GAAGAC	1 cut(s)	856
BplI	GAGNNNNNCTC	2 cut(s)	865, 897
BpmI	CTGGAG	1 cut(s)	1203
Bpu10I	CCTNAGC	1 cut(s)	1032
Bpu1102I	GCTNAGC	1 cut(s)	663
Bpu14I	TTCGAA	1 cut(s)	980
BpuEI	CTTGAG	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	5 cut(s)	73, 186, 374, 465, 527
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 956, 1126
Bse1I	ACTGG	5 cut(s)	454, 581, 683, 979, 1175
BseBI	CCWGG	3 cut(s)	95, 915, 1182
BseDI	CCNNGG	5 cut(s)	73, 186, 374, 465, 527
BseGI	GGATG	2 cut(s)	30, 729
BseLI	CCNNNNNNNGG	3 cut(s)	286, 956, 1126
BseMII	CTCAG	2 cut(s)	453, 1056
BseNI	ACTGG	5 cut(s)	454, 581, 683, 979, 1175
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	263
BseYI	CCCAGC	1 cut(s)	900
BshFI	GGCC	3 cut(s)	322, 453, 913
BsiHKCI	CYCGRG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	3 cut(s)	286, 956, 1126
BsmAI	GTCTC	3 cut(s)	157, 429, 885
BsmFI	GGGAC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	1164
BsnI	GGCC	3 cut(s)	322, 453, 913
Bso31I	GGTCTC	1 cut(s)	157
BsoBI	CYCGRG	1 cut(s)	185
Bsp119I	TTCGAA	1 cut(s)	980
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	6 cut(s)	22, 382, 607, 755, 1136, 1141
Bsp1720I	GCTNAGC	1 cut(s)	663
Bsp19I	CCATGG	1 cut(s)	465
BspANI	GGCC	3 cut(s)	322, 453, 913
BspCNI	CTCAG	2 cut(s)	452, 1057
BspHI	TCATGA	1 cut(s)	870
BspLI	GGNNCC	2 cut(s)	522, 582
BspMI	ACCTGC	1 cut(s)	132
BspPI	GGATC	3 cut(s)	377, 763, 1136
BspQI	GCTCTTC	1 cut(s)	101
BspT104I	TTCGAA	1 cut(s)	980
BspTNI	GGTCTC	1 cut(s)	157
BsrI	ACTGG	5 cut(s)	454, 581, 683, 979, 1175
BssECI	CCNNGG	5 cut(s)	73, 186, 374, 465, 527
BssMI	GATC	6 cut(s)	22, 382, 607, 755, 1136, 1141
BssT1I	CCWWGG	4 cut(s)	73, 374, 465, 527
Bst2UI	CCWGG	3 cut(s)	95, 915, 1182
Bst4CI	ACNGT	3 cut(s)	119, 628, 639
Bst6I	CTCTTC	2 cut(s)	101, 264
BstBI	TTCGAA	1 cut(s)	980
BstC8I	GCNNGC	2 cut(s)	674, 1115
BstDEI	CTNAG	4 cut(s)	439, 663, 1032, 1065
BstDSI	CCRYGG	1 cut(s)	465
BstENI	CCTNNNNNAGG	1 cut(s)	1124
BstF5I	GGATG	2 cut(s)	30, 729
BstKTI	GATC	6 cut(s)	25, 385, 610, 758, 1139, 1144
BstMAI	GTCTC	3 cut(s)	157, 429, 885
BstMBI	GATC	6 cut(s)	22, 382, 607, 755, 1136, 1141
BstMWI	GCNNNNNNNGC	1 cut(s)	673
BstNI	CCWGG	3 cut(s)	95, 915, 1182
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	3 cut(s)	93, 913, 1180
BstSFI	CTRYAG	1 cut(s)	398
BstV1I	GCAGC	1 cut(s)	263
BstV2I	GAAGAC	1 cut(s)	856
BstX2I	RGATCY	2 cut(s)	755, 1136
BstXI	CCANNNNNNTGG	3 cut(s)	314, 994, 1197
BstYI	RGATCY	2 cut(s)	755, 1136
BsuRI	GGCC	3 cut(s)	322, 453, 913
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	30, 729
BtsI	GCAGTG	2 cut(s)	177, 925
BtsIMutI	CAGTG	4 cut(s)	177, 676, 925, 1168
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	674, 1115
CciI	TCATGA	1 cut(s)	870
Csp6I	GTAC	7 cut(s)	443, 479, 571, 629, 972, 1069, 1213
CviAII	CATG	7 cut(s)	303, 466, 611, 668, 871, 994, 1197
CviQI	GTAC	7 cut(s)	443, 479, 571, 629, 972, 1069, 1213
DdeI	CTNAG	4 cut(s)	439, 663, 1032, 1065
DpnI	GATC	6 cut(s)	24, 384, 609, 757, 1138, 1143
DpnII	GATC	6 cut(s)	22, 382, 607, 755, 1136, 1141
Eam1104I	CTCTTC	2 cut(s)	101, 264
EarI	CTCTTC	2 cut(s)	101, 264
Eco130I	CCWWGG	4 cut(s)	73, 374, 465, 527
Eco147I	AGGCCT	2 cut(s)	322, 913
Eco24I	GRGCYC	1 cut(s)	583
Eco31I	GGTCTC	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	185
EcoNI	CCTNNNNNAGG	1 cut(s)	1124
EcoRII	CCWGG	3 cut(s)	93, 913, 1180
EcoT14I	CCWWGG	4 cut(s)	73, 374, 465, 527
EcoT38I	GRGCYC	1 cut(s)	583
ErhI	CCWWGG	4 cut(s)	73, 374, 465, 527
FaeI	CATG	7 cut(s)	306, 469, 614, 671, 874, 997, 1200
FalI	AAGNNNNNCTT	2 cut(s)	851, 883
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	7 cut(s)	302, 465, 610, 667, 870, 993, 1196
FauNDI	CATATG	2 cut(s)	250, 751
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	2 cut(s)	17, 736
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	1 cut(s)	277
GsaI	CCCAGC	1 cut(s)	904
GsuI	CTGGAG	1 cut(s)	1203
HaeIII	GGCC	3 cut(s)	322, 453, 913
Hin1II	CATG	7 cut(s)	306, 469, 614, 671, 874, 997, 1200
HinfI	GANTC	9 cut(s)	245, 326, 437, 461, 596, 653, 833, 941, 1231
HphI	GGTGA	2 cut(s)	301, 655
Hpy166II	GTNNAC	1 cut(s)	1096
Hpy188I	TCNGA	3 cut(s)	607, 1066, 1141
Hpy188III	TCNNGA	6 cut(s)	20, 147, 837, 871, 1120, 1190
Hpy8I	GTNNAC	1 cut(s)	1096
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	2 cut(s)	215, 677
HpyCH4III	ACNGT	3 cut(s)	119, 628, 639
HpyCH4IV	ACGT	2 cut(s)	101, 1013
HpyCH4V	TGCA	7 cut(s)	53, 254, 366, 614, 727, 1082, 1164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	673
HpyF3I	CTNAG	4 cut(s)	439, 663, 1032, 1065
HpySE526I	ACGT	2 cut(s)	101, 1013
Hsp92II	CATG	7 cut(s)	306, 469, 614, 671, 874, 997, 1200
Kzo9I	GATC	6 cut(s)	22, 382, 607, 755, 1136, 1141
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	5 cut(s)	45, 516, 586, 897, 1122
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	4 cut(s)	39, 547, 714, 1069
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	2 cut(s)	101, 1013
MaeIII	GTNAC	4 cut(s)	298, 784, 1014, 1036
MalI	GATC	6 cut(s)	24, 384, 609, 757, 1138, 1143
MboI	GATC	6 cut(s)	22, 382, 607, 755, 1136, 1141
MboII	GAAGA	5 cut(s)	118, 281, 544, 856, 859
MfeI	CAATTG	1 cut(s)	1058
MflI	RGATCY	2 cut(s)	755, 1136
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	6 cut(s)	340, 600, 800, 951, 1058, 1206
MlyI	GAGTC	5 cut(s)	254, 431, 605, 950, 1240
MmeI	TCCRAC	2 cut(s)	412, 908
MroXI	GAANNNNTTC	1 cut(s)	536
MseI	TTAA	1 cut(s)	1226
MslI	CAYNNNNRTG	2 cut(s)	875, 892
MspR9I	CCNGG	3 cut(s)	95, 915, 1182
MunI	CAATTG	1 cut(s)	1058
Mva1269I	GAATGC	1 cut(s)	1164
MvaI	CCWGG	3 cut(s)	95, 915, 1182
MwoI	GCNNNNNNNGC	1 cut(s)	673
NcoI	CCATGG	1 cut(s)	465
NdeI	CATATG	2 cut(s)	250, 751
NdeII	GATC	6 cut(s)	22, 382, 607, 755, 1136, 1141
NlaIII	CATG	7 cut(s)	306, 469, 614, 671, 874, 997, 1200
NlaIV	GGNNCC	2 cut(s)	522, 582
NmuCI	GTSAC	1 cut(s)	784
NspI	RCATGY	1 cut(s)	306
NspV	TTCGAA	1 cut(s)	980
PagI	TCATGA	1 cut(s)	870
PceI	AGGCCT	2 cut(s)	322, 913
PciSI	GCTCTTC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	1164
PdmI	GAANNNNTTC	1 cut(s)	536
PfeI	GAWTC	4 cut(s)	326, 461, 653, 833
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	278
PleI	GAGTC	5 cut(s)	253, 431, 604, 949, 1239
PpsI	GAGTC	5 cut(s)	253, 431, 604, 949, 1239
PsiI	TTATAA	1 cut(s)	798
Psp6I	CCWGG	3 cut(s)	93, 913, 1180
PspFI	CCCAGC	1 cut(s)	900
PspGI	CCWGG	3 cut(s)	93, 913, 1180
PspN4I	GGNNCC	2 cut(s)	522, 582
PsuI	RGATCY	2 cut(s)	755, 1136
RsaI	GTAC	7 cut(s)	444, 480, 572, 630, 973, 1070, 1214
RsaNI	GTAC	7 cut(s)	443, 479, 571, 629, 972, 1069, 1213
RseI	CAYNNNNRTG	2 cut(s)	875, 892
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	1226
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	6 cut(s)	22, 382, 607, 755, 1136, 1141
ScaI	AGTACT	1 cut(s)	572
SchI	GAGTC	5 cut(s)	254, 431, 605, 950, 1240
ScrFI	CCNGG	3 cut(s)	95, 915, 1182
SduI	GDGCHC	1 cut(s)	583
SfaNI	GCATC	4 cut(s)	39, 547, 714, 1069
SfcI	CTRYAG	1 cut(s)	398
SfuI	TTCGAA	1 cut(s)	980
SmiMI	CAYNNNNRTG	2 cut(s)	875, 892
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
Sse9I	AATT	6 cut(s)	340, 600, 800, 951, 1058, 1206
SseBI	AGGCCT	2 cut(s)	322, 913
SspMI	CTAG	1 cut(s)	528
StuI	AGGCCT	2 cut(s)	322, 913
StyD4I	CCNGG	3 cut(s)	93, 913, 1180
StyI	CCWWGG	4 cut(s)	73, 374, 465, 527
TaaI	ACNGT	3 cut(s)	119, 628, 639
TaiI	ACGT	2 cut(s)	104, 1016
TaqI	TCGA	3 cut(s)	555, 651, 980
TasI	AATT	6 cut(s)	340, 600, 800, 951, 1058, 1206
TatI	WGTACW	4 cut(s)	442, 570, 628, 1068
TfiI	GAWTC	4 cut(s)	326, 461, 653, 833
Tru1I	TTAA	1 cut(s)	1226
Tru9I	TTAA	1 cut(s)	1226
TscAI	CASTG	4 cut(s)	177, 683, 925, 1175
TseFI	GTSAC	1 cut(s)	784
TseI	GCWGC	1 cut(s)	276
Tsp45I	GTSAC	1 cut(s)	784
TspDTI	ATGAA	4 cut(s)	216, 859, 939, 951
TspRI	CASTG	4 cut(s)	177, 683, 925, 1175
XagI	CCTNNNNNAGG	1 cut(s)	1124
XapI	RAATTY	1 cut(s)	1206
XceI	RCATGY	1 cut(s)	306
XcmI	CCANNNNNNNNNTGG	2 cut(s)	472, 891
XmaJI	CCTAGG	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	536
XspI	CTAG	1 cut(s)	528
ZrmI	AGTACT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.